Wall clock time and date at job start Mon Mar 30 2020 05:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47376 * 2 1 4 4 C 1.53004 * 109.47211 * 120.00040 * 2 1 3 5 5 C 1.53003 * 109.46910 * 62.98575 * 4 2 1 6 6 H 1.08996 * 109.50487 * 174.51656 * 5 4 2 7 7 C 1.53100 * 109.50791 * 54.38494 * 5 4 2 8 8 O 1.43015 * 109.25701 * 183.21714 * 7 5 4 9 9 C 1.43015 * 113.74154 * 58.66650 * 8 7 5 10 10 C 1.53096 * 109.25930 * 301.33561 * 9 8 7 11 11 N 1.47005 * 109.26307 * 56.84527 * 10 9 8 12 12 C 1.46898 * 111.00266 * 177.60893 * 11 10 9 13 13 C 1.52997 * 109.47283 * 287.07877 * 12 11 10 14 14 O 1.42904 * 109.47138 * 67.21127 * 13 12 11 15 15 C 1.42896 * 113.99883 * 180.02562 * 14 13 12 16 16 C 1.50707 * 109.47078 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99405 * 359.97438 * 16 15 14 18 18 C 1.37868 * 119.99991 * 179.97438 * 16 15 14 19 19 N 1.31521 * 119.99910 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 120.00255 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47371 * 89.99696 * 20 18 16 22 22 H 1.48507 * 109.47093 * 209.99962 * 20 18 16 23 23 H 1.48497 * 109.47062 * 329.99750 * 20 18 16 24 24 H 1.08999 * 109.46634 * 292.38978 * 1 2 3 25 25 H 1.09000 * 109.46774 * 52.38309 * 1 2 3 26 26 H 1.08991 * 109.47431 * 172.38846 * 1 2 3 27 27 H 1.09005 * 109.46730 * 239.99691 * 2 1 3 28 28 H 1.08998 * 109.47321 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.46834 * 300.00091 * 3 2 1 30 30 H 1.08991 * 109.47313 * 60.00014 * 3 2 1 31 31 H 1.08997 * 109.46680 * 302.98765 * 4 2 1 32 32 H 1.08993 * 109.46861 * 182.98186 * 4 2 1 33 33 H 1.08997 * 109.50302 * 303.14822 * 7 5 4 34 34 H 1.08993 * 109.50524 * 63.23677 * 7 5 4 35 35 H 1.09010 * 109.50404 * 61.26465 * 9 8 7 36 36 H 1.08996 * 109.50954 * 181.35010 * 9 8 7 37 37 H 1.09001 * 109.50180 * 296.90565 * 10 9 8 38 38 H 1.09004 * 109.50661 * 176.78178 * 10 9 8 39 39 H 1.09003 * 109.47123 * 167.07395 * 12 11 10 40 40 H 1.08997 * 109.47125 * 47.08027 * 12 11 10 41 41 H 1.09001 * 109.46968 * 307.21696 * 13 12 11 42 42 H 1.08997 * 109.47227 * 187.21720 * 13 12 11 43 43 H 1.09004 * 109.47287 * 300.00227 * 15 14 13 44 44 H 1.08997 * 109.47524 * 60.00383 * 15 14 13 45 45 H 0.96997 * 119.99842 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 1.5923 -2.1839 1.2122 6 1 2.0357 -2.7215 2.0503 7 6 2.0440 -2.8236 -0.1033 8 8 1.5586 -4.1674 -0.1654 9 6 0.1348 -4.2700 -0.0775 10 6 -0.3362 -3.6447 1.2382 11 7 0.1267 -2.2511 1.3060 12 6 -0.3531 -1.5959 2.5301 13 6 -1.8521 -1.3163 2.4050 14 8 -2.5675 -2.5533 2.3868 15 6 -3.9840 -2.4038 2.2714 16 6 -4.6335 -3.7637 2.2628 17 1 -4.0253 -4.6530 2.3374 18 6 -6.0040 -3.8723 2.1596 19 7 -6.5709 -5.0591 2.1515 20 14 -7.0559 -2.3340 2.0312 21 1 -7.2262 -1.9686 0.6019 22 1 -8.3865 -2.5922 2.6381 23 1 -6.3914 -1.2184 2.7515 24 1 -0.3632 0.3915 0.9502 25 1 -0.3633 0.6273 -0.8140 26 1 -0.3634 -1.0185 -0.1361 27 1 1.8933 -0.5139 -0.8900 28 1 3.1301 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9563 0.8899 31 1 1.6336 -0.2393 2.1384 32 1 3.1287 -0.6752 1.2763 33 1 1.6442 -2.2531 -0.9416 34 1 3.1329 -2.8267 -0.1515 35 1 -0.3206 -3.7415 -0.9151 36 1 -0.1571 -5.3197 -0.1075 37 1 0.0763 -4.2065 2.0763 38 1 -1.4250 -3.6692 1.2836 39 1 0.1811 -0.6565 2.6727 40 1 -0.1753 -2.2483 3.3850 41 1 -2.0442 -0.7719 1.4804 42 1 -2.1823 -0.7180 3.2542 43 1 -4.3587 -1.8279 3.1177 44 1 -4.2200 -1.8822 1.3440 45 1 -7.5351 -5.1355 2.0792 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338995069.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:33 Heat of formation + Delta-G solvation = -85.203487 kcal Electronic energy + Delta-G solvation = -22787.274843 eV Core-core repulsion = 19612.253506 eV Total energy + Delta-G solvation = -3175.021337 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.14844 -37.21854 -36.62467 -34.72125 -32.65565 -31.39102 -30.17190 -27.91925 -26.94398 -26.81847 -25.57169 -22.78855 -21.88479 -21.56471 -20.75958 -19.14522 -16.90866 -16.73107 -16.04521 -15.74727 -15.24658 -15.15060 -14.99690 -14.69692 -14.33174 -14.08207 -13.60787 -13.44171 -13.03099 -12.72992 -12.52638 -12.27104 -12.07738 -11.81715 -11.76600 -11.52756 -11.34573 -11.17902 -11.11022 -10.86769 -10.80074 -10.61033 -10.39980 -10.34620 -10.10232 -9.88781 -9.35532 -9.16919 -8.80741 -8.45385 -7.94983 -6.13988 -4.13213 3.23297 3.30587 3.31731 3.87911 4.03301 4.33618 4.53847 4.69520 4.84128 4.93574 5.03602 5.15859 5.17996 5.27355 5.29926 5.51142 5.53379 5.55088 5.57806 5.61167 5.67099 5.72851 5.79983 5.82589 5.91744 5.99002 5.99899 6.02804 6.11938 6.18351 6.24854 6.31034 6.46521 6.55155 6.68523 6.90628 6.98367 7.18822 7.20620 7.35930 7.58472 7.98561 8.63187 8.96270 9.45578 10.98922 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.022462 B = 0.004960 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.250438 B = 5643.263964 C = 6378.828872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.091 4.091 3 C -0.148 4.148 4 C -0.110 4.110 5 C 0.044 3.956 6 H 0.045 0.955 7 C 0.068 3.932 8 O -0.392 6.392 9 C 0.064 3.936 10 C 0.006 3.994 11 N -0.514 5.514 12 C 0.053 3.947 13 C 0.060 3.940 14 O -0.378 6.378 15 C 0.168 3.832 16 C -0.519 4.519 17 H 0.082 0.918 18 C 0.073 3.927 19 N -0.895 5.895 20 Si 0.875 3.125 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.267 1.267 24 H 0.047 0.953 25 H 0.033 0.967 26 H 0.103 0.897 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.057 0.943 36 H 0.097 0.903 37 H 0.035 0.965 38 H 0.131 0.869 39 H 0.086 0.914 40 H 0.041 0.959 41 H 0.052 0.948 42 H 0.040 0.960 43 H 0.001 0.999 44 H -0.001 1.001 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.400 10.559 -3.580 20.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.109 4.109 3 C -0.205 4.205 4 C -0.148 4.148 5 C -0.065 4.065 6 H 0.063 0.937 7 C -0.009 4.009 8 O -0.311 6.311 9 C -0.013 4.013 10 C -0.121 4.121 11 N -0.240 5.240 12 C -0.075 4.075 13 C -0.018 4.018 14 O -0.297 6.297 15 C 0.093 3.907 16 C -0.556 4.556 17 H 0.100 0.900 18 C -0.129 4.129 19 N -0.533 5.533 20 Si 0.702 3.298 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.192 1.192 24 H 0.067 0.933 25 H 0.052 0.948 26 H 0.121 0.879 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.107 0.893 35 H 0.075 0.925 36 H 0.115 0.885 37 H 0.054 0.946 38 H 0.149 0.851 39 H 0.104 0.896 40 H 0.059 0.941 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.019 0.981 44 H 0.017 0.983 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 17.225 10.361 -3.990 20.494 hybrid contribution -0.648 0.892 0.773 1.347 sum 16.578 11.254 -3.217 20.293 Atomic orbital electron populations 1.22348 0.93942 1.05033 1.00224 1.21087 0.97445 0.94855 0.97509 1.21882 1.00256 0.96855 1.01544 1.21753 0.99943 0.94027 0.99072 1.22313 0.89438 0.96419 0.98290 0.93664 1.22731 0.98688 0.83287 0.96164 1.87943 1.22436 1.26318 1.94362 1.22748 0.80029 1.01458 0.97073 1.23220 1.05192 0.87116 0.96562 1.62540 1.08266 1.16345 1.36808 1.22296 0.94958 0.99254 0.90968 1.22435 0.90960 0.88644 0.99721 1.87836 1.20495 1.27021 1.94380 1.20588 0.77435 0.98449 0.94211 1.20873 0.92009 0.91865 1.50895 0.90024 1.24756 0.97451 0.96023 0.94639 1.69875 1.10869 1.22473 1.50133 0.86864 0.80222 0.83852 0.78883 1.19915 1.20844 1.19161 0.93345 0.94811 0.87907 0.91435 0.93321 0.92952 0.93011 0.91269 0.91794 0.91936 0.89335 0.92450 0.88508 0.94636 0.85135 0.89556 0.94085 0.92988 0.94223 0.98139 0.98334 0.92368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 6.98 37.16 0.26 -1.59 16 2 C -0.09 -0.89 2.54 -90.62 -0.23 -1.12 16 3 C -0.15 -1.27 9.19 37.16 0.34 -0.93 16 4 C -0.11 -1.06 4.50 -26.73 -0.12 -1.18 16 5 C 0.04 0.52 2.25 -67.59 -0.15 0.37 16 6 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 7 C 0.07 0.80 5.89 37.21 0.22 1.02 16 8 O -0.39 -5.68 10.83 -35.23 -0.38 -6.06 16 9 C 0.06 0.93 7.01 37.21 0.26 1.19 16 10 C 0.01 0.10 5.29 -3.72 -0.02 0.08 16 11 N -0.51 -7.10 1.36 -226.34 -0.31 -7.41 16 12 C 0.05 0.74 4.22 -3.83 -0.02 0.72 16 13 C 0.06 1.01 5.94 37.16 0.22 1.23 16 14 O -0.38 -8.19 7.33 -35.23 -0.26 -8.45 16 15 C 0.17 4.13 4.76 36.01 0.17 4.30 16 16 C -0.52 -14.95 9.99 -34.44 -0.34 -15.30 16 17 H 0.08 2.56 8.06 -52.49 -0.42 2.14 16 18 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 19 N -0.90 -27.25 13.96 55.43 0.77 -26.47 16 20 Si 0.88 21.18 27.47 -169.99 -4.67 16.51 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 24 H 0.05 0.57 5.84 -51.93 -0.30 0.27 16 25 H 0.03 0.38 8.13 -51.93 -0.42 -0.04 16 26 H 0.10 1.41 5.59 -51.93 -0.29 1.12 16 27 H 0.07 0.66 6.10 -51.93 -0.32 0.34 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.67 5.78 -51.93 -0.30 0.37 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.72 6.10 -51.93 -0.32 0.40 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 36 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.13 2.52 5.28 -51.93 -0.27 2.25 16 39 H 0.09 1.01 4.69 -51.93 -0.24 0.76 16 40 H 0.04 0.62 8.04 -51.93 -0.42 0.20 16 41 H 0.05 0.85 6.65 -51.93 -0.35 0.51 16 42 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.00 0.02 7.20 -51.93 -0.37 -0.35 16 44 H 0.00 -0.02 7.57 -51.93 -0.39 -0.42 16 45 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 330.46 15.07 4.98 4.98 Total: -1.00 -29.99 330.46 -7.18 -37.18 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -7.81 Total: -1.08 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: 0.49 Total: -9.20 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: 0.47 Total: -33.88 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.64 Total: -14.51 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.51 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.99 -7.18 -37.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338995069.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.027 kcal (2) G-P(sol) polarization free energy of solvation -29.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds