Wall clock time and date at job start Mon Mar 30 2020 05:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47376 * 2 1 4 4 C 1.53004 * 109.47211 * 120.00040 * 2 1 3 5 5 C 1.53003 * 109.46910 * 62.98575 * 4 2 1 6 6 H 1.08996 * 109.50487 * 174.51656 * 5 4 2 7 7 C 1.53100 * 109.50791 * 54.38494 * 5 4 2 8 8 O 1.43015 * 109.25701 * 183.21714 * 7 5 4 9 9 C 1.43015 * 113.74154 * 58.66650 * 8 7 5 10 10 C 1.53096 * 109.25930 * 301.33561 * 9 8 7 11 11 N 1.47005 * 109.26307 * 56.84527 * 10 9 8 12 12 C 1.46898 * 111.00266 * 177.60893 * 11 10 9 13 13 C 1.52997 * 109.47283 * 287.07877 * 12 11 10 14 14 O 1.42904 * 109.47138 * 67.21127 * 13 12 11 15 15 C 1.42896 * 113.99883 * 180.02562 * 14 13 12 16 16 C 1.50707 * 109.47078 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99405 * 359.97438 * 16 15 14 18 18 C 1.37868 * 119.99991 * 179.97438 * 16 15 14 19 19 N 1.31521 * 119.99910 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 120.00255 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47371 * 89.99696 * 20 18 16 22 22 H 1.48507 * 109.47093 * 209.99962 * 20 18 16 23 23 H 1.48497 * 109.47062 * 329.99750 * 20 18 16 24 24 H 1.08999 * 109.46634 * 292.38978 * 1 2 3 25 25 H 1.09000 * 109.46774 * 52.38309 * 1 2 3 26 26 H 1.08991 * 109.47431 * 172.38846 * 1 2 3 27 27 H 1.09005 * 109.46730 * 239.99691 * 2 1 3 28 28 H 1.08998 * 109.47321 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.46834 * 300.00091 * 3 2 1 30 30 H 1.08991 * 109.47313 * 60.00014 * 3 2 1 31 31 H 1.08997 * 109.46680 * 302.98765 * 4 2 1 32 32 H 1.08993 * 109.46861 * 182.98186 * 4 2 1 33 33 H 1.08997 * 109.50302 * 303.14822 * 7 5 4 34 34 H 1.08993 * 109.50524 * 63.23677 * 7 5 4 35 35 H 1.09010 * 109.50404 * 61.26465 * 9 8 7 36 36 H 1.08996 * 109.50954 * 181.35010 * 9 8 7 37 37 H 1.09001 * 109.50180 * 296.90565 * 10 9 8 38 38 H 1.09004 * 109.50661 * 176.78178 * 10 9 8 39 39 H 1.09003 * 109.47123 * 167.07395 * 12 11 10 40 40 H 1.08997 * 109.47125 * 47.08027 * 12 11 10 41 41 H 1.09001 * 109.46968 * 307.21696 * 13 12 11 42 42 H 1.08997 * 109.47227 * 187.21720 * 13 12 11 43 43 H 1.09004 * 109.47287 * 300.00227 * 15 14 13 44 44 H 1.08997 * 109.47524 * 60.00383 * 15 14 13 45 45 H 0.96997 * 119.99842 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 1.5923 -2.1839 1.2122 6 1 2.0357 -2.7215 2.0503 7 6 2.0440 -2.8236 -0.1033 8 8 1.5586 -4.1674 -0.1654 9 6 0.1348 -4.2700 -0.0775 10 6 -0.3362 -3.6447 1.2382 11 7 0.1267 -2.2511 1.3060 12 6 -0.3531 -1.5959 2.5301 13 6 -1.8521 -1.3163 2.4050 14 8 -2.5675 -2.5533 2.3868 15 6 -3.9840 -2.4038 2.2714 16 6 -4.6335 -3.7637 2.2628 17 1 -4.0253 -4.6530 2.3374 18 6 -6.0040 -3.8723 2.1596 19 7 -6.5709 -5.0591 2.1515 20 14 -7.0559 -2.3340 2.0312 21 1 -7.2262 -1.9686 0.6019 22 1 -8.3865 -2.5922 2.6381 23 1 -6.3914 -1.2184 2.7515 24 1 -0.3632 0.3915 0.9502 25 1 -0.3633 0.6273 -0.8140 26 1 -0.3634 -1.0185 -0.1361 27 1 1.8933 -0.5139 -0.8900 28 1 3.1301 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9563 0.8899 31 1 1.6336 -0.2393 2.1384 32 1 3.1287 -0.6752 1.2763 33 1 1.6442 -2.2531 -0.9416 34 1 3.1329 -2.8267 -0.1515 35 1 -0.3206 -3.7415 -0.9151 36 1 -0.1571 -5.3197 -0.1075 37 1 0.0763 -4.2065 2.0763 38 1 -1.4250 -3.6692 1.2836 39 1 0.1811 -0.6565 2.6727 40 1 -0.1753 -2.2483 3.3850 41 1 -2.0442 -0.7719 1.4804 42 1 -2.1823 -0.7180 3.2542 43 1 -4.3587 -1.8279 3.1177 44 1 -4.2200 -1.8822 1.3440 45 1 -7.5351 -5.1355 2.0792 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338995069.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:32 Heat of formation + Delta-G solvation = -103.709705 kcal Electronic energy + Delta-G solvation = -22788.077333 eV Core-core repulsion = 19612.253506 eV Total energy + Delta-G solvation = -3175.823827 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.22054 -38.73081 -37.69752 -35.87256 -34.79018 -32.40413 -31.57189 -29.80666 -27.84332 -27.74265 -26.75489 -24.06872 -23.69115 -22.84708 -21.75096 -20.08853 -19.04156 -17.89374 -17.32643 -17.11122 -16.68600 -16.37435 -16.26744 -15.99616 -15.71826 -15.20692 -14.83060 -14.72236 -14.41639 -14.13475 -13.88103 -13.39694 -13.23577 -13.02743 -12.88116 -12.82645 -12.66238 -12.45751 -12.41311 -12.31839 -12.01465 -11.83295 -11.53423 -11.46792 -11.40824 -11.27467 -11.10955 -10.89402 -10.43928 -10.14671 -9.08352 -8.36146 -6.43201 1.33516 1.35711 1.46312 2.29519 2.76873 2.94956 2.97094 3.12008 3.72447 3.93807 4.00053 4.08646 4.21798 4.22747 4.27206 4.34909 4.45189 4.48195 4.56899 4.58756 4.62704 4.69924 4.74572 4.80274 4.89510 4.91228 4.96026 5.02294 5.05878 5.11294 5.15016 5.25815 5.26156 5.35992 5.46282 5.49042 5.65254 5.92483 5.94721 6.01180 6.11475 6.24002 6.60823 6.77009 7.21436 8.80755 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.022462 B = 0.004960 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.250438 B = 5643.263964 C = 6378.828872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.087 4.087 3 C -0.144 4.144 4 C -0.103 4.103 5 C 0.045 3.955 6 H 0.038 0.962 7 C 0.063 3.937 8 O -0.404 6.404 9 C 0.070 3.930 10 C 0.013 3.987 11 N -0.511 5.511 12 C 0.059 3.941 13 C 0.053 3.947 14 O -0.395 6.395 15 C 0.180 3.820 16 C -0.539 4.539 17 H 0.032 0.968 18 C 0.015 3.985 19 N -0.943 5.943 20 Si 0.951 3.049 21 H -0.261 1.261 22 H -0.276 1.276 23 H -0.247 1.247 24 H 0.045 0.955 25 H 0.032 0.968 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.114 0.886 35 H 0.058 0.942 36 H 0.096 0.904 37 H 0.020 0.980 38 H 0.095 0.905 39 H 0.118 0.882 40 H 0.028 0.972 41 H 0.058 0.942 42 H 0.053 0.947 43 H 0.008 0.992 44 H 0.008 0.992 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.620 13.632 -3.907 23.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.106 4.106 3 C -0.202 4.202 4 C -0.140 4.140 5 C -0.063 4.063 6 H 0.056 0.944 7 C -0.013 4.013 8 O -0.323 6.323 9 C -0.007 4.007 10 C -0.115 4.115 11 N -0.237 5.237 12 C -0.068 4.068 13 C -0.024 4.024 14 O -0.315 6.315 15 C 0.104 3.896 16 C -0.576 4.576 17 H 0.051 0.949 18 C -0.183 4.183 19 N -0.582 5.582 20 Si 0.773 3.227 21 H -0.185 1.185 22 H -0.201 1.201 23 H -0.170 1.170 24 H 0.064 0.936 25 H 0.051 0.949 26 H 0.099 0.901 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.085 0.915 34 H 0.132 0.868 35 H 0.077 0.923 36 H 0.114 0.886 37 H 0.038 0.962 38 H 0.113 0.887 39 H 0.136 0.864 40 H 0.046 0.954 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.025 0.975 44 H 0.026 0.974 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 18.481 13.446 -4.317 23.259 hybrid contribution -0.916 -0.129 0.870 1.269 sum 17.565 13.316 -3.447 22.310 Atomic orbital electron populations 1.22280 0.95556 1.03472 1.00033 1.21052 0.95932 0.95923 0.97650 1.21836 1.01087 0.95648 1.01596 1.21735 1.01345 0.91913 0.99046 1.22406 0.87641 0.98200 0.98086 0.94397 1.22976 1.00112 0.82004 0.96197 1.87925 1.21797 1.28243 1.94363 1.22622 0.80553 1.01366 0.96156 1.22978 1.02884 0.88707 0.96881 1.62586 1.09965 1.14538 1.36567 1.22301 0.93521 1.00447 0.90529 1.22739 0.92004 0.87007 1.00606 1.87857 1.19128 1.29986 1.94528 1.20269 0.79020 0.95651 0.94648 1.21137 0.92475 0.92564 1.51473 0.94939 1.25776 0.98844 1.00007 0.93694 1.70032 1.11617 1.25402 1.51167 0.85665 0.78010 0.79260 0.79752 1.18538 1.20066 1.17030 0.93557 0.94912 0.90108 0.91221 0.91980 0.93011 0.92916 0.90991 0.89490 0.91493 0.86793 0.92347 0.88574 0.96214 0.88688 0.86394 0.95372 0.92336 0.92856 0.97473 0.97413 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 6.98 71.98 0.50 -2.84 16 2 C -0.09 -1.45 2.54 -10.79 -0.03 -1.47 16 3 C -0.14 -1.99 9.19 71.98 0.66 -1.33 16 4 C -0.10 -1.64 4.50 30.60 0.14 -1.51 16 5 C 0.05 0.98 2.25 44.93 0.10 1.08 16 6 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 7 C 0.06 1.37 5.89 72.02 0.42 1.79 16 8 O -0.40 -11.46 10.83 -148.98 -1.61 -13.07 16 9 C 0.07 2.09 7.01 72.01 0.50 2.59 16 10 C 0.01 0.45 5.29 86.32 0.46 0.91 16 11 N -0.51 -13.84 1.36 -870.01 -1.18 -15.02 16 12 C 0.06 1.60 4.22 86.30 0.36 1.96 16 13 C 0.05 1.73 5.94 71.98 0.43 2.16 16 14 O -0.40 -17.46 7.33 -148.98 -1.09 -18.55 16 15 C 0.18 8.83 4.76 71.24 0.34 9.17 16 16 C -0.54 -32.22 9.99 25.60 0.26 -31.97 16 17 H 0.03 2.18 8.06 -2.91 -0.02 2.16 16 18 C 0.01 0.86 5.47 84.65 0.46 1.33 16 19 N -0.94 -59.05 13.96 21.45 0.30 -58.76 16 20 Si 0.95 43.25 27.47 68.60 1.88 45.14 16 21 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 22 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 23 H -0.25 -10.36 6.54 99.48 0.65 -9.70 16 24 H 0.05 0.99 5.84 -2.39 -0.01 0.97 16 25 H 0.03 0.69 8.13 -2.39 -0.02 0.67 16 26 H 0.08 2.13 5.59 -2.39 -0.01 2.11 16 27 H 0.07 1.15 6.10 -2.38 -0.01 1.14 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.69 16 29 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 1.13 5.78 -2.39 -0.01 1.12 16 32 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.07 1.40 6.10 -2.39 -0.01 1.39 16 34 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 36 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 37 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.10 3.91 5.28 -2.39 -0.01 3.90 16 39 H 0.12 2.44 4.69 -2.39 -0.01 2.43 16 40 H 0.03 0.84 8.04 -2.39 -0.02 0.82 16 41 H 0.06 1.84 6.65 -2.39 -0.02 1.82 16 42 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.01 0.36 7.20 -2.39 -0.02 0.34 16 44 H 0.01 0.38 7.57 -2.39 -0.02 0.36 16 45 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -67.13 330.46 3.80 -63.33 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: 0.89 Total: 15.06 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: 4.61 Total: -18.13 kcal Atomic # 7 Polarization: -72.89 SS G_CDS: -0.88 Total: -73.77 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -2.70 Total: -31.62 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.88 Total: 45.14 kcal Total: -67.13 3.80 -63.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338995069.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.384 kcal (2) G-P(sol) polarization free energy of solvation -67.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds