Wall clock time and date at job start Mon Mar 30 2020 06:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47059 * 2 1 4 4 H 1.09004 * 109.47105 * 305.00340 * 3 2 1 5 5 O 1.42900 * 109.47054 * 65.00077 * 3 2 1 6 6 C 1.53002 * 109.47271 * 185.00278 * 3 2 1 7 7 H 1.08997 * 109.45521 * 60.07900 * 6 3 2 8 8 C 1.53041 * 109.46184 * 300.10798 * 6 3 2 9 9 C 1.53114 * 109.27890 * 180.80481 * 8 6 3 10 10 C 1.53119 * 109.16168 * 57.64907 * 9 8 6 11 11 C 1.53028 * 109.27995 * 302.34854 * 10 9 8 12 12 N 1.46844 * 109.46283 * 180.02562 * 6 3 2 13 13 C 1.46898 * 111.00431 * 305.85494 * 12 6 3 14 14 C 1.52998 * 109.47505 * 159.07857 * 13 12 6 15 15 O 1.42905 * 109.46980 * 66.91829 * 14 13 12 16 16 C 1.42902 * 113.99839 * 180.02562 * 15 14 13 17 17 C 1.50698 * 109.46777 * 180.02562 * 16 15 14 18 18 H 1.07990 * 120.00372 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99667 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00119 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99950 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47117 * 89.99625 * 21 19 17 23 23 H 1.48502 * 109.47101 * 210.00048 * 21 19 17 24 24 H 1.48498 * 109.46991 * 329.99953 * 21 19 17 25 25 H 1.09002 * 109.47011 * 299.99654 * 1 2 3 26 26 H 1.08995 * 109.47438 * 59.99974 * 1 2 3 27 27 H 1.09003 * 109.46798 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47011 * 240.00346 * 2 1 3 29 29 H 1.08995 * 109.47438 * 120.00026 * 2 1 3 30 30 H 0.96695 * 113.99998 * 60.00870 * 5 3 2 31 31 H 1.08997 * 109.50003 * 60.85796 * 8 6 3 32 32 H 1.08998 * 109.49947 * 300.74442 * 8 6 3 33 33 H 1.09000 * 109.52307 * 177.55930 * 9 8 6 34 34 H 1.09000 * 109.52033 * 297.68821 * 9 8 6 35 35 H 1.09001 * 109.49994 * 62.29327 * 10 9 8 36 36 H 1.09000 * 109.49965 * 182.36174 * 10 9 8 37 37 H 1.09005 * 109.46255 * 179.19232 * 11 10 9 38 38 H 1.09002 * 109.46360 * 299.15599 * 11 10 9 39 39 H 1.09005 * 109.46912 * 279.07912 * 13 12 6 40 40 H 1.09005 * 109.46932 * 39.07834 * 13 12 6 41 41 H 1.08991 * 109.47235 * 186.92106 * 14 13 12 42 42 H 1.09004 * 109.47117 * 306.92065 * 14 13 12 43 43 H 1.09001 * 109.46865 * 300.00365 * 16 15 14 44 44 H 1.08993 * 109.47175 * 59.99950 * 16 15 14 45 45 H 0.97001 * 119.99967 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9815 -0.8418 5 8 1.6619 2.0813 1.2211 6 6 3.5648 1.4443 -0.1258 7 1 3.8528 0.9582 -1.0579 8 6 4.1748 0.6851 1.0548 9 6 5.7011 0.7068 0.9355 10 6 6.1811 2.1602 0.8901 11 6 5.5130 2.8765 -0.2856 12 7 4.0541 2.8289 -0.1252 13 6 3.3837 3.6247 -1.1620 14 6 3.5005 5.1112 -0.8193 15 8 4.8680 5.5155 -0.9126 16 6 5.0884 6.8945 -0.6097 17 6 6.5565 7.2089 -0.7395 18 1 7.2516 6.4334 -1.0252 19 6 7.0121 8.4870 -0.4946 20 7 6.1654 9.4319 -0.1481 21 14 8.8318 8.8770 -0.6562 22 1 9.1244 9.3062 -2.0474 23 1 9.1894 9.9690 0.2845 24 1 9.6280 7.6656 -0.3341 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 2.0142 1.6542 2.0138 31 1 3.8235 -0.3466 1.0444 32 1 3.8759 1.1626 1.9879 33 1 6.1410 0.2046 1.7970 34 1 6.0023 0.1942 0.0219 35 1 5.9138 2.6608 1.8208 36 1 7.2634 2.1821 0.7630 37 1 5.8417 3.9155 -0.3121 38 1 5.7919 2.3837 -1.2170 39 1 3.8553 3.4360 -2.1265 40 1 2.3313 3.3448 -1.2111 41 1 2.9009 5.6936 -1.5187 42 1 3.1404 5.2795 0.1957 43 1 4.5216 7.5142 -1.3046 44 1 4.7613 7.0994 0.4096 45 1 6.4858 10.3311 0.0238 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339001263.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:34 Heat of formation + Delta-G solvation = -111.240157 kcal Electronic energy + Delta-G solvation = -22293.245661 eV Core-core repulsion = 19117.095289 eV Total energy + Delta-G solvation = -3176.150372 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.85735 -37.09715 -36.26462 -33.63695 -32.94155 -32.54452 -30.69780 -28.87226 -26.81355 -26.15643 -23.84629 -22.69197 -22.20946 -21.12405 -20.69582 -19.46831 -16.68796 -16.38111 -15.89847 -15.65802 -15.59876 -15.05691 -14.60491 -14.47719 -14.17605 -13.98332 -13.60316 -13.36206 -12.92753 -12.77315 -12.49373 -12.28090 -12.00304 -11.82055 -11.60211 -11.23006 -11.20784 -11.11012 -11.04737 -10.82578 -10.75146 -10.68866 -10.50713 -10.38267 -10.06968 -9.73515 -9.57816 -9.02289 -8.72642 -8.08427 -7.90652 -6.06949 -4.08460 3.31946 3.36996 3.41977 3.96230 4.37777 4.45695 4.56060 4.72656 4.83321 4.97785 4.98040 5.05527 5.11678 5.26079 5.29453 5.39431 5.46684 5.51119 5.57828 5.70213 5.71895 5.74436 5.79128 5.83854 5.94626 5.99469 6.05062 6.08686 6.13910 6.17941 6.24171 6.28695 6.48238 6.60516 6.88944 7.20555 7.44675 7.49991 7.52657 7.73151 7.82828 8.21226 8.65018 9.05452 9.56194 11.04577 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.027673 B = 0.004157 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.575400 B = 6733.394414 C = 7421.897364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.156 4.156 3 C 0.109 3.891 4 H 0.099 0.901 5 O -0.544 6.544 6 C 0.050 3.950 7 H 0.040 0.960 8 C -0.114 4.114 9 C -0.119 4.119 10 C -0.116 4.116 11 C 0.046 3.954 12 N -0.515 5.515 13 C 0.056 3.944 14 C 0.070 3.930 15 O -0.394 6.394 16 C 0.195 3.805 17 C -0.512 4.512 18 H 0.065 0.935 19 C 0.056 3.944 20 N -0.898 5.898 21 Si 0.906 3.094 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.272 1.272 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.369 0.631 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.120 0.880 38 H 0.020 0.980 39 H 0.036 0.964 40 H 0.081 0.919 41 H 0.036 0.964 42 H 0.048 0.952 43 H 0.002 0.998 44 H 0.005 0.995 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.794 -20.111 1.319 21.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.195 4.195 3 C 0.049 3.951 4 H 0.117 0.883 5 O -0.349 6.349 6 C -0.059 4.059 7 H 0.058 0.942 8 C -0.151 4.151 9 C -0.157 4.157 10 C -0.154 4.154 11 C -0.081 4.081 12 N -0.240 5.240 13 C -0.071 4.071 14 C -0.008 4.008 15 O -0.314 6.314 16 C 0.121 3.879 17 C -0.551 4.551 18 H 0.083 0.917 19 C -0.145 4.145 20 N -0.537 5.537 21 Si 0.733 3.267 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.197 1.197 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.216 0.784 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.138 0.862 38 H 0.038 0.962 39 H 0.054 0.946 40 H 0.099 0.901 41 H 0.055 0.945 42 H 0.066 0.934 43 H 0.020 0.980 44 H 0.023 0.977 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.066 -19.427 1.357 21.079 hybrid contribution 1.217 -0.249 -0.524 1.348 sum -6.849 -19.676 0.833 20.851 Atomic orbital electron populations 1.21696 0.95159 1.01193 1.02481 1.22285 0.97006 0.97552 1.02629 1.22090 0.92278 0.92114 0.88584 0.88345 1.86601 1.76012 1.57216 1.15041 1.22319 0.95202 0.90585 0.97778 0.94218 1.21637 0.95984 0.98842 0.98655 1.21569 0.95295 0.97651 1.01157 1.21584 0.99376 0.94462 0.99981 1.22481 0.86177 1.04233 0.95194 1.61817 1.05602 1.08667 1.47865 1.22245 0.98582 0.93569 0.92734 1.22228 0.86167 0.92758 0.99623 1.87750 1.22768 1.30029 1.90844 1.20161 0.96878 0.76259 0.94586 1.21050 0.92268 0.95242 1.46510 0.91708 1.24945 0.98479 0.95872 0.95210 1.69968 1.34429 1.02311 1.47021 0.86372 0.84367 0.78052 0.77895 1.20562 1.21116 1.19660 0.91954 0.92846 0.93069 0.91408 0.91386 0.78352 0.91862 0.91061 0.92226 0.92697 0.91117 0.91820 0.86200 0.96190 0.94578 0.90116 0.94544 0.93373 0.97983 0.97670 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.81 37.16 0.36 -0.83 16 2 C -0.16 -1.29 5.11 -26.73 -0.14 -1.42 16 3 C 0.11 1.16 2.34 -26.73 -0.06 1.10 16 4 H 0.10 1.12 5.91 -51.93 -0.31 0.82 16 5 O -0.54 -6.56 12.70 -35.23 -0.45 -7.00 16 6 C 0.05 0.60 1.75 -67.72 -0.12 0.48 16 7 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 8 C -0.11 -1.16 4.71 -26.65 -0.13 -1.29 16 9 C -0.12 -1.33 6.00 -26.61 -0.16 -1.49 16 10 C -0.12 -1.63 6.09 -26.65 -0.16 -1.79 16 11 C 0.05 0.77 5.21 -3.84 -0.02 0.75 16 12 N -0.51 -7.91 4.28 -226.69 -0.97 -8.88 16 13 C 0.06 0.90 5.38 -3.83 -0.02 0.88 16 14 C 0.07 1.37 6.25 37.16 0.23 1.61 16 15 O -0.39 -9.45 7.48 -35.23 -0.26 -9.72 16 16 C 0.20 5.43 5.69 36.00 0.20 5.63 16 17 C -0.51 -15.11 9.43 -34.44 -0.32 -15.44 16 18 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 21 Si 0.91 21.98 29.54 -169.99 -5.02 16.96 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 25 H 0.06 0.54 7.82 -51.93 -0.41 0.14 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.50 6.73 -51.93 -0.35 0.15 16 30 H 0.37 3.50 7.32 45.56 0.33 3.83 16 31 H 0.06 0.53 6.59 -51.93 -0.34 0.19 16 32 H 0.07 0.74 6.74 -51.93 -0.35 0.39 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.12 2.48 5.27 -51.93 -0.27 2.20 16 38 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.04 0.59 7.99 -51.93 -0.41 0.17 16 40 H 0.08 1.13 5.23 -51.93 -0.27 0.85 16 41 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 44 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 45 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 343.40 15.07 5.17 5.17 Total: -1.00 -31.31 343.40 -8.64 -39.94 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -7.42 Total: 0.27 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -0.43 Total: -10.29 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: -0.23 Total: -35.34 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.71 Total: -16.72 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.31 -8.64 -39.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339001263.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.296 kcal (2) G-P(sol) polarization free energy of solvation -31.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds