Wall clock time and date at job start Mon Mar 30 2020 06:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47059 * 2 1 4 4 H 1.09004 * 109.47105 * 305.00340 * 3 2 1 5 5 O 1.42900 * 109.47054 * 65.00077 * 3 2 1 6 6 C 1.53002 * 109.47271 * 185.00278 * 3 2 1 7 7 H 1.08997 * 109.45521 * 60.07900 * 6 3 2 8 8 C 1.53041 * 109.46184 * 300.10798 * 6 3 2 9 9 C 1.53114 * 109.27890 * 180.80481 * 8 6 3 10 10 C 1.53119 * 109.16168 * 57.64907 * 9 8 6 11 11 C 1.53028 * 109.27995 * 302.34854 * 10 9 8 12 12 N 1.46844 * 109.46283 * 180.02562 * 6 3 2 13 13 C 1.46898 * 111.00431 * 305.85494 * 12 6 3 14 14 C 1.52998 * 109.47505 * 159.07857 * 13 12 6 15 15 O 1.42905 * 109.46980 * 66.91829 * 14 13 12 16 16 C 1.42902 * 113.99839 * 180.02562 * 15 14 13 17 17 C 1.50698 * 109.46777 * 180.02562 * 16 15 14 18 18 H 1.07990 * 120.00372 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99667 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00119 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99950 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47117 * 89.99625 * 21 19 17 23 23 H 1.48502 * 109.47101 * 210.00048 * 21 19 17 24 24 H 1.48498 * 109.46991 * 329.99953 * 21 19 17 25 25 H 1.09002 * 109.47011 * 299.99654 * 1 2 3 26 26 H 1.08995 * 109.47438 * 59.99974 * 1 2 3 27 27 H 1.09003 * 109.46798 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47011 * 240.00346 * 2 1 3 29 29 H 1.08995 * 109.47438 * 120.00026 * 2 1 3 30 30 H 0.96695 * 113.99998 * 60.00870 * 5 3 2 31 31 H 1.08997 * 109.50003 * 60.85796 * 8 6 3 32 32 H 1.08998 * 109.49947 * 300.74442 * 8 6 3 33 33 H 1.09000 * 109.52307 * 177.55930 * 9 8 6 34 34 H 1.09000 * 109.52033 * 297.68821 * 9 8 6 35 35 H 1.09001 * 109.49994 * 62.29327 * 10 9 8 36 36 H 1.09000 * 109.49965 * 182.36174 * 10 9 8 37 37 H 1.09005 * 109.46255 * 179.19232 * 11 10 9 38 38 H 1.09002 * 109.46360 * 299.15599 * 11 10 9 39 39 H 1.09005 * 109.46912 * 279.07912 * 13 12 6 40 40 H 1.09005 * 109.46932 * 39.07834 * 13 12 6 41 41 H 1.08991 * 109.47235 * 186.92106 * 14 13 12 42 42 H 1.09004 * 109.47117 * 306.92065 * 14 13 12 43 43 H 1.09001 * 109.46865 * 300.00365 * 16 15 14 44 44 H 1.08993 * 109.47175 * 59.99950 * 16 15 14 45 45 H 0.97001 * 119.99967 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9815 -0.8418 5 8 1.6619 2.0813 1.2211 6 6 3.5648 1.4443 -0.1258 7 1 3.8528 0.9582 -1.0579 8 6 4.1748 0.6851 1.0548 9 6 5.7011 0.7068 0.9355 10 6 6.1811 2.1602 0.8901 11 6 5.5130 2.8765 -0.2856 12 7 4.0541 2.8289 -0.1252 13 6 3.3837 3.6247 -1.1620 14 6 3.5005 5.1112 -0.8193 15 8 4.8680 5.5155 -0.9126 16 6 5.0884 6.8945 -0.6097 17 6 6.5565 7.2089 -0.7395 18 1 7.2516 6.4334 -1.0252 19 6 7.0121 8.4870 -0.4946 20 7 6.1654 9.4319 -0.1481 21 14 8.8318 8.8770 -0.6562 22 1 9.1244 9.3062 -2.0474 23 1 9.1894 9.9690 0.2845 24 1 9.6280 7.6656 -0.3341 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 2.0142 1.6542 2.0138 31 1 3.8235 -0.3466 1.0444 32 1 3.8759 1.1626 1.9879 33 1 6.1410 0.2046 1.7970 34 1 6.0023 0.1942 0.0219 35 1 5.9138 2.6608 1.8208 36 1 7.2634 2.1821 0.7630 37 1 5.8417 3.9155 -0.3121 38 1 5.7919 2.3837 -1.2170 39 1 3.8553 3.4360 -2.1265 40 1 2.3313 3.3448 -1.2111 41 1 2.9009 5.6936 -1.5187 42 1 3.1404 5.2795 0.1957 43 1 4.5216 7.5142 -1.3046 44 1 4.7613 7.0994 0.4096 45 1 6.4858 10.3311 0.0238 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339001263.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:34 Heat of formation + Delta-G solvation = -133.301899 kcal Electronic energy + Delta-G solvation = -22294.202330 eV Core-core repulsion = 19117.095289 eV Total energy + Delta-G solvation = -3177.107041 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.89917 -38.64791 -37.53792 -35.17315 -34.46402 -33.71049 -31.67348 -30.48131 -28.80499 -27.07040 -25.14223 -24.33297 -23.62164 -22.34169 -21.72269 -20.48526 -18.62676 -17.79413 -17.40358 -16.85317 -16.64034 -16.46277 -16.19200 -15.81251 -15.65605 -15.15140 -14.79107 -14.61456 -14.16609 -14.12687 -13.72696 -13.27069 -13.21894 -13.06496 -12.95995 -12.73631 -12.71498 -12.47778 -12.45429 -12.19506 -12.08971 -11.92247 -11.69268 -11.59469 -11.33690 -11.28215 -10.95490 -10.74859 -10.51771 -10.13545 -9.14228 -8.31612 -6.44044 1.38864 1.42054 1.53999 2.34251 2.85955 3.02049 3.20851 3.57785 3.75551 3.87798 3.98712 4.03440 4.15024 4.23215 4.29712 4.35715 4.38596 4.49361 4.54199 4.62512 4.64616 4.73588 4.78732 4.84541 4.88500 4.95813 4.99429 5.06267 5.10064 5.13186 5.14801 5.19533 5.23121 5.37847 5.44358 5.46968 5.53613 5.54844 5.97024 6.18717 6.34101 6.54686 6.83193 6.96123 7.27801 8.80964 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.027673 B = 0.004157 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.575400 B = 6733.394414 C = 7421.897364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.148 4.148 3 C 0.112 3.888 4 H 0.088 0.912 5 O -0.563 6.563 6 C 0.050 3.950 7 H 0.044 0.956 8 C -0.110 4.110 9 C -0.113 4.113 10 C -0.114 4.114 11 C 0.049 3.951 12 N -0.527 5.527 13 C 0.065 3.935 14 C 0.063 3.937 15 O -0.397 6.397 16 C 0.210 3.790 17 C -0.543 4.543 18 H 0.062 0.938 19 C 0.005 3.995 20 N -0.932 5.932 21 Si 0.983 3.017 22 H -0.268 1.268 23 H -0.275 1.275 24 H -0.263 1.263 25 H 0.052 0.948 26 H 0.048 0.952 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.380 0.620 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.020 0.980 39 H 0.033 0.967 40 H 0.106 0.894 41 H 0.043 0.957 42 H 0.037 0.963 43 H -0.018 1.018 44 H -0.020 1.020 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.284 -22.351 1.391 23.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C 0.052 3.948 4 H 0.106 0.894 5 O -0.370 6.370 6 C -0.058 4.058 7 H 0.062 0.938 8 C -0.147 4.147 9 C -0.151 4.151 10 C -0.152 4.152 11 C -0.078 4.078 12 N -0.252 5.252 13 C -0.062 4.062 14 C -0.014 4.014 15 O -0.317 6.317 16 C 0.135 3.865 17 C -0.581 4.581 18 H 0.080 0.920 19 C -0.193 4.193 20 N -0.571 5.571 21 Si 0.806 3.194 22 H -0.193 1.193 23 H -0.200 1.200 24 H -0.188 1.188 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.229 0.771 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.038 0.962 39 H 0.052 0.948 40 H 0.124 0.876 41 H 0.061 0.939 42 H 0.055 0.945 43 H -0.001 1.001 44 H -0.002 1.002 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.576 -21.695 1.432 23.025 hybrid contribution 0.964 0.437 -0.534 1.186 sum -6.612 -21.259 0.898 22.281 Atomic orbital electron populations 1.21690 0.95105 1.01899 1.01808 1.22213 0.96943 0.95626 1.03812 1.22080 0.91185 0.93683 0.87832 0.89391 1.86576 1.76315 1.58176 1.15943 1.22462 0.96158 0.88353 0.98841 0.93823 1.21665 0.95187 1.00235 0.97644 1.21540 0.96004 0.95178 1.02362 1.21549 0.99289 0.96444 0.97924 1.22290 0.87390 1.01676 0.96469 1.61772 1.04791 1.11155 1.47439 1.22163 1.00238 0.91077 0.92749 1.22509 0.84048 0.95610 0.99241 1.87791 1.25572 1.27661 1.90635 1.19772 0.96252 0.78016 0.92443 1.21353 0.92945 0.95973 1.47818 0.91976 1.25984 1.04057 0.95278 0.94015 1.70085 1.37016 1.02918 1.47095 0.85183 0.77514 0.78196 0.78517 1.19296 1.19967 1.18755 0.92890 0.93318 0.91664 0.90386 0.89931 0.77134 0.88787 0.91194 0.90304 0.92055 0.92613 0.91769 0.90874 0.96200 0.94842 0.87579 0.93911 0.94516 1.00059 1.00239 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.81 71.98 0.71 -1.32 16 2 C -0.15 -1.97 5.11 30.59 0.16 -1.81 16 3 C 0.11 2.15 2.34 30.59 0.07 2.22 16 4 H 0.09 1.87 5.91 -2.38 -0.01 1.85 16 5 O -0.56 -12.78 12.70 -148.98 -1.89 -14.67 16 6 C 0.05 1.10 1.75 44.94 0.08 1.17 16 7 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 8 C -0.11 -1.93 4.71 30.65 0.14 -1.79 16 9 C -0.11 -2.24 6.00 30.67 0.18 -2.06 16 10 C -0.11 -3.17 6.09 30.64 0.19 -2.99 16 11 C 0.05 1.67 5.21 86.32 0.45 2.12 16 12 N -0.53 -16.10 4.28 -871.12 -3.73 -19.82 16 13 C 0.07 2.11 5.38 86.30 0.46 2.57 16 14 C 0.06 2.58 6.25 71.98 0.45 3.03 16 15 O -0.40 -20.03 7.48 -148.98 -1.11 -21.15 16 16 C 0.21 12.30 5.69 71.24 0.41 12.71 16 17 C -0.54 -33.07 9.43 25.60 0.24 -32.83 16 18 H 0.06 3.72 7.81 -2.92 -0.02 3.70 16 19 C 0.00 0.29 5.46 84.66 0.46 0.75 16 20 N -0.93 -57.43 13.29 21.45 0.28 -57.15 16 21 Si 0.98 45.16 29.54 68.60 2.03 47.19 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 24 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 25 H 0.05 0.83 7.82 -2.39 -0.02 0.81 16 26 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.08 0.88 6.73 -2.39 -0.02 0.87 16 30 H 0.38 6.52 7.32 -74.06 -0.54 5.98 16 31 H 0.09 1.14 6.59 -2.39 -0.02 1.12 16 32 H 0.07 1.28 6.74 -2.39 -0.02 1.26 16 33 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.07 3.19 5.27 -2.38 -0.01 3.17 16 38 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.03 1.09 7.99 -2.38 -0.02 1.08 16 40 H 0.11 2.88 5.23 -2.38 -0.01 2.87 16 41 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 43 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 44 H -0.02 -1.25 8.14 -2.39 -0.02 -1.27 16 45 H 0.27 15.41 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -69.39 343.40 -0.01 -69.40 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.41 Total: 14.41 kcal Atomic # 6 Polarization: -22.22 SS G_CDS: 4.00 Total: -18.22 kcal Atomic # 7 Polarization: -73.53 SS G_CDS: -3.44 Total: -76.97 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -3.01 Total: -35.82 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -69.39 -0.01 -69.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339001263.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.898 kcal (2) G-P(sol) polarization free energy of solvation -69.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds