Wall clock time and date at job start Mon Mar 30 2020 05:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34776 * 120.00204 * 2 1 4 4 O 1.21592 * 119.99726 * 354.91182 * 3 2 1 5 5 N 1.34775 * 120.00163 * 174.91481 * 3 2 1 6 6 C 1.47076 * 120.88197 * 174.87485 * 5 3 2 7 7 C 1.53242 * 108.51856 * 128.79606 * 6 5 3 8 8 N 1.46892 * 109.34220 * 53.83293 * 7 6 5 9 9 C 1.46896 * 111.00394 * 172.74589 * 8 7 6 10 10 C 1.52997 * 109.47337 * 176.58505 * 9 8 7 11 11 O 1.42896 * 109.47041 * 62.70591 * 10 9 8 12 12 C 1.42899 * 113.99878 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.47297 * 179.97438 * 12 11 10 14 14 H 1.08008 * 119.99824 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00510 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99634 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00153 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47492 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47408 * 120.00133 * 17 15 13 20 20 H 1.48510 * 109.47020 * 239.99681 * 17 15 13 21 21 C 1.46898 * 111.27033 * 296.89586 * 8 7 6 22 22 C 1.47083 * 120.88116 * 354.85873 * 5 3 2 23 23 H 1.09003 * 109.46890 * 299.99497 * 1 2 3 24 24 H 1.08999 * 109.47561 * 59.99620 * 1 2 3 25 25 H 1.08997 * 109.46972 * 180.02562 * 1 2 3 26 26 H 0.97005 * 120.00013 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.63275 * 9.08868 * 6 5 3 28 28 H 1.09001 * 109.79402 * 248.59811 * 6 5 3 29 29 H 1.09010 * 109.49166 * 173.79370 * 7 6 5 30 30 H 1.08999 * 109.49052 * 293.87097 * 7 6 5 31 31 H 1.09003 * 109.47045 * 296.58538 * 9 8 7 32 32 H 1.09004 * 109.46856 * 56.58453 * 9 8 7 33 33 H 1.09000 * 109.47222 * 182.70415 * 10 9 8 34 34 H 1.09000 * 109.47480 * 302.70553 * 10 9 8 35 35 H 1.09002 * 109.47222 * 299.99892 * 12 11 10 36 36 H 1.08998 * 109.47274 * 59.99938 * 12 11 10 37 37 H 0.97006 * 119.99772 * 179.97438 * 16 15 13 38 38 H 1.09004 * 109.49066 * 303.14556 * 21 8 7 39 39 H 1.08996 * 109.52067 * 183.07969 * 21 8 7 40 40 H 1.09003 * 109.62658 * 350.91243 * 22 5 3 41 41 H 1.08998 * 109.62977 * 111.49369 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5345 2.2181 -0.0934 5 7 3.4827 1.1695 0.1035 6 6 4.2461 2.4217 -0.0066 7 6 5.1874 2.5254 1.1982 8 7 6.0027 1.3065 1.2849 9 6 7.0359 1.4368 2.3209 10 6 7.8075 0.1210 2.4401 11 8 8.4759 -0.1525 1.2071 12 6 9.2306 -1.3659 1.2119 13 6 9.8889 -1.5535 -0.1307 14 1 9.7456 -0.8191 -0.9097 15 6 10.6741 -2.6624 -0.3648 16 7 10.8490 -3.5562 0.5838 17 14 11.4905 -2.8943 -2.0288 18 1 11.1391 -1.7563 -2.9156 19 1 12.9642 -2.9494 -1.8538 20 1 11.0170 -4.1622 -2.6401 21 6 5.1667 0.1220 1.5213 22 6 4.2245 -0.0802 0.3298 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.9500 -0.8401 -0.0004 27 1 3.5609 3.2694 -0.0099 28 1 4.8292 2.4188 -0.9276 29 1 5.8390 3.3909 1.0773 30 1 4.6004 2.6360 2.1099 31 1 7.7235 2.2379 2.0496 32 1 6.5653 1.6699 3.2761 33 1 8.5420 0.2018 3.2414 34 1 7.1129 -0.6885 2.6642 35 1 9.9947 -1.3156 1.9877 36 1 8.5659 -2.2065 1.4107 37 1 11.4011 -4.3366 0.4190 38 1 4.5799 0.2661 2.4286 39 1 5.8027 -0.7558 1.6352 40 1 3.5248 -0.8868 0.5490 41 1 4.8056 -0.3272 -0.5587 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339041573.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:40 Heat of formation + Delta-G solvation = -53.741556 kcal Electronic energy + Delta-G solvation = -21367.435806 eV Core-core repulsion = 18090.238417 eV Total energy + Delta-G solvation = -3277.197389 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.45662 -38.46678 -36.57233 -34.81690 -34.51704 -32.68520 -31.23375 -29.81148 -27.59494 -26.69587 -25.37792 -23.88873 -22.33298 -21.96354 -20.79883 -19.68191 -18.40186 -16.48297 -16.38626 -15.92094 -15.77959 -15.55726 -15.01551 -14.68015 -14.49181 -14.38997 -14.25728 -13.85630 -13.67210 -13.13736 -12.79186 -12.49134 -12.34852 -12.03943 -11.87404 -11.53895 -11.36285 -11.25235 -11.04455 -10.79085 -10.73397 -10.37033 -10.19854 -9.97719 -9.35638 -9.08374 -8.82120 -8.68693 -8.17124 -8.09437 -6.11402 -4.12359 2.54981 3.08878 3.28881 3.35728 3.42622 3.76699 3.91837 4.35013 4.78113 4.82789 4.93328 4.98796 5.08138 5.17934 5.25454 5.28374 5.32780 5.40538 5.53419 5.55692 5.57795 5.72579 5.74913 5.82650 5.97571 6.02402 6.10876 6.23908 6.27804 6.34903 6.78973 7.07457 7.16153 7.16605 7.41443 7.79281 7.80954 8.15922 8.46971 8.59544 9.02644 9.52804 11.00242 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.022042 B = 0.003832 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.984075 B = 7304.935486 C = 7879.172742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.754 5.754 3 C 0.707 3.293 4 O -0.596 6.596 5 N -0.629 5.629 6 C 0.135 3.865 7 C 0.042 3.958 8 N -0.522 5.522 9 C 0.062 3.938 10 C 0.060 3.940 11 O -0.378 6.378 12 C 0.194 3.806 13 C -0.510 4.510 14 H 0.068 0.932 15 C 0.055 3.945 16 N -0.900 5.900 17 Si 0.906 3.094 18 H -0.270 1.270 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.039 3.961 22 C 0.116 3.884 23 H 0.055 0.945 24 H 0.058 0.942 25 H 0.074 0.926 26 H 0.398 0.602 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.033 0.967 31 H 0.084 0.916 32 H 0.037 0.963 33 H 0.041 0.959 34 H 0.038 0.962 35 H 0.002 0.998 36 H 0.002 0.998 37 H 0.263 0.737 38 H 0.031 0.969 39 H 0.100 0.900 40 H 0.077 0.923 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.545 6.448 2.729 17.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.411 5.411 3 C 0.408 3.592 4 O -0.475 6.475 5 N -0.366 5.366 6 C 0.011 3.989 7 C -0.087 4.087 8 N -0.247 5.247 9 C -0.065 4.065 10 C -0.018 4.018 11 O -0.298 6.298 12 C 0.119 3.881 13 C -0.548 4.548 14 H 0.086 0.914 15 C -0.146 4.146 16 N -0.540 5.540 17 Si 0.734 3.266 18 H -0.194 1.194 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.090 4.090 22 C -0.007 4.007 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.093 0.907 26 H 0.234 0.766 27 H 0.112 0.888 28 H 0.094 0.906 29 H 0.106 0.894 30 H 0.051 0.949 31 H 0.102 0.898 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.020 0.980 36 H 0.020 0.980 37 H 0.072 0.928 38 H 0.049 0.951 39 H 0.118 0.882 40 H 0.095 0.905 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -16.694 7.114 2.095 18.267 hybrid contribution 0.417 -0.921 0.353 1.071 sum -16.277 6.193 2.448 17.586 Atomic orbital electron populations 1.21371 0.78391 1.01859 1.02112 1.45099 1.07693 1.07448 1.80892 1.15848 0.81431 0.84157 0.77723 1.90891 1.67531 1.30630 1.58476 1.47373 1.04012 1.09362 1.75859 1.21582 0.93084 0.85873 0.98316 1.22498 0.95235 0.93700 0.97277 1.61813 1.13210 1.01968 1.47660 1.22151 0.93358 0.99007 0.91988 1.22352 0.94891 0.94977 0.89545 1.87975 1.66100 1.44544 1.31144 1.20190 0.89467 0.80758 0.97667 1.21099 1.28740 1.06930 0.98042 0.91425 1.24944 0.96457 0.95505 0.97652 1.69974 1.39578 1.11578 1.32845 0.86304 0.78918 0.78136 0.83282 1.19430 1.20905 1.20905 1.22545 0.94979 0.95771 0.95692 1.21787 0.94065 0.85188 0.99668 0.92633 0.92378 0.90740 0.76598 0.88822 0.90613 0.89430 0.94891 0.89770 0.94455 0.94117 0.94449 0.97997 0.97982 0.92781 0.95114 0.88193 0.90521 0.89686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.87 10.71 59.85 0.64 1.51 16 2 N -0.75 -7.63 5.57 -72.07 -0.40 -8.03 16 3 C 0.71 9.67 8.31 -86.92 -0.72 8.95 16 4 O -0.60 -10.20 15.80 5.28 0.08 -10.12 16 5 N -0.63 -8.00 3.01 -178.19 -0.54 -8.54 16 6 C 0.13 1.68 6.61 -3.60 -0.02 1.66 16 7 C 0.04 0.51 5.62 -3.70 -0.02 0.49 16 8 N -0.52 -7.47 4.65 -234.32 -1.09 -8.55 16 9 C 0.06 0.90 5.51 -3.83 -0.02 0.87 16 10 C 0.06 1.06 5.59 37.16 0.21 1.27 16 11 O -0.38 -8.80 10.24 -35.23 -0.36 -9.16 16 12 C 0.19 5.17 5.69 36.01 0.20 5.38 16 13 C -0.51 -14.78 9.43 -34.44 -0.32 -15.11 16 14 H 0.07 1.97 7.81 -52.48 -0.41 1.56 16 15 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 16 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 17 Si 0.91 21.63 29.54 -169.99 -5.02 16.61 16 18 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 C 0.04 0.51 5.24 -3.70 -0.02 0.49 16 22 C 0.12 1.35 6.49 -3.60 -0.02 1.33 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.40 3.13 6.48 -40.82 -0.26 2.86 16 27 H 0.09 1.19 7.04 -51.93 -0.37 0.83 16 28 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.09 0.95 8.11 -51.92 -0.42 0.53 16 30 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.04 0.63 6.00 -51.93 -0.31 0.31 16 35 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 36 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 37 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.10 1.45 5.71 -51.93 -0.30 1.15 16 40 H 0.08 0.67 5.84 -51.93 -0.30 0.37 16 41 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 331.08 15.07 4.99 4.99 Total: -1.00 -34.24 331.08 -8.38 -42.62 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -6.58 Total: -2.28 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -0.20 Total: 8.31 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: -1.29 Total: -50.97 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.28 Total: -19.28 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.24 -8.38 -42.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339041573.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.120 kcal (2) G-P(sol) polarization free energy of solvation -34.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds