Wall clock time and date at job start Mon Mar 30 2020 05:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34776 * 120.00204 * 2 1 4 4 O 1.21592 * 119.99726 * 354.91182 * 3 2 1 5 5 N 1.34775 * 120.00163 * 174.91481 * 3 2 1 6 6 C 1.47076 * 120.88197 * 174.87485 * 5 3 2 7 7 C 1.53242 * 108.51856 * 128.79606 * 6 5 3 8 8 N 1.46892 * 109.34220 * 53.83293 * 7 6 5 9 9 C 1.46896 * 111.00394 * 172.74589 * 8 7 6 10 10 C 1.52997 * 109.47337 * 176.58505 * 9 8 7 11 11 O 1.42896 * 109.47041 * 62.70591 * 10 9 8 12 12 C 1.42899 * 113.99878 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.47297 * 179.97438 * 12 11 10 14 14 H 1.08008 * 119.99824 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00510 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99634 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00153 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47492 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47408 * 120.00133 * 17 15 13 20 20 H 1.48510 * 109.47020 * 239.99681 * 17 15 13 21 21 C 1.46898 * 111.27033 * 296.89586 * 8 7 6 22 22 C 1.47083 * 120.88116 * 354.85873 * 5 3 2 23 23 H 1.09003 * 109.46890 * 299.99497 * 1 2 3 24 24 H 1.08999 * 109.47561 * 59.99620 * 1 2 3 25 25 H 1.08997 * 109.46972 * 180.02562 * 1 2 3 26 26 H 0.97005 * 120.00013 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.63275 * 9.08868 * 6 5 3 28 28 H 1.09001 * 109.79402 * 248.59811 * 6 5 3 29 29 H 1.09010 * 109.49166 * 173.79370 * 7 6 5 30 30 H 1.08999 * 109.49052 * 293.87097 * 7 6 5 31 31 H 1.09003 * 109.47045 * 296.58538 * 9 8 7 32 32 H 1.09004 * 109.46856 * 56.58453 * 9 8 7 33 33 H 1.09000 * 109.47222 * 182.70415 * 10 9 8 34 34 H 1.09000 * 109.47480 * 302.70553 * 10 9 8 35 35 H 1.09002 * 109.47222 * 299.99892 * 12 11 10 36 36 H 1.08998 * 109.47274 * 59.99938 * 12 11 10 37 37 H 0.97006 * 119.99772 * 179.97438 * 16 15 13 38 38 H 1.09004 * 109.49066 * 303.14556 * 21 8 7 39 39 H 1.08996 * 109.52067 * 183.07969 * 21 8 7 40 40 H 1.09003 * 109.62658 * 350.91243 * 22 5 3 41 41 H 1.08998 * 109.62977 * 111.49369 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5345 2.2181 -0.0934 5 7 3.4827 1.1695 0.1035 6 6 4.2461 2.4217 -0.0066 7 6 5.1874 2.5254 1.1982 8 7 6.0027 1.3065 1.2849 9 6 7.0359 1.4368 2.3209 10 6 7.8075 0.1210 2.4401 11 8 8.4759 -0.1525 1.2071 12 6 9.2306 -1.3659 1.2119 13 6 9.8889 -1.5535 -0.1307 14 1 9.7456 -0.8191 -0.9097 15 6 10.6741 -2.6624 -0.3648 16 7 10.8490 -3.5562 0.5838 17 14 11.4905 -2.8943 -2.0288 18 1 11.1391 -1.7563 -2.9156 19 1 12.9642 -2.9494 -1.8538 20 1 11.0170 -4.1622 -2.6401 21 6 5.1667 0.1220 1.5213 22 6 4.2245 -0.0802 0.3298 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.9500 -0.8401 -0.0004 27 1 3.5609 3.2694 -0.0099 28 1 4.8292 2.4188 -0.9276 29 1 5.8390 3.3909 1.0773 30 1 4.6004 2.6360 2.1099 31 1 7.7235 2.2379 2.0496 32 1 6.5653 1.6699 3.2761 33 1 8.5420 0.2018 3.2414 34 1 7.1129 -0.6885 2.6642 35 1 9.9947 -1.3156 1.9877 36 1 8.5659 -2.2065 1.4107 37 1 11.4011 -4.3366 0.4190 38 1 4.5799 0.2661 2.4286 39 1 5.8027 -0.7558 1.6352 40 1 3.5248 -0.8868 0.5490 41 1 4.8056 -0.3272 -0.5587 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339041573.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:39 Heat of formation + Delta-G solvation = -79.953709 kcal Electronic energy + Delta-G solvation = -21368.572450 eV Core-core repulsion = 18090.238417 eV Total energy + Delta-G solvation = -3278.334033 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.47600 -39.63342 -38.18511 -35.86542 -35.62598 -34.77682 -32.24772 -31.11966 -29.22220 -28.01658 -26.42106 -24.91010 -24.44051 -23.07719 -21.95118 -20.65610 -19.38302 -18.57249 -17.53134 -17.39058 -17.07335 -16.69653 -16.43011 -15.98850 -15.74307 -15.68602 -15.30526 -15.06083 -14.83254 -14.74201 -13.87422 -13.78973 -13.46231 -13.16963 -13.07846 -12.98460 -12.75030 -12.62061 -12.55293 -12.37003 -12.15947 -12.07560 -11.56658 -11.31533 -11.19033 -10.82093 -10.31156 -10.13491 -9.66399 -9.15428 -8.29008 -6.39921 1.42482 1.42931 1.58039 1.62494 2.04451 2.37440 2.85882 2.91298 3.05210 3.26528 3.84620 3.94600 3.99948 4.19792 4.20821 4.32713 4.38178 4.43484 4.49816 4.52972 4.65429 4.67782 4.74247 4.81930 4.84939 4.89968 4.94778 5.00937 5.06448 5.23818 5.37740 5.46917 5.59688 5.84926 6.01427 6.09598 6.13139 6.60588 6.87655 6.90307 7.32404 7.47654 8.83320 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.022042 B = 0.003832 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.984075 B = 7304.935486 C = 7879.172742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.743 5.743 3 C 0.700 3.300 4 O -0.635 6.635 5 N -0.629 5.629 6 C 0.134 3.866 7 C 0.050 3.950 8 N -0.544 5.544 9 C 0.071 3.929 10 C 0.052 3.948 11 O -0.392 6.392 12 C 0.210 3.790 13 C -0.541 4.541 14 H 0.059 0.941 15 C 0.008 3.992 16 N -0.931 5.931 17 Si 0.979 3.021 18 H -0.266 1.266 19 H -0.274 1.274 20 H -0.272 1.272 21 C 0.041 3.959 22 C 0.120 3.880 23 H 0.048 0.952 24 H 0.047 0.953 25 H 0.112 0.888 26 H 0.410 0.590 27 H 0.090 0.910 28 H 0.071 0.929 29 H 0.100 0.900 30 H 0.037 0.963 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.046 0.954 34 H 0.046 0.954 35 H -0.018 1.018 36 H -0.013 1.013 37 H 0.270 0.730 38 H 0.042 0.958 39 H 0.083 0.917 40 H 0.106 0.894 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.033 6.086 2.350 18.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.401 5.401 3 C 0.402 3.598 4 O -0.518 6.518 5 N -0.366 5.366 6 C 0.011 3.989 7 C -0.078 4.078 8 N -0.270 5.270 9 C -0.056 4.056 10 C -0.025 4.025 11 O -0.312 6.312 12 C 0.135 3.865 13 C -0.579 4.579 14 H 0.078 0.922 15 C -0.191 4.191 16 N -0.570 5.570 17 Si 0.802 3.198 18 H -0.190 1.190 19 H -0.199 1.199 20 H -0.197 1.197 21 C -0.087 4.087 22 C -0.003 4.003 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.130 0.870 26 H 0.248 0.752 27 H 0.108 0.892 28 H 0.089 0.911 29 H 0.118 0.882 30 H 0.055 0.945 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.064 0.936 35 H -0.001 1.001 36 H 0.004 0.996 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.101 0.899 40 H 0.124 0.876 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.192 6.729 1.735 18.543 hybrid contribution 0.514 -0.805 0.538 1.096 sum -16.678 5.924 2.273 17.845 Atomic orbital electron populations 1.21550 0.77089 1.04091 1.01305 1.45097 1.08543 1.06879 1.79566 1.16082 0.81572 0.84560 0.77634 1.90860 1.68294 1.32269 1.60330 1.47408 1.03928 1.09701 1.75529 1.21561 0.92999 0.85930 0.98410 1.22457 0.95053 0.93204 0.97111 1.61791 1.14006 1.03137 1.48044 1.22063 0.93254 0.96766 0.93550 1.22678 0.95140 0.97191 0.87526 1.87928 1.66146 1.42774 1.34303 1.19781 0.88834 0.81699 0.96232 1.21402 1.30116 1.07541 0.98858 0.92234 1.25889 0.96596 0.94782 1.01802 1.70070 1.39945 1.12049 1.34984 0.85193 0.77997 0.78421 0.78148 1.18979 1.19889 1.19677 1.22496 0.94805 0.94713 0.96735 1.21803 0.94319 0.85580 0.98589 0.93274 0.93383 0.86990 0.75179 0.89200 0.91059 0.88181 0.94474 0.89860 0.91570 0.93568 0.93552 1.00071 0.99557 0.92161 0.93998 0.89884 0.87569 0.91004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.50 10.71 127.77 1.37 2.87 16 2 N -0.74 -13.71 5.57 -500.20 -2.79 -16.50 16 3 C 0.70 18.49 8.31 179.06 1.49 19.98 16 4 O -0.64 -21.62 15.80 -4.01 -0.06 -21.68 16 5 N -0.63 -15.38 3.01 -835.92 -2.52 -17.89 16 6 C 0.13 3.27 6.61 86.35 0.57 3.84 16 7 C 0.05 1.14 5.62 86.39 0.49 1.63 16 8 N -0.54 -14.92 4.65 -895.26 -4.16 -19.08 16 9 C 0.07 1.93 5.51 86.30 0.48 2.41 16 10 C 0.05 1.79 5.59 71.98 0.40 2.20 16 11 O -0.39 -18.44 10.24 -148.98 -1.53 -19.96 16 12 C 0.21 11.48 5.69 71.24 0.41 11.88 16 13 C -0.54 -31.80 9.43 25.60 0.24 -31.56 16 14 H 0.06 3.51 7.81 -2.91 -0.02 3.48 16 15 C 0.01 0.43 5.46 84.65 0.46 0.89 16 16 N -0.93 -55.08 13.29 21.45 0.28 -54.79 16 17 Si 0.98 43.95 29.54 68.60 2.03 45.98 16 18 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 19 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 20 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 21 C 0.04 1.02 5.24 86.38 0.45 1.47 16 22 C 0.12 2.63 6.49 86.35 0.56 3.19 16 23 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.41 5.43 6.48 -92.70 -0.60 4.83 16 27 H 0.09 2.27 7.04 -2.39 -0.02 2.25 16 28 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.10 2.01 8.11 -2.38 -0.02 1.99 16 30 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.05 1.53 6.00 -2.39 -0.01 1.52 16 35 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 36 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 37 H 0.27 14.76 8.31 -92.70 -0.77 13.99 16 38 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.08 2.36 5.71 -2.39 -0.01 2.34 16 40 H 0.11 1.64 5.84 -2.39 -0.01 1.62 16 41 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -73.72 331.08 -1.41 -75.13 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: 0.42 Total: 9.99 kcal Atomic # 6 Polarization: 11.90 SS G_CDS: 6.91 Total: 18.81 kcal Atomic # 7 Polarization: -99.10 SS G_CDS: -9.18 Total: -108.27 kcal Atomic # 8 Polarization: -40.05 SS G_CDS: -1.59 Total: -41.64 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -73.72 -1.41 -75.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339041573.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.819 kcal (2) G-P(sol) polarization free energy of solvation -73.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds