Wall clock time and date at job start Mon Mar 30 2020 05:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46905 * 2 1 4 4 C 1.52996 * 109.57446 * 61.51054 * 3 2 1 5 5 O 1.42898 * 109.47214 * 54.90180 * 4 3 2 6 6 C 1.53119 * 109.52531 * 301.34704 * 3 2 1 7 7 C 1.53037 * 109.27964 * 297.75140 * 6 3 2 8 8 N 1.46841 * 109.52464 * 300.81668 * 7 6 3 9 9 C 1.46899 * 111.00181 * 185.83782 * 8 7 6 10 10 C 1.52996 * 109.46994 * 76.17864 * 9 8 7 11 11 O 1.42902 * 109.47543 * 65.16814 * 10 9 8 12 12 C 1.42897 * 114.00078 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46998 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99717 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00212 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99866 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00139 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46925 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47187 * 120.00181 * 17 15 13 20 20 H 1.48505 * 109.46959 * 239.99982 * 17 15 13 21 21 C 1.46856 * 111.19484 * 61.74300 * 8 7 6 22 22 C 1.53035 * 109.52358 * 298.25532 * 21 8 7 23 23 H 1.09007 * 109.46926 * 186.01050 * 1 2 3 24 24 H 1.09000 * 109.47402 * 306.01131 * 1 2 3 25 25 H 1.09003 * 109.47287 * 66.01233 * 1 2 3 26 26 H 1.09006 * 109.46947 * 240.00338 * 2 1 3 27 27 H 1.08993 * 109.47376 * 119.99896 * 2 1 3 28 28 H 1.08996 * 109.47372 * 174.90477 * 4 3 2 29 29 H 1.09005 * 109.47130 * 294.90442 * 4 3 2 30 30 H 0.96700 * 113.99942 * 180.02562 * 5 4 3 31 31 H 1.08993 * 109.50529 * 177.80948 * 6 3 2 32 32 H 1.09007 * 109.49972 * 57.69155 * 6 3 2 33 33 H 1.08997 * 109.46207 * 60.83667 * 7 6 3 34 34 H 1.09004 * 109.46316 * 180.79869 * 7 6 3 35 35 H 1.09001 * 109.47081 * 196.17520 * 9 8 7 36 36 H 1.08999 * 109.47340 * 316.17458 * 9 8 7 37 37 H 1.08998 * 109.47648 * 185.17053 * 10 9 8 38 38 H 1.09004 * 109.46907 * 305.16556 * 10 9 8 39 39 H 1.09002 * 109.47081 * 299.99642 * 12 11 10 40 40 H 1.08990 * 109.47945 * 59.99783 * 12 11 10 41 41 H 0.96996 * 120.00198 * 180.02562 * 16 15 13 42 42 H 1.09009 * 109.45775 * 178.24129 * 21 8 7 43 43 H 1.08992 * 109.46207 * 58.27695 * 21 8 7 44 44 H 1.08995 * 109.50427 * 299.24154 * 22 21 8 45 45 H 1.09000 * 109.49990 * 179.12042 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5625 2.1550 1.2670 5 8 1.9672 1.4070 2.4153 6 6 1.5027 2.1753 -1.2325 7 6 2.0332 1.4945 -2.4962 8 7 3.5013 1.5226 -2.4894 9 6 4.0437 1.0018 -3.7513 10 6 3.8897 2.0584 -4.8471 11 8 4.6985 3.1934 -4.5317 12 6 4.6263 4.2448 -5.4967 13 6 5.5138 5.3841 -5.0657 14 1 6.0763 5.3124 -4.1465 15 6 5.6076 6.5177 -5.8448 16 7 4.9223 6.6051 -6.9638 17 14 6.7082 7.9295 -5.3109 18 1 7.3655 7.5855 -4.0245 19 1 7.7436 8.1695 -6.3479 20 1 5.8897 9.1562 -5.1355 21 6 4.0411 0.7845 -1.3402 22 6 3.5706 1.4442 -0.0420 23 1 -0.3633 -1.0221 0.1076 24 1 -0.3634 0.6042 0.8313 25 1 -0.3634 0.4178 -0.9389 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 2.0003 3.1522 1.3100 29 1 0.4755 2.2359 1.2507 30 1 1.6974 1.8008 3.2563 31 1 1.8341 3.2134 -1.2119 32 1 0.4132 2.1404 -1.2303 33 1 1.6898 0.4603 -2.5231 34 1 1.6639 2.0224 -3.3755 35 1 5.0995 0.7637 -3.6222 36 1 3.5003 0.1010 -4.0362 37 1 4.2071 1.6402 -5.8024 38 1 2.8453 2.3635 -4.9133 39 1 4.9589 3.8722 -6.4656 40 1 3.5974 4.5953 -5.5760 41 1 4.9885 7.4025 -7.5121 42 1 5.1304 0.7969 -1.3799 43 1 3.6884 -0.2463 -1.3725 44 1 3.9346 2.4708 -0.0027 45 1 3.9586 0.8869 0.8107 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339060038.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:27 Heat of formation + Delta-G solvation = -109.139367 kcal Electronic energy + Delta-G solvation = -22027.734394 eV Core-core repulsion = 18851.675119 eV Total energy + Delta-G solvation = -3176.059275 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.08627 -37.32281 -36.26891 -34.63951 -32.64213 -31.33977 -30.52955 -29.07681 -27.03419 -25.86576 -23.99599 -23.07942 -22.25109 -21.87515 -20.68996 -18.01963 -17.45097 -16.33788 -16.22158 -15.56331 -15.40930 -15.08751 -14.89929 -14.27743 -14.24036 -13.90187 -13.86610 -13.25280 -13.03481 -12.82788 -12.50041 -12.26906 -12.11083 -11.79587 -11.70928 -11.55832 -11.12146 -11.05617 -10.98812 -10.74315 -10.71257 -10.51782 -10.31899 -10.18875 -10.10312 -9.90618 -9.85771 -8.99391 -8.72370 -8.05731 -7.90994 -6.04478 -4.04939 3.33159 3.39380 3.46701 4.05632 4.09855 4.41326 4.65042 4.71314 4.81666 4.95868 5.09124 5.21284 5.29915 5.32105 5.34608 5.36995 5.41058 5.47075 5.58934 5.63973 5.67308 5.71822 5.77635 5.84493 5.92649 5.96282 6.03400 6.09127 6.13423 6.18836 6.21304 6.29470 6.38361 6.39994 6.49927 7.19329 7.37828 7.39982 7.47379 7.52462 7.88117 8.25066 8.71488 9.10956 9.59816 11.07368 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.023734 B = 0.003871 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.468752 B = 7231.344889 C = 7764.819453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.054 4.054 4 C 0.085 3.915 5 O -0.569 6.569 6 C -0.108 4.108 7 C 0.058 3.942 8 N -0.522 5.522 9 C 0.061 3.939 10 C 0.070 3.930 11 O -0.380 6.380 12 C 0.194 3.806 13 C -0.508 4.508 14 H 0.067 0.933 15 C 0.054 3.946 16 N -0.901 5.901 17 Si 0.906 3.094 18 H -0.270 1.270 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.057 3.943 22 C -0.101 4.101 23 H 0.048 0.952 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.046 0.954 29 H 0.045 0.955 30 H 0.374 0.626 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.030 0.970 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.038 0.962 37 H 0.036 0.964 38 H 0.034 0.966 39 H 0.001 0.999 40 H 0.002 0.998 41 H 0.262 0.738 42 H 0.073 0.927 43 H 0.028 0.972 44 H 0.072 0.928 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.206 -13.338 14.853 21.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.055 4.055 4 C 0.007 3.993 5 O -0.374 6.374 6 C -0.146 4.146 7 C -0.070 4.070 8 N -0.247 5.247 9 C -0.067 4.067 10 C -0.008 4.008 11 O -0.299 6.299 12 C 0.120 3.880 13 C -0.546 4.546 14 H 0.085 0.915 15 C -0.146 4.146 16 N -0.541 5.541 17 Si 0.733 3.267 18 H -0.195 1.195 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.071 4.071 22 C -0.139 4.139 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.220 0.780 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.048 0.952 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.052 0.948 39 H 0.019 0.981 40 H 0.020 0.980 41 H 0.072 0.928 42 H 0.092 0.908 43 H 0.046 0.954 44 H 0.090 0.910 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.716 -13.105 14.445 21.363 hybrid contribution -0.218 0.405 0.105 0.471 sum -8.934 -12.701 14.550 21.280 Atomic orbital electron populations 1.21856 0.96309 1.01185 1.01635 1.21550 0.95490 0.95853 1.01971 1.20620 0.96244 0.95532 0.93061 1.22268 0.97618 0.93885 0.85537 1.86473 1.81746 1.53015 1.16188 1.21630 0.99538 1.00482 0.92914 1.22080 0.88089 0.98432 0.98381 1.61770 1.06082 1.55006 1.01859 1.22123 1.00311 0.94668 0.89554 1.22212 0.94868 0.88800 0.94970 1.87936 1.65968 1.26398 1.49604 1.20161 0.96248 0.84524 0.87114 1.21115 1.26072 0.99484 1.07957 0.91504 1.24945 0.96251 0.98548 0.94862 1.69977 1.41766 1.28858 1.13465 0.86309 0.80116 0.81519 0.78721 1.19467 1.20928 1.20921 1.22120 0.99783 0.94481 0.90692 1.21569 0.93763 1.02066 0.96481 0.93251 0.92733 0.92671 0.92105 0.91373 0.93535 0.93684 0.77966 0.90562 0.91460 0.95215 0.90564 0.90356 0.94352 0.94566 0.94766 0.98120 0.97977 0.92844 0.90809 0.95372 0.90969 0.91254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.17 37.16 0.34 -1.04 16 2 C -0.11 -1.15 4.23 -26.73 -0.11 -1.27 16 3 C -0.05 -0.60 0.38 -154.38 -0.06 -0.66 16 4 C 0.08 0.82 5.47 37.16 0.20 1.03 16 5 O -0.57 -5.36 12.35 -35.23 -0.44 -5.80 16 6 C -0.11 -1.30 4.56 -26.65 -0.12 -1.42 16 7 C 0.06 0.78 5.04 -3.84 -0.02 0.76 16 8 N -0.52 -8.11 4.53 -234.67 -1.06 -9.17 16 9 C 0.06 0.96 5.39 -3.83 -0.02 0.94 16 10 C 0.07 1.34 6.13 37.16 0.23 1.57 16 11 O -0.38 -9.52 10.28 -35.23 -0.36 -9.88 16 12 C 0.19 5.49 5.69 36.01 0.20 5.70 16 13 C -0.51 -15.37 9.43 -34.44 -0.32 -15.69 16 14 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 15 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.48 13.29 55.43 0.74 -26.74 16 17 Si 0.91 22.28 29.54 -169.99 -5.02 17.26 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 C 0.06 0.76 5.18 -3.83 -0.02 0.74 16 22 C -0.10 -1.27 4.75 -26.65 -0.13 -1.39 16 23 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 24 H 0.05 0.47 6.29 -51.93 -0.33 0.15 16 25 H 0.05 0.49 6.70 -51.93 -0.35 0.14 16 26 H 0.06 0.66 4.92 -51.93 -0.26 0.41 16 27 H 0.07 0.76 7.51 -51.93 -0.39 0.37 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.39 6.62 -51.93 -0.34 0.05 16 30 H 0.37 1.93 9.12 45.56 0.42 2.34 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.07 0.70 6.42 -51.92 -0.33 0.36 16 33 H 0.03 0.37 6.54 -51.93 -0.34 0.03 16 34 H 0.08 1.10 6.67 -51.93 -0.35 0.76 16 35 H 0.08 1.23 7.79 -51.93 -0.40 0.83 16 36 H 0.04 0.51 7.99 -51.93 -0.42 0.09 16 37 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.03 0.65 6.72 -51.93 -0.35 0.30 16 39 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 40 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 41 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.07 1.01 7.93 -51.92 -0.41 0.59 16 43 H 0.03 0.35 6.48 -51.93 -0.34 0.01 16 44 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.07 0.84 7.90 -51.93 -0.41 0.43 16 LS Contribution 340.93 15.07 5.14 5.14 Total: -1.00 -33.04 340.93 -8.03 -41.07 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -7.10 Total: -2.65 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: 0.08 Total: -9.22 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: -0.33 Total: -35.92 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.80 Total: -15.68 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.04 -8.03 -41.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339060038.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.069 kcal (2) G-P(sol) polarization free energy of solvation -33.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds