Wall clock time and date at job start Mon Mar 30 2020 05:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46905 * 2 1 4 4 C 1.52996 * 109.57446 * 61.51054 * 3 2 1 5 5 O 1.42898 * 109.47214 * 54.90180 * 4 3 2 6 6 C 1.53119 * 109.52531 * 301.34704 * 3 2 1 7 7 C 1.53037 * 109.27964 * 297.75140 * 6 3 2 8 8 N 1.46841 * 109.52464 * 300.81668 * 7 6 3 9 9 C 1.46899 * 111.00181 * 185.83782 * 8 7 6 10 10 C 1.52996 * 109.46994 * 76.17864 * 9 8 7 11 11 O 1.42902 * 109.47543 * 65.16814 * 10 9 8 12 12 C 1.42897 * 114.00078 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46998 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99717 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00212 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99866 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00139 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46925 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47187 * 120.00181 * 17 15 13 20 20 H 1.48505 * 109.46959 * 239.99982 * 17 15 13 21 21 C 1.46856 * 111.19484 * 61.74300 * 8 7 6 22 22 C 1.53035 * 109.52358 * 298.25532 * 21 8 7 23 23 H 1.09007 * 109.46926 * 186.01050 * 1 2 3 24 24 H 1.09000 * 109.47402 * 306.01131 * 1 2 3 25 25 H 1.09003 * 109.47287 * 66.01233 * 1 2 3 26 26 H 1.09006 * 109.46947 * 240.00338 * 2 1 3 27 27 H 1.08993 * 109.47376 * 119.99896 * 2 1 3 28 28 H 1.08996 * 109.47372 * 174.90477 * 4 3 2 29 29 H 1.09005 * 109.47130 * 294.90442 * 4 3 2 30 30 H 0.96700 * 113.99942 * 180.02562 * 5 4 3 31 31 H 1.08993 * 109.50529 * 177.80948 * 6 3 2 32 32 H 1.09007 * 109.49972 * 57.69155 * 6 3 2 33 33 H 1.08997 * 109.46207 * 60.83667 * 7 6 3 34 34 H 1.09004 * 109.46316 * 180.79869 * 7 6 3 35 35 H 1.09001 * 109.47081 * 196.17520 * 9 8 7 36 36 H 1.08999 * 109.47340 * 316.17458 * 9 8 7 37 37 H 1.08998 * 109.47648 * 185.17053 * 10 9 8 38 38 H 1.09004 * 109.46907 * 305.16556 * 10 9 8 39 39 H 1.09002 * 109.47081 * 299.99642 * 12 11 10 40 40 H 1.08990 * 109.47945 * 59.99783 * 12 11 10 41 41 H 0.96996 * 120.00198 * 180.02562 * 16 15 13 42 42 H 1.09009 * 109.45775 * 178.24129 * 21 8 7 43 43 H 1.08992 * 109.46207 * 58.27695 * 21 8 7 44 44 H 1.08995 * 109.50427 * 299.24154 * 22 21 8 45 45 H 1.09000 * 109.49990 * 179.12042 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5625 2.1550 1.2670 5 8 1.9672 1.4070 2.4153 6 6 1.5027 2.1753 -1.2325 7 6 2.0332 1.4945 -2.4962 8 7 3.5013 1.5226 -2.4894 9 6 4.0437 1.0018 -3.7513 10 6 3.8897 2.0584 -4.8471 11 8 4.6985 3.1934 -4.5317 12 6 4.6263 4.2448 -5.4967 13 6 5.5138 5.3841 -5.0657 14 1 6.0763 5.3124 -4.1465 15 6 5.6076 6.5177 -5.8448 16 7 4.9223 6.6051 -6.9638 17 14 6.7082 7.9295 -5.3109 18 1 7.3655 7.5855 -4.0245 19 1 7.7436 8.1695 -6.3479 20 1 5.8897 9.1562 -5.1355 21 6 4.0411 0.7845 -1.3402 22 6 3.5706 1.4442 -0.0420 23 1 -0.3633 -1.0221 0.1076 24 1 -0.3634 0.6042 0.8313 25 1 -0.3634 0.4178 -0.9389 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 2.0003 3.1522 1.3100 29 1 0.4755 2.2359 1.2507 30 1 1.6974 1.8008 3.2563 31 1 1.8341 3.2134 -1.2119 32 1 0.4132 2.1404 -1.2303 33 1 1.6898 0.4603 -2.5231 34 1 1.6639 2.0224 -3.3755 35 1 5.0995 0.7637 -3.6222 36 1 3.5003 0.1010 -4.0362 37 1 4.2071 1.6402 -5.8024 38 1 2.8453 2.3635 -4.9133 39 1 4.9589 3.8722 -6.4656 40 1 3.5974 4.5953 -5.5760 41 1 4.9885 7.4025 -7.5121 42 1 5.1304 0.7969 -1.3799 43 1 3.6884 -0.2463 -1.3725 44 1 3.9346 2.4708 -0.0027 45 1 3.9586 0.8869 0.8107 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339060038.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:26 Heat of formation + Delta-G solvation = -133.591185 kcal Electronic energy + Delta-G solvation = -22028.794704 eV Core-core repulsion = 18851.675119 eV Total energy + Delta-G solvation = -3177.119585 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.06594 -38.74586 -37.59107 -35.70382 -34.83006 -32.40313 -31.54399 -30.42083 -28.93184 -27.08283 -24.86739 -24.45713 -24.11609 -23.03891 -21.91275 -18.95679 -18.61094 -18.18270 -17.43504 -17.33312 -16.48995 -16.40062 -16.02563 -15.90044 -15.68541 -15.24544 -14.92297 -14.60024 -14.22456 -13.90418 -13.71873 -13.57233 -13.27054 -13.04033 -12.98692 -12.81884 -12.68725 -12.60242 -12.44207 -12.18763 -12.08713 -11.95019 -11.69996 -11.27575 -11.19389 -11.06317 -11.03155 -10.84126 -10.70204 -10.15659 -9.05054 -8.31028 -6.42822 1.39705 1.41392 1.56411 2.35972 2.95115 3.02496 3.27074 3.33744 3.74104 3.80418 4.00765 4.16541 4.23530 4.24308 4.30345 4.39038 4.45475 4.55293 4.57183 4.60031 4.66142 4.67413 4.72388 4.74027 4.82534 4.87456 4.92265 4.93826 5.01408 5.12131 5.13092 5.20444 5.22418 5.31776 5.40598 5.43581 5.56916 5.61180 5.99046 6.21265 6.29619 6.59090 6.88886 6.96384 7.29666 8.81715 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.023734 B = 0.003871 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.468752 B = 7231.344889 C = 7764.819453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.104 4.104 3 C -0.053 4.053 4 C 0.088 3.912 5 O -0.582 6.582 6 C -0.104 4.104 7 C 0.058 3.942 8 N -0.551 5.551 9 C 0.070 3.930 10 C 0.061 3.939 11 O -0.396 6.396 12 C 0.210 3.790 13 C -0.544 4.544 14 H 0.059 0.941 15 C 0.006 3.994 16 N -0.932 5.932 17 Si 0.983 3.017 18 H -0.266 1.266 19 H -0.270 1.270 20 H -0.271 1.271 21 C 0.060 3.940 22 C -0.097 4.097 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.039 0.961 29 H 0.061 0.939 30 H 0.393 0.607 31 H 0.052 0.948 32 H 0.087 0.913 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.045 0.955 38 H 0.035 0.965 39 H -0.017 1.017 40 H -0.019 1.019 41 H 0.270 0.730 42 H 0.065 0.935 43 H 0.045 0.955 44 H 0.049 0.951 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.582 -13.701 16.002 23.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.142 4.142 3 C -0.053 4.053 4 C 0.010 3.990 5 O -0.389 6.389 6 C -0.142 4.142 7 C -0.069 4.069 8 N -0.276 5.276 9 C -0.058 4.058 10 C -0.017 4.017 11 O -0.315 6.315 12 C 0.135 3.865 13 C -0.582 4.582 14 H 0.077 0.923 15 C -0.192 4.192 16 N -0.571 5.571 17 Si 0.806 3.194 18 H -0.190 1.190 19 H -0.195 1.195 20 H -0.196 1.196 21 C -0.067 4.067 22 C -0.135 4.135 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.242 0.758 31 H 0.071 0.929 32 H 0.105 0.895 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.001 0.999 40 H -0.001 1.001 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.063 0.937 44 H 0.068 0.932 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.109 -13.489 15.612 22.553 hybrid contribution -0.147 0.452 -0.252 0.538 sum -9.256 -13.037 15.360 22.171 Atomic orbital electron populations 1.21835 0.95076 1.01885 1.01926 1.21469 0.96498 0.94765 1.01442 1.20585 0.94998 0.96310 0.93387 1.22167 0.98375 0.93236 0.85199 1.86420 1.82061 1.53374 1.17090 1.21592 1.00672 0.99023 0.92876 1.22096 0.86989 0.99401 0.98432 1.61705 1.07425 1.56240 1.02278 1.22028 1.00849 0.94182 0.88756 1.22565 0.94116 0.87826 0.97169 1.87894 1.67357 1.27330 1.48929 1.19774 0.94554 0.85269 0.86944 1.21406 1.27331 1.01103 1.08364 0.92322 1.25953 0.97456 1.01243 0.94535 1.70077 1.42629 1.30058 1.14352 0.85142 0.78125 0.77550 0.78614 1.18982 1.19505 1.19581 1.22105 0.99303 0.95152 0.90160 1.21514 0.95115 1.00602 0.96254 0.92443 0.92248 0.92505 0.92555 0.91882 0.94236 0.92140 0.75786 0.92925 0.89479 0.93356 0.92110 0.90555 0.91097 0.93679 0.94640 0.99934 1.00118 0.92075 0.91615 0.93722 0.93240 0.90753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.17 71.98 0.66 -1.65 16 2 C -0.10 -1.94 4.23 30.59 0.13 -1.81 16 3 C -0.05 -1.10 0.38 -52.10 -0.02 -1.12 16 4 C 0.09 1.58 5.47 71.98 0.39 1.97 16 5 O -0.58 -9.88 12.35 -148.98 -1.84 -11.72 16 6 C -0.10 -2.42 4.56 30.65 0.14 -2.28 16 7 C 0.06 1.52 5.04 86.33 0.44 1.96 16 8 N -0.55 -16.92 4.53 -896.37 -4.06 -20.98 16 9 C 0.07 2.13 5.39 86.30 0.47 2.60 16 10 C 0.06 2.37 6.13 71.98 0.44 2.81 16 11 O -0.40 -20.42 10.28 -148.98 -1.53 -21.96 16 12 C 0.21 12.32 5.69 71.24 0.41 12.73 16 13 C -0.54 -33.70 9.43 25.60 0.24 -33.45 16 14 H 0.06 3.63 7.81 -2.91 -0.02 3.61 16 15 C 0.01 0.37 5.46 84.65 0.46 0.83 16 16 N -0.93 -57.23 13.29 21.45 0.28 -56.95 16 17 Si 0.98 45.54 29.54 68.60 2.03 47.57 16 18 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 21 C 0.06 1.56 5.18 86.32 0.45 2.01 16 22 C -0.10 -2.39 4.75 30.65 0.15 -2.25 16 23 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 24 H 0.06 0.86 6.29 -2.39 -0.02 0.85 16 25 H 0.06 0.86 6.70 -2.39 -0.02 0.84 16 26 H 0.06 1.09 4.92 -2.38 -0.01 1.08 16 27 H 0.06 1.26 7.51 -2.39 -0.02 1.24 16 28 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.91 6.62 -2.38 -0.02 0.89 16 30 H 0.39 3.25 9.12 -74.06 -0.68 2.58 16 31 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.09 1.66 6.42 -2.38 -0.02 1.65 16 33 H 0.05 1.08 6.54 -2.39 -0.02 1.07 16 34 H 0.06 1.76 6.67 -2.38 -0.02 1.74 16 35 H 0.08 2.36 7.79 -2.39 -0.02 2.34 16 36 H 0.07 1.73 7.99 -2.39 -0.02 1.71 16 37 H 0.05 1.66 8.14 -2.39 -0.02 1.65 16 38 H 0.04 1.37 6.72 -2.39 -0.02 1.35 16 39 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 40 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 41 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 42 H 0.07 1.78 7.93 -2.38 -0.02 1.76 16 43 H 0.04 1.02 6.48 -2.39 -0.02 1.00 16 44 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.07 1.74 7.90 -2.39 -0.02 1.73 16 Total: -1.00 -71.21 340.93 -0.49 -71.70 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 0.29 Total: 9.99 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: 4.35 Total: -17.66 kcal Atomic # 7 Polarization: -74.15 SS G_CDS: -3.78 Total: -77.93 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -3.37 Total: -33.67 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -71.21 -0.49 -71.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339060038.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.892 kcal (2) G-P(sol) polarization free energy of solvation -71.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds