Wall clock time and date at job start Mon Mar 30 2020 05:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.90414 * 2 1 4 4 C 1.53006 * 109.46789 * 300.35122 * 3 2 1 5 5 C 1.53003 * 109.46710 * 180.02562 * 4 3 2 6 6 O 1.42900 * 109.46693 * 179.97438 * 5 4 3 7 7 C 1.53988 * 109.91844 * 238.89785 * 2 1 3 8 8 C 1.54597 * 105.13894 * 241.86904 * 7 2 1 9 9 C 1.54934 * 102.92105 * 21.95728 * 8 7 2 10 10 N 1.47899 * 109.91778 * 121.29962 * 2 1 3 11 11 C 1.46899 * 111.00225 * 333.51765 * 10 2 1 12 12 C 1.53001 * 109.46964 * 189.99685 * 11 10 2 13 13 O 1.42902 * 109.47426 * 64.99617 * 12 11 10 14 14 C 1.42898 * 114.00113 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47132 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99789 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00003 * 180.02562 * 15 14 13 18 18 N 1.31523 * 119.99908 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00180 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47196 * 90.00030 * 19 17 15 21 21 H 1.48497 * 109.47071 * 210.00172 * 19 17 15 22 22 H 1.48498 * 109.47139 * 330.00198 * 19 17 15 23 23 H 1.08997 * 109.46453 * 179.65066 * 1 2 3 24 24 H 1.08997 * 109.47206 * 299.64713 * 1 2 3 25 25 H 1.09002 * 109.46825 * 59.65404 * 1 2 3 26 26 H 1.08996 * 109.46933 * 60.34803 * 3 2 1 27 27 H 1.09000 * 109.46957 * 180.35255 * 3 2 1 28 28 H 1.09007 * 109.46716 * 299.99373 * 4 3 2 29 29 H 1.08990 * 109.47256 * 59.99776 * 4 3 2 30 30 H 1.08996 * 109.46544 * 299.99395 * 5 4 3 31 31 H 1.08995 * 109.47465 * 59.99419 * 5 4 3 32 32 H 0.96698 * 113.99818 * 179.97438 * 6 5 4 33 33 H 1.09000 * 110.30935 * 122.95688 * 7 2 1 34 34 H 1.08994 * 110.31053 * 0.78547 * 7 2 1 35 35 H 1.09000 * 110.72471 * 140.31126 * 8 7 2 36 36 H 1.09001 * 110.72634 * 263.60146 * 8 7 2 37 37 H 1.08997 * 110.67221 * 81.01962 * 9 8 7 38 38 H 1.09002 * 110.66998 * 204.14972 * 9 8 7 39 39 H 1.09000 * 109.46654 * 309.99284 * 11 10 2 40 40 H 1.08994 * 109.47180 * 69.99648 * 11 10 2 41 41 H 1.08999 * 109.47156 * 184.99774 * 12 11 10 42 42 H 1.08999 * 109.46951 * 304.99443 * 12 11 10 43 43 H 1.09005 * 109.46746 * 300.00053 * 14 13 12 44 44 H 1.08995 * 109.47239 * 59.99938 * 14 13 12 45 45 H 0.97003 * 119.99790 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0510 1.4387 0.0000 4 6 1.5392 2.1663 -1.2449 5 6 2.0606 3.6047 -1.2452 6 8 1.5831 4.2841 -2.4081 7 6 2.0547 -0.7479 -1.2396 8 6 2.8537 -1.9470 -0.6796 9 6 2.2662 -2.1205 0.7435 10 7 2.0339 -0.7224 1.1881 11 6 1.0592 -0.6743 2.2861 12 6 1.7061 -1.2074 3.5660 13 8 2.7662 -0.3352 3.9630 14 6 3.4400 -0.7444 5.1549 15 6 4.5319 0.2425 5.4787 16 1 4.6947 1.0969 4.8385 17 6 5.3230 0.0545 6.5921 18 7 6.2763 0.9156 6.8743 19 14 5.0410 -1.4229 7.6997 20 1 5.8682 -2.5617 7.2263 21 1 5.4243 -1.0779 9.0923 22 1 3.6062 -1.8038 7.6612 23 1 -0.3632 -1.0277 -0.0063 24 1 -0.3633 0.5083 0.8931 25 1 -0.3633 0.5192 -0.8869 26 1 1.6966 1.9533 0.8931 27 1 3.1409 1.4304 -0.0063 28 1 1.8936 1.6516 -2.1380 29 1 0.4493 2.1745 -1.2386 30 1 1.7065 4.1196 -0.3521 31 1 3.1505 3.5962 -1.2516 32 1 1.8750 5.2037 -2.4741 33 1 2.7064 -0.0993 -1.8251 34 1 1.2226 -1.0995 -1.8496 35 1 2.6805 -2.8401 -1.2799 36 1 3.9173 -1.7133 -0.6319 37 1 1.3277 -2.6736 0.7075 38 1 2.9823 -2.6182 1.3973 39 1 0.7390 0.3558 2.4427 40 1 0.1955 -1.2887 2.0324 41 1 0.9589 -1.2550 4.3582 42 1 2.1055 -2.2049 3.3830 43 1 2.7284 -0.7820 5.9798 44 1 3.8753 -1.7324 5.0053 45 1 6.8332 0.7831 7.6575 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339062059.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:36 Heat of formation + Delta-G solvation = -101.219828 kcal Electronic energy + Delta-G solvation = -21847.755461 eV Core-core repulsion = 18672.039603 eV Total energy + Delta-G solvation = -3175.715858 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.03682 -37.22648 -36.69808 -34.08323 -32.86139 -32.23570 -30.27989 -28.54319 -26.97370 -26.46925 -24.89772 -22.40669 -21.99714 -21.75036 -20.27020 -18.58491 -17.31900 -16.79992 -16.14718 -15.91583 -15.54540 -15.48779 -14.76583 -14.41440 -14.12810 -13.94808 -13.71535 -13.51015 -12.94879 -12.73977 -12.50353 -12.26384 -12.20449 -12.00087 -11.72648 -11.37141 -11.22532 -11.10794 -10.99868 -10.90900 -10.77086 -10.66824 -10.51523 -10.37504 -10.23691 -10.03374 -9.81366 -9.10994 -8.76803 -8.38556 -8.13308 -6.06888 -4.04839 3.27261 3.33970 3.35772 3.83087 4.27118 4.39418 4.56150 4.62890 4.79642 4.86358 4.96907 5.05699 5.17107 5.24611 5.27307 5.36655 5.39678 5.47049 5.51677 5.56462 5.59537 5.65462 5.67779 5.79362 5.82216 5.89514 5.94865 5.95539 5.99953 6.05523 6.16087 6.22360 6.27484 6.36929 6.45219 6.66934 7.06438 7.15633 7.28265 7.46008 7.66194 8.12256 8.75162 9.06470 9.53303 11.06372 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.018478 B = 0.004220 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.949236 B = 6633.302217 C = 7508.524346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.095 3.905 3 C -0.095 4.095 4 C -0.120 4.120 5 C 0.073 3.927 6 O -0.580 6.580 7 C -0.122 4.122 8 C -0.123 4.123 9 C 0.035 3.965 10 N -0.490 5.490 11 C 0.053 3.947 12 C 0.064 3.936 13 O -0.364 6.364 14 C 0.168 3.832 15 C -0.513 4.513 16 H 0.083 0.917 17 C 0.071 3.929 18 N -0.897 5.897 19 Si 0.875 3.125 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.267 1.267 23 H 0.052 0.948 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.378 0.622 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.038 0.962 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.044 0.956 41 H 0.038 0.962 42 H 0.035 0.965 43 H -0.001 1.001 44 H -0.004 1.004 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.904 -2.140 -17.154 20.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.005 3.995 3 C -0.133 4.133 4 C -0.158 4.158 5 C -0.005 4.005 6 O -0.385 6.385 7 C -0.160 4.160 8 C -0.161 4.161 9 C -0.093 4.093 10 N -0.214 5.214 11 C -0.075 4.075 12 C -0.014 4.014 13 O -0.283 6.283 14 C 0.092 3.908 15 C -0.551 4.551 16 H 0.101 0.899 17 C -0.130 4.130 18 N -0.536 5.536 19 Si 0.702 3.298 20 H -0.200 1.200 21 H -0.209 1.209 22 H -0.192 1.192 23 H 0.071 0.929 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.224 0.776 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.057 0.943 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.017 0.983 44 H 0.013 0.987 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.502 -2.280 -17.000 20.652 hybrid contribution -0.614 -0.872 0.827 1.349 sum -12.116 -3.151 -16.173 20.452 Atomic orbital electron populations 1.22553 0.96424 1.01581 1.02664 1.21725 0.92594 0.94715 0.90439 1.21390 1.01726 0.93303 0.96878 1.21632 1.01446 0.93611 0.99066 1.22244 0.97673 0.93415 0.87124 1.86445 1.77356 1.29199 1.45493 1.22547 0.99648 0.97123 0.96702 1.22463 1.00674 0.97579 0.95393 1.23252 0.99439 0.90515 0.96114 1.64739 1.41798 1.10018 1.04831 1.22330 0.92542 1.01794 0.90852 1.22307 0.90952 0.93779 0.94377 1.88005 1.46924 1.48537 1.44786 1.20568 0.92046 0.95538 0.82606 1.20901 1.13559 1.10219 1.10430 0.89939 1.24764 0.94763 0.96381 0.97100 1.69885 1.20088 1.36074 1.27589 0.86863 0.79083 0.83447 0.80407 1.20000 1.20858 1.19187 0.92932 0.91786 0.91861 0.91379 0.90694 0.91295 0.91342 0.93496 0.93439 0.77573 0.90778 0.91716 0.91501 0.90560 0.94341 0.89876 0.90023 0.93844 0.94400 0.94657 0.98349 0.98681 0.92471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.82 6.73 37.16 0.25 -1.57 16 2 C 0.09 1.14 0.61 -130.53 -0.08 1.06 16 3 C -0.09 -1.17 4.48 -26.72 -0.12 -1.29 16 4 C -0.12 -1.27 4.99 -26.73 -0.13 -1.40 16 5 C 0.07 0.75 7.05 37.16 0.26 1.01 16 6 O -0.58 -5.96 13.66 -35.23 -0.48 -6.44 16 7 C -0.12 -1.29 5.62 -25.38 -0.14 -1.44 16 8 C -0.12 -1.37 7.06 -24.87 -0.18 -1.54 16 9 C 0.03 0.45 5.89 -1.89 -0.01 0.44 16 10 N -0.49 -7.26 4.82 -214.99 -1.04 -8.30 16 11 C 0.05 0.78 3.96 -3.82 -0.02 0.77 16 12 C 0.06 1.15 6.11 37.16 0.23 1.38 16 13 O -0.36 -8.70 10.27 -35.23 -0.36 -9.06 16 14 C 0.17 4.38 4.76 36.00 0.17 4.55 16 15 C -0.51 -15.56 9.99 -34.44 -0.34 -15.90 16 16 H 0.08 2.74 8.06 -52.48 -0.42 2.32 16 17 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 18 N -0.90 -28.06 13.96 55.43 0.77 -27.29 16 19 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 20 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 23 H 0.05 0.53 7.74 -51.93 -0.40 0.13 16 24 H 0.06 0.69 6.39 -51.93 -0.33 0.36 16 25 H 0.06 0.60 6.45 -51.93 -0.33 0.26 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.07 0.72 6.61 -51.93 -0.34 0.38 16 29 H 0.07 0.72 6.45 -51.93 -0.33 0.39 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.38 2.18 9.12 45.56 0.42 2.60 16 33 H 0.07 0.76 6.53 -51.93 -0.34 0.42 16 34 H 0.06 0.61 7.68 -51.93 -0.40 0.21 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.04 0.45 7.81 -51.93 -0.41 0.04 16 38 H 0.08 1.18 7.68 -51.93 -0.40 0.78 16 39 H 0.08 1.24 7.12 -51.93 -0.37 0.87 16 40 H 0.04 0.54 6.75 -51.93 -0.35 0.19 16 41 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.04 0.61 7.18 -51.93 -0.37 0.24 16 43 H 0.00 -0.03 7.20 -51.93 -0.37 -0.40 16 44 H 0.00 -0.11 7.57 -51.93 -0.39 -0.51 16 45 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 345.29 15.07 5.20 5.20 Total: -1.00 -33.66 345.29 -8.06 -41.72 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -7.28 Total: -1.01 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: -0.21 Total: -11.90 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: -0.26 Total: -35.59 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.84 Total: -15.51 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.66 -8.06 -41.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339062059.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.500 kcal (2) G-P(sol) polarization free energy of solvation -33.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds