Wall clock time and date at job start Mon Mar 30 2020 05:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.90414 * 2 1 4 4 C 1.53006 * 109.46789 * 300.35122 * 3 2 1 5 5 C 1.53003 * 109.46710 * 180.02562 * 4 3 2 6 6 O 1.42900 * 109.46693 * 179.97438 * 5 4 3 7 7 C 1.53988 * 109.91844 * 238.89785 * 2 1 3 8 8 C 1.54597 * 105.13894 * 241.86904 * 7 2 1 9 9 C 1.54934 * 102.92105 * 21.95728 * 8 7 2 10 10 N 1.47899 * 109.91778 * 121.29962 * 2 1 3 11 11 C 1.46899 * 111.00225 * 333.51765 * 10 2 1 12 12 C 1.53001 * 109.46964 * 189.99685 * 11 10 2 13 13 O 1.42902 * 109.47426 * 64.99617 * 12 11 10 14 14 C 1.42898 * 114.00113 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47132 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99789 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00003 * 180.02562 * 15 14 13 18 18 N 1.31523 * 119.99908 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00180 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47196 * 90.00030 * 19 17 15 21 21 H 1.48497 * 109.47071 * 210.00172 * 19 17 15 22 22 H 1.48498 * 109.47139 * 330.00198 * 19 17 15 23 23 H 1.08997 * 109.46453 * 179.65066 * 1 2 3 24 24 H 1.08997 * 109.47206 * 299.64713 * 1 2 3 25 25 H 1.09002 * 109.46825 * 59.65404 * 1 2 3 26 26 H 1.08996 * 109.46933 * 60.34803 * 3 2 1 27 27 H 1.09000 * 109.46957 * 180.35255 * 3 2 1 28 28 H 1.09007 * 109.46716 * 299.99373 * 4 3 2 29 29 H 1.08990 * 109.47256 * 59.99776 * 4 3 2 30 30 H 1.08996 * 109.46544 * 299.99395 * 5 4 3 31 31 H 1.08995 * 109.47465 * 59.99419 * 5 4 3 32 32 H 0.96698 * 113.99818 * 179.97438 * 6 5 4 33 33 H 1.09000 * 110.30935 * 122.95688 * 7 2 1 34 34 H 1.08994 * 110.31053 * 0.78547 * 7 2 1 35 35 H 1.09000 * 110.72471 * 140.31126 * 8 7 2 36 36 H 1.09001 * 110.72634 * 263.60146 * 8 7 2 37 37 H 1.08997 * 110.67221 * 81.01962 * 9 8 7 38 38 H 1.09002 * 110.66998 * 204.14972 * 9 8 7 39 39 H 1.09000 * 109.46654 * 309.99284 * 11 10 2 40 40 H 1.08994 * 109.47180 * 69.99648 * 11 10 2 41 41 H 1.08999 * 109.47156 * 184.99774 * 12 11 10 42 42 H 1.08999 * 109.46951 * 304.99443 * 12 11 10 43 43 H 1.09005 * 109.46746 * 300.00053 * 14 13 12 44 44 H 1.08995 * 109.47239 * 59.99938 * 14 13 12 45 45 H 0.97003 * 119.99790 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0510 1.4387 0.0000 4 6 1.5392 2.1663 -1.2449 5 6 2.0606 3.6047 -1.2452 6 8 1.5831 4.2841 -2.4081 7 6 2.0547 -0.7479 -1.2396 8 6 2.8537 -1.9470 -0.6796 9 6 2.2662 -2.1205 0.7435 10 7 2.0339 -0.7224 1.1881 11 6 1.0592 -0.6743 2.2861 12 6 1.7061 -1.2074 3.5660 13 8 2.7662 -0.3352 3.9630 14 6 3.4400 -0.7444 5.1549 15 6 4.5319 0.2425 5.4787 16 1 4.6947 1.0969 4.8385 17 6 5.3230 0.0545 6.5921 18 7 6.2763 0.9156 6.8743 19 14 5.0410 -1.4229 7.6997 20 1 5.8682 -2.5617 7.2263 21 1 5.4243 -1.0779 9.0923 22 1 3.6062 -1.8038 7.6612 23 1 -0.3632 -1.0277 -0.0063 24 1 -0.3633 0.5083 0.8931 25 1 -0.3633 0.5192 -0.8869 26 1 1.6966 1.9533 0.8931 27 1 3.1409 1.4304 -0.0063 28 1 1.8936 1.6516 -2.1380 29 1 0.4493 2.1745 -1.2386 30 1 1.7065 4.1196 -0.3521 31 1 3.1505 3.5962 -1.2516 32 1 1.8750 5.2037 -2.4741 33 1 2.7064 -0.0993 -1.8251 34 1 1.2226 -1.0995 -1.8496 35 1 2.6805 -2.8401 -1.2799 36 1 3.9173 -1.7133 -0.6319 37 1 1.3277 -2.6736 0.7075 38 1 2.9823 -2.6182 1.3973 39 1 0.7390 0.3558 2.4427 40 1 0.1955 -1.2887 2.0324 41 1 0.9589 -1.2550 4.3582 42 1 2.1055 -2.2049 3.3830 43 1 2.7284 -0.7820 5.9798 44 1 3.8753 -1.7324 5.0053 45 1 6.8332 0.7831 7.6575 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339062059.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:35 Heat of formation + Delta-G solvation = -127.308892 kcal Electronic energy + Delta-G solvation = -21848.886768 eV Core-core repulsion = 18672.039603 eV Total energy + Delta-G solvation = -3176.847165 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.02712 -38.55643 -37.92678 -35.18784 -34.77846 -33.56592 -31.22355 -30.33244 -28.50570 -27.38250 -25.84292 -23.97018 -23.55135 -22.87815 -21.31280 -19.56778 -19.01284 -18.14314 -17.46541 -17.11391 -16.84071 -16.51389 -16.39875 -15.96812 -15.46074 -14.87733 -14.82498 -14.69514 -14.51011 -14.04504 -13.73027 -13.63131 -13.30271 -13.27943 -12.87432 -12.69486 -12.61624 -12.35091 -12.24226 -12.07569 -11.91546 -11.84814 -11.74739 -11.62443 -11.38659 -11.30712 -11.23455 -10.91395 -10.85219 -10.28304 -9.16791 -8.36766 -6.44096 1.32110 1.35478 1.46402 2.29383 2.88821 2.95691 3.14333 3.44072 3.64624 3.80435 3.96200 4.09656 4.15602 4.26538 4.29830 4.33019 4.42233 4.50696 4.51409 4.52994 4.56324 4.61776 4.64637 4.69494 4.78499 4.80578 4.91937 4.94508 4.97916 5.03620 5.07469 5.12616 5.16838 5.27048 5.30750 5.44811 5.45469 5.47847 5.95386 6.17125 6.25215 6.60082 6.82476 6.86779 7.20734 8.80671 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.018478 B = 0.004220 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.949236 B = 6633.302217 C = 7508.524346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.092 3.908 3 C -0.090 4.090 4 C -0.110 4.110 5 C 0.072 3.928 6 O -0.592 6.592 7 C -0.117 4.117 8 C -0.120 4.120 9 C 0.033 3.967 10 N -0.526 5.526 11 C 0.061 3.939 12 C 0.055 3.945 13 O -0.392 6.392 14 C 0.180 3.820 15 C -0.542 4.542 16 H 0.028 0.972 17 C 0.013 3.987 18 N -0.943 5.943 19 Si 0.956 3.044 20 H -0.260 1.260 21 H -0.272 1.272 22 H -0.246 1.246 23 H 0.062 0.938 24 H 0.057 0.943 25 H 0.076 0.924 26 H 0.047 0.953 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.396 0.604 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.054 0.946 42 H 0.043 0.957 43 H 0.009 0.991 44 H 0.005 0.995 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.807 -4.302 -17.676 22.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.003 3.997 3 C -0.128 4.128 4 C -0.148 4.148 5 C -0.006 4.006 6 O -0.401 6.401 7 C -0.155 4.155 8 C -0.158 4.158 9 C -0.094 4.094 10 N -0.250 5.250 11 C -0.067 4.067 12 C -0.022 4.022 13 O -0.311 6.311 14 C 0.104 3.896 15 C -0.580 4.580 16 H 0.046 0.954 17 C -0.185 4.185 18 N -0.583 5.583 19 Si 0.777 3.223 20 H -0.185 1.185 21 H -0.197 1.197 22 H -0.170 1.170 23 H 0.081 0.919 24 H 0.076 0.924 25 H 0.095 0.905 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.246 0.754 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.072 0.928 42 H 0.061 0.939 43 H 0.027 0.973 44 H 0.023 0.977 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.418 -4.422 -17.551 22.530 hybrid contribution 0.017 -0.076 0.911 0.914 sum -13.401 -4.498 -16.640 21.834 Atomic orbital electron populations 1.22486 0.94765 1.02328 1.03029 1.21789 0.93878 0.93916 0.90097 1.21318 1.00227 0.94262 0.97038 1.21523 1.01593 0.93607 0.98062 1.22209 0.97643 0.93432 0.87286 1.86389 1.77600 1.30839 1.45225 1.22540 1.00227 0.96654 0.96094 1.22451 0.99654 0.98879 0.94787 1.23258 0.99925 0.89648 0.96588 1.64652 1.42749 1.11499 1.06063 1.22254 0.93138 1.01669 0.89657 1.22678 0.89759 0.93448 0.96357 1.87965 1.48725 1.50537 1.43912 1.20264 0.91165 0.94268 0.83889 1.21154 1.16099 1.10096 1.10605 0.95396 1.25837 0.93825 1.00170 0.98637 1.70042 1.21148 1.38522 1.28586 0.85604 0.80312 0.78576 0.77803 1.18483 1.19682 1.16984 0.91892 0.92419 0.90547 0.93376 0.93007 0.90758 0.90781 0.93567 0.93526 0.75421 0.90782 0.89598 0.89057 0.92237 0.92401 0.91913 0.90980 0.90674 0.92833 0.93859 0.97337 0.97749 0.91831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 6.73 71.98 0.48 -2.63 16 2 C 0.09 2.13 0.61 3.67 0.00 2.13 16 3 C -0.09 -2.27 4.48 30.60 0.14 -2.14 16 4 C -0.11 -2.25 4.99 30.60 0.15 -2.10 16 5 C 0.07 1.46 7.05 71.98 0.51 1.97 16 6 O -0.59 -11.53 13.66 -148.98 -2.03 -13.57 16 7 C -0.12 -2.25 5.62 31.47 0.18 -2.07 16 8 C -0.12 -2.47 7.06 31.80 0.22 -2.25 16 9 C 0.03 0.82 5.89 86.65 0.51 1.33 16 10 N -0.53 -15.29 4.82 -834.11 -4.02 -19.31 16 11 C 0.06 1.73 3.96 86.30 0.34 2.08 16 12 C 0.05 1.92 6.11 71.98 0.44 2.36 16 13 O -0.39 -19.06 10.27 -148.98 -1.53 -20.59 16 14 C 0.18 9.39 4.76 71.24 0.34 9.73 16 15 C -0.54 -34.06 9.99 25.60 0.26 -33.81 16 16 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 17 C 0.01 0.79 5.47 84.65 0.46 1.25 16 18 N -0.94 -60.51 13.96 21.45 0.30 -60.21 16 19 Si 0.96 44.30 27.47 68.60 1.88 46.19 16 20 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 22 H -0.25 -10.54 6.54 99.48 0.65 -9.89 16 23 H 0.06 1.05 7.74 -2.39 -0.02 1.03 16 24 H 0.06 1.15 6.39 -2.39 -0.02 1.13 16 25 H 0.08 1.22 6.45 -2.39 -0.02 1.21 16 26 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.07 1.45 6.61 -2.38 -0.02 1.44 16 29 H 0.07 1.44 6.45 -2.39 -0.02 1.43 16 30 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.40 4.15 9.12 -74.06 -0.68 3.48 16 33 H 0.07 1.42 6.53 -2.39 -0.02 1.41 16 34 H 0.09 1.31 7.68 -2.39 -0.02 1.29 16 35 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.06 1.18 7.81 -2.39 -0.02 1.16 16 38 H 0.06 1.77 7.68 -2.39 -0.02 1.75 16 39 H 0.07 2.17 7.12 -2.39 -0.02 2.15 16 40 H 0.08 1.66 6.75 -2.39 -0.02 1.65 16 41 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.04 1.44 7.18 -2.39 -0.02 1.42 16 43 H 0.01 0.44 7.20 -2.38 -0.02 0.43 16 44 H 0.00 0.24 7.57 -2.39 -0.02 0.22 16 45 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 Total: -1.00 -74.94 345.29 -1.15 -76.09 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.22 Total: 15.57 kcal Atomic # 6 Polarization: -28.20 SS G_CDS: 4.03 Total: -24.16 kcal Atomic # 7 Polarization: -75.80 SS G_CDS: -3.72 Total: -79.52 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -3.57 Total: -34.16 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.88 Total: 46.19 kcal Total: -74.94 -1.15 -76.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339062059.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.220 kcal (2) G-P(sol) polarization free energy of solvation -74.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds