Wall clock time and date at job start Mon Mar 30 2020 04:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45197 * 109.46835 * 2 1 4 4 C 1.34235 * 116.99571 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00168 * 359.97438 * 4 3 2 6 6 C 1.50704 * 119.99687 * 180.02562 * 4 3 2 7 7 H 1.09002 * 110.37009 * 59.29584 * 6 4 3 8 8 C 1.54385 * 110.40854 * 296.94554 * 6 4 3 9 9 C 1.54266 * 105.05754 * 217.25100 * 8 6 4 10 10 C 1.54375 * 105.06062 * 0.02562 * 9 8 6 11 11 N 1.48556 * 110.50887 * 181.71627 * 6 4 3 12 12 C 1.46901 * 110.99998 * 277.86514 * 11 6 4 13 13 C 1.52999 * 109.47080 * 170.00030 * 12 11 6 14 14 O 1.42905 * 109.47224 * 65.00452 * 13 12 11 15 15 C 1.42895 * 114.00092 * 179.97438 * 14 13 12 16 16 C 1.50705 * 109.47011 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99754 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00026 * 180.02562 * 16 15 14 19 19 N 1.31506 * 120.00137 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99792 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.47275 * 90.00413 * 20 18 16 22 22 H 1.48502 * 109.46952 * 210.00310 * 20 18 16 23 23 H 1.48498 * 109.47217 * 329.99940 * 20 18 16 24 24 H 1.08998 * 109.47596 * 299.99991 * 1 2 3 25 25 H 1.09007 * 109.47389 * 60.00191 * 1 2 3 26 26 H 1.09006 * 109.46989 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46896 * 240.00272 * 2 1 3 28 28 H 1.08993 * 109.47104 * 120.00345 * 2 1 3 29 29 H 1.08995 * 110.32619 * 336.14630 * 8 6 4 30 30 H 1.09000 * 110.32317 * 98.35663 * 8 6 4 31 31 H 1.09001 * 110.32231 * 118.89861 * 9 8 6 32 32 H 1.08996 * 110.32002 * 241.00300 * 9 8 6 33 33 H 1.08996 * 110.41381 * 142.63179 * 10 9 8 34 34 H 1.09007 * 110.41242 * 265.07073 * 10 9 8 35 35 H 1.09001 * 109.47468 * 290.00034 * 12 11 6 36 36 H 1.08996 * 109.47029 * 50.00191 * 12 11 6 37 37 H 1.09001 * 109.47031 * 185.00124 * 13 12 11 38 38 H 1.08997 * 109.47563 * 305.00045 * 13 12 11 39 39 H 1.08994 * 109.47439 * 299.99876 * 15 14 13 40 40 H 1.09000 * 109.47139 * 60.00150 * 15 14 13 41 41 H 0.96998 * 120.00552 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.5840 3.4869 0.8791 8 6 3.5199 3.6863 -1.2892 9 6 4.7566 4.5288 -1.6641 10 6 5.8006 4.2177 -0.5703 11 7 5.4048 2.8869 -0.0424 12 6 5.9625 2.6651 1.2984 13 6 7.4597 2.3710 1.1857 14 8 8.1352 3.5251 0.6816 15 6 9.5468 3.3558 0.5379 16 6 10.1531 4.6271 0.0017 17 1 9.5233 5.4788 -0.2087 18 6 11.5117 4.7024 -0.2212 19 7 12.0407 5.8115 -0.6896 20 14 12.6008 3.2288 0.1421 21 1 12.7005 2.3762 -1.0696 22 1 13.9553 3.6981 0.5300 23 1 12.0125 2.4409 1.2549 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.2906 2.9763 -2.0837 30 1 2.6637 4.3338 -1.1003 31 1 5.1341 4.2323 -2.6427 32 1 4.5068 5.5898 -1.6610 33 1 6.8009 4.1741 -1.0010 34 1 5.7583 4.9674 0.2198 35 1 5.8122 3.5570 1.9066 36 1 5.4600 1.8180 1.7653 37 1 7.8556 2.1193 2.1696 38 1 7.6154 1.5332 0.5062 39 1 9.9857 3.1248 1.5084 40 1 9.7461 2.5383 -0.1549 41 1 12.9965 5.8646 -0.8461 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339096403.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:56 Heat of formation + Delta-G solvation = -127.712383 kcal Electronic energy + Delta-G solvation = -21351.512976 eV Core-core repulsion = 18038.815220 eV Total energy + Delta-G solvation = -3312.697756 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.71847 -38.72155 -36.76097 -36.41713 -32.99252 -32.28679 -31.96394 -29.53616 -28.58972 -27.05577 -24.21814 -22.68458 -21.99402 -21.68762 -20.65288 -20.26219 -17.78200 -16.89658 -16.75239 -16.68867 -15.92884 -15.54583 -14.92111 -14.35674 -14.34284 -14.13338 -13.95564 -13.43847 -13.21368 -12.95768 -12.66331 -12.56743 -12.35103 -12.22885 -11.90603 -11.72669 -11.43665 -11.23955 -11.04223 -10.84736 -10.71348 -10.68885 -10.62311 -10.44275 -10.19890 -9.84026 -9.15523 -8.80454 -8.44009 -8.35449 -6.10428 -4.09065 2.19222 2.43109 3.27239 3.33952 3.36245 4.07116 4.37643 4.46948 4.51075 4.64959 4.70637 4.72115 4.87726 4.95374 4.99170 5.21762 5.25519 5.38144 5.42996 5.47025 5.55728 5.59666 5.66017 5.78432 5.82535 5.94699 6.00758 6.04421 6.21587 6.31630 6.33373 6.59655 6.67411 6.95511 7.03962 7.13137 7.62384 7.77687 8.04147 8.68403 8.99960 9.49582 11.02488 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.034308 B = 0.003693 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.950300 B = 7580.517920 C = 8113.106287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.362 6.362 4 C 0.469 3.531 5 O -0.485 6.485 6 C 0.066 3.934 7 H 0.087 0.913 8 C -0.107 4.107 9 C -0.128 4.128 10 C 0.045 3.955 11 N -0.486 5.486 12 C 0.052 3.948 13 C 0.066 3.934 14 O -0.379 6.379 15 C 0.169 3.831 16 C -0.516 4.516 17 H 0.082 0.918 18 C 0.072 3.928 19 N -0.896 5.896 20 Si 0.875 3.125 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.267 1.267 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.113 0.887 34 H 0.050 0.950 35 H 0.045 0.955 36 H 0.079 0.921 37 H 0.042 0.958 38 H 0.050 0.950 39 H 0.001 0.999 40 H -0.001 1.001 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.603 -8.309 1.719 24.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.280 6.280 4 C 0.310 3.690 5 O -0.370 6.370 6 C -0.044 4.044 7 H 0.104 0.896 8 C -0.145 4.145 9 C -0.166 4.166 10 C -0.082 4.082 11 N -0.212 5.212 12 C -0.076 4.076 13 C -0.012 4.012 14 O -0.298 6.298 15 C 0.094 3.906 16 C -0.554 4.554 17 H 0.100 0.900 18 C -0.130 4.130 19 N -0.535 5.535 20 Si 0.702 3.298 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.191 1.191 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.131 0.869 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.097 0.903 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.018 0.982 40 H 0.017 0.983 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.102 -8.822 1.294 23.833 hybrid contribution 0.619 -0.621 0.861 1.229 sum -21.483 -9.443 2.155 23.565 Atomic orbital electron populations 1.21800 0.92698 1.02874 1.03485 1.22986 0.95224 0.80454 1.02586 1.86496 1.24800 1.32184 1.84499 1.23508 0.80263 0.92472 0.72790 1.90672 1.60209 1.42588 1.43503 1.22260 0.91765 0.89330 1.01072 0.89584 1.22212 0.98849 0.98522 0.94932 1.22398 0.94424 0.99516 1.00242 1.23245 1.00953 0.87541 0.96474 1.65082 1.01639 1.31505 1.22925 1.22318 0.95330 1.00683 0.89287 1.22254 0.90802 0.90554 0.97621 1.87879 1.21966 1.34641 1.85358 1.20573 0.77521 0.97844 0.94693 1.20877 0.92958 0.98480 1.43110 0.89999 1.24758 0.97545 0.95997 0.94671 1.69868 1.12366 1.26199 1.45049 0.86856 0.80268 0.83290 0.79370 1.19927 1.20878 1.19124 0.91528 0.91464 0.90335 0.91261 0.91379 0.90850 0.90179 0.90629 0.90862 0.86877 0.93175 0.93658 0.90287 0.93977 0.93158 0.98151 0.98344 0.92411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.29 37.16 0.38 -0.54 16 2 C 0.06 0.56 6.19 37.16 0.23 0.79 16 3 O -0.36 -4.13 10.21 -39.27 -0.40 -4.53 16 4 C 0.47 6.36 6.92 36.01 0.25 6.61 16 5 O -0.48 -8.08 15.59 -18.75 -0.29 -8.37 16 6 C 0.07 0.84 2.78 -67.22 -0.19 0.65 16 7 H 0.09 0.95 8.00 -51.93 -0.42 0.54 16 8 C -0.11 -1.16 6.53 -25.34 -0.17 -1.33 16 9 C -0.13 -1.57 7.00 -25.35 -0.18 -1.75 16 10 C 0.04 0.70 5.34 -2.20 -0.01 0.69 16 11 N -0.49 -7.68 4.61 -223.52 -1.03 -8.71 16 12 C 0.05 0.82 5.19 -3.82 -0.02 0.80 16 13 C 0.07 1.22 6.26 37.16 0.23 1.45 16 14 O -0.38 -8.66 7.81 -35.23 -0.28 -8.94 16 15 C 0.17 4.32 4.76 36.01 0.17 4.49 16 16 C -0.52 -15.22 9.99 -34.44 -0.34 -15.57 16 17 H 0.08 2.61 8.06 -52.49 -0.42 2.19 16 18 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 19 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 20 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 21 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 23 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 24 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 28 H 0.07 0.62 8.13 -51.93 -0.42 0.19 16 29 H 0.07 0.80 7.85 -51.93 -0.41 0.40 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.11 2.19 6.83 -51.93 -0.35 1.83 16 34 H 0.05 0.79 7.75 -51.93 -0.40 0.39 16 35 H 0.05 0.68 7.77 -51.93 -0.40 0.28 16 36 H 0.08 1.16 7.35 -51.93 -0.38 0.78 16 37 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.00 0.02 7.20 -51.93 -0.37 -0.35 16 40 H 0.00 -0.03 7.57 -51.93 -0.39 -0.42 16 41 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 335.21 15.07 5.05 5.05 Total: -1.00 -33.03 335.21 -7.53 -40.55 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -6.95 Total: -3.55 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: 0.26 Total: -1.68 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: -0.26 Total: -35.55 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.97 Total: -21.84 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.03 -7.53 -40.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339096403.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.158 kcal (2) G-P(sol) polarization free energy of solvation -33.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds