Wall clock time and date at job start Mon Mar 30 2020 04:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45197 * 109.46835 * 2 1 4 4 C 1.34235 * 116.99571 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00168 * 359.97438 * 4 3 2 6 6 C 1.50704 * 119.99687 * 180.02562 * 4 3 2 7 7 H 1.09002 * 110.37009 * 59.29584 * 6 4 3 8 8 C 1.54385 * 110.40854 * 296.94554 * 6 4 3 9 9 C 1.54266 * 105.05754 * 217.25100 * 8 6 4 10 10 C 1.54375 * 105.06062 * 0.02562 * 9 8 6 11 11 N 1.48556 * 110.50887 * 181.71627 * 6 4 3 12 12 C 1.46901 * 110.99998 * 277.86514 * 11 6 4 13 13 C 1.52999 * 109.47080 * 170.00030 * 12 11 6 14 14 O 1.42905 * 109.47224 * 65.00452 * 13 12 11 15 15 C 1.42895 * 114.00092 * 179.97438 * 14 13 12 16 16 C 1.50705 * 109.47011 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99754 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00026 * 180.02562 * 16 15 14 19 19 N 1.31506 * 120.00137 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99792 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.47275 * 90.00413 * 20 18 16 22 22 H 1.48502 * 109.46952 * 210.00310 * 20 18 16 23 23 H 1.48498 * 109.47217 * 329.99940 * 20 18 16 24 24 H 1.08998 * 109.47596 * 299.99991 * 1 2 3 25 25 H 1.09007 * 109.47389 * 60.00191 * 1 2 3 26 26 H 1.09006 * 109.46989 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46896 * 240.00272 * 2 1 3 28 28 H 1.08993 * 109.47104 * 120.00345 * 2 1 3 29 29 H 1.08995 * 110.32619 * 336.14630 * 8 6 4 30 30 H 1.09000 * 110.32317 * 98.35663 * 8 6 4 31 31 H 1.09001 * 110.32231 * 118.89861 * 9 8 6 32 32 H 1.08996 * 110.32002 * 241.00300 * 9 8 6 33 33 H 1.08996 * 110.41381 * 142.63179 * 10 9 8 34 34 H 1.09007 * 110.41242 * 265.07073 * 10 9 8 35 35 H 1.09001 * 109.47468 * 290.00034 * 12 11 6 36 36 H 1.08996 * 109.47029 * 50.00191 * 12 11 6 37 37 H 1.09001 * 109.47031 * 185.00124 * 13 12 11 38 38 H 1.08997 * 109.47563 * 305.00045 * 13 12 11 39 39 H 1.08994 * 109.47439 * 299.99876 * 15 14 13 40 40 H 1.09000 * 109.47139 * 60.00150 * 15 14 13 41 41 H 0.96998 * 120.00552 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.5840 3.4869 0.8791 8 6 3.5199 3.6863 -1.2892 9 6 4.7566 4.5288 -1.6641 10 6 5.8006 4.2177 -0.5703 11 7 5.4048 2.8869 -0.0424 12 6 5.9625 2.6651 1.2984 13 6 7.4597 2.3710 1.1857 14 8 8.1352 3.5251 0.6816 15 6 9.5468 3.3558 0.5379 16 6 10.1531 4.6271 0.0017 17 1 9.5233 5.4788 -0.2087 18 6 11.5117 4.7024 -0.2212 19 7 12.0407 5.8115 -0.6896 20 14 12.6008 3.2288 0.1421 21 1 12.7005 2.3762 -1.0696 22 1 13.9553 3.6981 0.5300 23 1 12.0125 2.4409 1.2549 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.2906 2.9763 -2.0837 30 1 2.6637 4.3338 -1.1003 31 1 5.1341 4.2323 -2.6427 32 1 4.5068 5.5898 -1.6610 33 1 6.8009 4.1741 -1.0010 34 1 5.7583 4.9674 0.2198 35 1 5.8122 3.5570 1.9066 36 1 5.4600 1.8180 1.7653 37 1 7.8556 2.1193 2.1696 38 1 7.6154 1.5332 0.5062 39 1 9.9857 3.1248 1.5084 40 1 9.7461 2.5383 -0.1549 41 1 12.9965 5.8646 -0.8461 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339096403.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:55 Heat of formation + Delta-G solvation = -150.185033 kcal Electronic energy + Delta-G solvation = -21352.487463 eV Core-core repulsion = 18038.815220 eV Total energy + Delta-G solvation = -3313.672243 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.75163 -39.87343 -38.39386 -37.49188 -34.96343 -33.75396 -32.68901 -30.67618 -30.30471 -28.68246 -25.13398 -24.03813 -23.59299 -22.99315 -21.74399 -21.34507 -19.08016 -18.74594 -17.84166 -17.72638 -17.43444 -16.94067 -16.50122 -16.08871 -15.50313 -15.17601 -15.07355 -14.93264 -14.52653 -14.15950 -13.98169 -13.79564 -13.57936 -13.23442 -13.04576 -12.97475 -12.74160 -12.49636 -12.46749 -12.28889 -12.09164 -12.03396 -11.83552 -11.63928 -11.51291 -11.32373 -11.24292 -10.92177 -10.32976 -9.56054 -8.37132 -6.43773 1.15458 1.32654 1.34431 1.45283 1.51377 2.28605 2.94018 2.95618 3.06619 3.50405 3.53892 3.92475 3.94355 4.01630 4.10219 4.19843 4.26208 4.27370 4.36039 4.46201 4.53774 4.60288 4.63513 4.72861 4.82889 4.86355 4.94092 4.94950 5.00297 5.05562 5.15219 5.20505 5.30586 5.43929 5.45146 5.79166 5.90017 5.94731 6.59247 6.73039 6.77157 7.20274 8.79500 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.034308 B = 0.003693 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.950300 B = 7580.517920 C = 8113.106287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.053 3.947 3 O -0.357 6.357 4 C 0.474 3.526 5 O -0.523 6.523 6 C 0.064 3.936 7 H 0.110 0.890 8 C -0.098 4.098 9 C -0.122 4.122 10 C 0.047 3.953 11 N -0.508 5.508 12 C 0.059 3.941 13 C 0.059 3.941 14 O -0.392 6.392 15 C 0.179 3.821 16 C -0.537 4.537 17 H 0.036 0.964 18 C 0.015 3.985 19 N -0.940 5.940 20 Si 0.950 3.050 21 H -0.263 1.263 22 H -0.272 1.272 23 H -0.249 1.249 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.098 0.902 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.113 0.887 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.067 0.933 34 H 0.046 0.954 35 H 0.053 0.947 36 H 0.093 0.907 37 H 0.059 0.941 38 H 0.042 0.958 39 H 0.009 0.991 40 H 0.002 0.998 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.180 -9.732 2.463 26.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.021 4.021 3 O -0.274 6.274 4 C 0.317 3.683 5 O -0.411 6.411 6 C -0.045 4.045 7 H 0.127 0.873 8 C -0.136 4.136 9 C -0.160 4.160 10 C -0.080 4.080 11 N -0.234 5.234 12 C -0.069 4.069 13 C -0.018 4.018 14 O -0.312 6.312 15 C 0.104 3.896 16 C -0.575 4.575 17 H 0.055 0.945 18 C -0.183 4.183 19 N -0.579 5.579 20 Si 0.772 3.228 21 H -0.188 1.188 22 H -0.197 1.197 23 H -0.173 1.173 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.117 0.883 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.131 0.869 31 H 0.086 0.914 32 H 0.112 0.888 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.111 0.889 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.027 0.973 40 H 0.020 0.980 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -23.728 -10.240 2.042 25.923 hybrid contribution 0.996 -0.144 0.609 1.177 sum -22.731 -10.383 2.651 25.131 Atomic orbital electron populations 1.21814 0.90106 1.04334 1.03864 1.23280 0.97203 0.79253 1.02340 1.86494 1.23399 1.33632 1.83827 1.23640 0.80728 0.92269 0.71712 1.90660 1.61173 1.43738 1.45489 1.22380 0.89640 0.89495 1.03021 0.87264 1.22234 0.98989 0.98454 0.93878 1.22365 0.94030 1.01119 0.98486 1.23047 0.99830 0.87797 0.97363 1.64961 1.04072 1.31390 1.22980 1.22249 0.93337 1.01565 0.89768 1.22517 0.92458 0.88890 0.97935 1.87877 1.20620 1.36777 1.85882 1.20281 0.79059 0.95622 0.94675 1.21104 0.93332 0.98957 1.44124 0.94529 1.25750 0.99049 0.99517 0.93983 1.70010 1.13219 1.28756 1.45953 0.85684 0.78076 0.79017 0.80035 1.18803 1.19708 1.17255 0.91077 0.91103 0.88344 0.91737 0.91542 0.90914 0.86861 0.91353 0.88817 0.91438 0.93559 0.92867 0.88855 0.92275 0.94016 0.97287 0.97985 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 10.29 71.98 0.74 -0.65 16 2 C 0.05 0.87 6.19 71.98 0.45 1.32 16 3 O -0.36 -7.41 10.21 -51.47 -0.53 -7.94 16 4 C 0.47 12.16 6.92 71.24 0.49 12.65 16 5 O -0.52 -17.10 15.59 21.97 0.34 -16.75 16 6 C 0.06 1.51 2.78 44.32 0.12 1.63 16 7 H 0.11 2.10 8.00 -2.39 -0.02 2.08 16 8 C -0.10 -1.89 6.53 31.49 0.21 -1.69 16 9 C -0.12 -2.89 7.00 31.49 0.22 -2.67 16 10 C 0.05 1.50 5.34 86.45 0.46 1.97 16 11 N -0.51 -15.86 4.61 -861.08 -3.97 -19.83 16 12 C 0.06 1.81 5.19 86.30 0.45 2.26 16 13 C 0.06 2.19 6.26 71.98 0.45 2.64 16 14 O -0.39 -18.29 7.81 -148.98 -1.16 -19.45 16 15 C 0.18 9.23 4.76 71.24 0.34 9.57 16 16 C -0.54 -32.77 9.99 25.60 0.26 -32.51 16 17 H 0.04 2.48 8.06 -2.91 -0.02 2.45 16 18 C 0.02 0.90 5.47 84.66 0.46 1.37 16 19 N -0.94 -59.25 13.96 21.45 0.30 -58.95 16 20 Si 0.95 44.38 27.47 68.60 1.88 46.26 16 21 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 23 H -0.25 -10.86 6.54 99.48 0.65 -10.20 16 24 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 26 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 27 H 0.06 1.13 8.13 -2.39 -0.02 1.11 16 28 H 0.07 1.12 8.13 -2.39 -0.02 1.10 16 29 H 0.07 1.44 7.85 -2.39 -0.02 1.42 16 30 H 0.11 1.49 8.14 -2.39 -0.02 1.48 16 31 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.07 2.79 6.83 -2.39 -0.02 2.77 16 34 H 0.05 1.48 7.75 -2.38 -0.02 1.46 16 35 H 0.05 1.54 7.77 -2.39 -0.02 1.53 16 36 H 0.09 2.61 7.35 -2.39 -0.02 2.59 16 37 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.04 1.60 8.14 -2.39 -0.02 1.59 16 39 H 0.01 0.47 7.20 -2.39 -0.02 0.45 16 40 H 0.00 0.12 7.57 -2.39 -0.02 0.10 16 41 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -73.57 335.21 2.44 -71.13 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 0.93 Total: 9.65 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: 4.65 Total: -4.11 kcal Atomic # 7 Polarization: -75.11 SS G_CDS: -3.67 Total: -78.79 kcal Atomic # 8 Polarization: -42.80 SS G_CDS: -1.35 Total: -44.14 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.88 Total: 46.26 kcal Total: -73.57 2.44 -71.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339096403.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.055 kcal (2) G-P(sol) polarization free energy of solvation -73.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds