Wall clock time and date at job start Mon Mar 30 2020 05:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.46774 * 2 1 4 4 C 1.52993 * 109.53496 * 305.28362 * 3 2 1 5 5 O 1.42897 * 109.47289 * 304.65352 * 4 3 2 6 6 C 1.53117 * 109.50057 * 185.18358 * 3 2 1 7 7 C 1.53119 * 109.15889 * 297.71223 * 6 3 2 8 8 C 1.53037 * 109.28168 * 302.34903 * 7 6 3 9 9 N 1.46844 * 109.52395 * 59.18138 * 8 7 6 10 10 C 1.46900 * 110.99907 * 174.16550 * 9 8 7 11 11 C 1.52998 * 109.47342 * 66.04074 * 10 9 8 12 12 O 1.42901 * 109.47105 * 65.00198 * 11 10 9 13 13 C 1.42893 * 114.00125 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.47240 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00113 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00059 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99746 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00098 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.46902 * 89.99470 * 18 16 14 20 20 H 1.48501 * 109.47256 * 209.99872 * 18 16 14 21 21 H 1.48504 * 109.46847 * 330.00023 * 18 16 14 22 22 C 1.46854 * 111.19436 * 298.25929 * 9 8 7 23 23 H 1.08996 * 109.47003 * 65.34291 * 1 2 3 24 24 H 1.09000 * 109.46621 * 185.33668 * 1 2 3 25 25 H 1.08999 * 109.47178 * 305.34143 * 1 2 3 26 26 H 1.08992 * 109.47140 * 240.00353 * 2 1 3 27 27 H 1.09002 * 109.47120 * 119.99782 * 2 1 3 28 28 H 1.09003 * 109.47633 * 64.65802 * 4 3 2 29 29 H 1.08999 * 109.47070 * 184.65655 * 4 3 2 30 30 H 0.96699 * 114.00347 * 180.02562 * 5 4 3 31 31 H 1.08997 * 109.52154 * 177.81440 * 6 3 2 32 32 H 1.08993 * 109.52325 * 57.61659 * 6 3 2 33 33 H 1.09002 * 109.50508 * 62.29065 * 7 6 3 34 34 H 1.09000 * 109.50346 * 182.36736 * 7 6 3 35 35 H 1.09003 * 109.46413 * 179.19667 * 8 7 6 36 36 H 1.08998 * 109.45720 * 299.16168 * 8 7 6 37 37 H 1.09005 * 109.46890 * 186.04564 * 10 9 8 38 38 H 1.08997 * 109.46974 * 306.03809 * 10 9 8 39 39 H 1.09004 * 109.47053 * 184.99926 * 11 10 9 40 40 H 1.08998 * 109.47242 * 305.00094 * 11 10 9 41 41 H 1.09002 * 109.47371 * 299.99805 * 13 12 11 42 42 H 1.09000 * 109.47221 * 60.00133 * 13 12 11 43 43 H 0.97003 * 120.00086 * 180.02562 * 17 16 14 44 44 H 1.09001 * 109.45905 * 181.76413 * 22 9 8 45 45 H 1.09004 * 109.45933 * 301.73544 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.4253 2.2025 -1.1770 5 8 1.7067 1.5062 -2.3927 6 6 3.5656 1.4454 -0.1304 7 6 4.1749 0.7355 1.0818 8 6 3.7167 1.4380 2.3618 9 7 2.2506 1.4078 2.4403 10 6 1.7808 1.9502 3.7221 11 6 2.1190 3.4403 3.8001 12 8 1.3856 4.1482 2.7985 13 6 1.6298 5.5560 2.7855 14 6 0.8098 6.1981 1.6963 15 1 0.1662 5.5917 1.0762 16 6 0.8804 7.5598 1.4919 17 7 0.1645 8.1201 0.5416 18 14 1.9930 8.6088 2.5648 19 1 3.3395 8.6964 1.9447 20 1 1.4168 9.9716 2.6918 21 1 2.1072 7.9922 3.9110 22 6 1.6436 2.1245 1.3114 23 1 -0.3633 0.4287 -0.9339 24 1 -0.3632 -1.0232 0.0956 25 1 -0.3633 0.5944 0.8383 26 1 1.8934 -0.5137 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 0.3462 2.2732 -1.0402 29 1 1.8517 3.2044 -1.2251 30 1 1.3465 1.9323 -3.1825 31 1 3.9259 2.4734 -0.1695 32 1 3.8542 0.9223 -1.0420 33 1 3.8452 -0.3033 1.0988 34 1 5.2623 0.7711 1.0157 35 1 4.1373 0.9262 3.2275 36 1 4.0586 2.4729 2.3504 37 1 0.7015 1.8180 3.7989 38 1 2.2705 1.4232 4.5410 39 1 1.8509 3.8227 4.7850 40 1 3.1873 3.5796 3.6346 41 1 1.3512 5.9821 3.7494 42 1 2.6879 5.7396 2.5993 43 1 0.2144 9.0781 0.3976 44 1 0.5586 2.1115 1.4142 45 1 1.9954 3.1562 1.3049 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339099701.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:23 Heat of formation + Delta-G solvation = -103.900260 kcal Electronic energy + Delta-G solvation = -23058.177551 eV Core-core repulsion = 19882.345460 eV Total energy + Delta-G solvation = -3175.832090 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.90710 -37.45108 -36.14977 -34.18846 -32.73879 -32.27023 -29.48363 -28.99235 -27.42522 -25.54867 -23.92234 -23.36691 -21.92489 -21.81289 -20.37876 -17.89295 -17.03555 -16.90966 -15.99165 -15.69465 -15.33595 -14.92796 -14.59172 -14.41261 -14.18525 -13.91494 -13.48686 -13.08906 -12.73747 -12.69031 -12.47871 -12.31979 -11.89644 -11.70884 -11.64361 -11.55235 -11.22180 -11.08554 -10.89262 -10.81593 -10.66110 -10.46489 -10.10194 -9.93208 -9.82870 -9.79516 -9.53255 -9.25870 -8.89861 -8.54607 -7.76300 -6.18647 -4.17885 3.18723 3.26462 3.27454 4.08137 4.29136 4.50435 4.77519 4.95102 5.07569 5.12777 5.13094 5.34221 5.45803 5.47140 5.54488 5.63676 5.69055 5.75165 5.79986 5.83214 5.87578 5.92962 5.99301 6.02831 6.07570 6.18451 6.21368 6.27957 6.35222 6.37561 6.47397 6.52180 6.53619 6.73487 6.74502 6.89429 6.95432 7.41324 7.43931 7.53086 7.86732 7.91365 8.57128 8.91314 9.40902 10.94077 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.017951 B = 0.006058 C = 0.005233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.439714 B = 4620.831427 C = 5349.428509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.097 4.097 3 C -0.051 4.051 4 C 0.084 3.916 5 O -0.573 6.573 6 C -0.107 4.107 7 C -0.115 4.115 8 C 0.050 3.950 9 N -0.528 5.528 10 C 0.060 3.940 11 C 0.018 3.982 12 O -0.371 6.371 13 C 0.165 3.835 14 C -0.518 4.518 15 H 0.082 0.918 16 C 0.074 3.926 17 N -0.894 5.894 18 Si 0.874 3.126 19 H -0.274 1.274 20 H -0.282 1.282 21 H -0.267 1.267 22 C 0.059 3.941 23 H 0.049 0.951 24 H 0.043 0.957 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.374 0.626 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.035 0.965 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.041 0.959 40 H 0.038 0.962 41 H 0.002 0.998 42 H -0.005 1.005 43 H 0.267 0.733 44 H 0.076 0.924 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.666 -14.492 1.190 15.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.134 4.134 3 C -0.051 4.051 4 C 0.006 3.994 5 O -0.377 6.377 6 C -0.144 4.144 7 C -0.152 4.152 8 C -0.078 4.078 9 N -0.252 5.252 10 C -0.068 4.068 11 C -0.061 4.061 12 O -0.290 6.290 13 C 0.090 3.910 14 C -0.556 4.556 15 H 0.100 0.900 16 C -0.128 4.128 17 N -0.532 5.532 18 Si 0.700 3.300 19 H -0.200 1.200 20 H -0.207 1.207 21 H -0.192 1.192 22 C -0.068 4.068 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.220 0.780 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.053 0.947 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.019 0.981 42 H 0.013 0.987 43 H 0.077 0.923 44 H 0.095 0.905 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.642 -15.297 1.368 16.362 hybrid contribution 0.708 2.279 0.451 2.429 sum 6.350 -13.018 1.818 14.598 Atomic orbital electron populations 1.21818 0.96644 1.00675 1.01560 1.21358 0.95248 0.95391 1.01418 1.20621 0.94986 0.96088 0.93452 1.22202 0.98922 0.94389 0.83924 1.86405 1.80767 1.53974 1.16600 1.21568 0.94609 1.00449 0.97789 1.21591 0.99100 1.00247 0.94310 1.22112 0.88707 0.99035 0.97974 1.62096 1.06253 1.54566 1.02242 1.22247 1.01821 0.90922 0.91825 1.23119 0.95803 0.94343 0.92823 1.88029 1.66966 1.21276 1.52715 1.20602 0.95330 0.77944 0.97102 1.20847 1.26038 0.92752 1.15928 0.89959 1.24754 0.95514 0.97411 0.95147 1.69867 1.40415 1.11485 1.31424 0.86885 0.81282 0.80268 0.81518 1.19983 1.20719 1.19205 1.22365 0.99858 0.97155 0.87411 0.93175 0.93755 0.92442 0.92660 0.91077 0.93243 0.93298 0.78029 0.92426 0.91624 0.91229 0.92208 0.91518 0.94706 0.90021 0.90166 0.94111 0.94368 0.98072 0.98716 0.92339 0.90539 0.90135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.11 37.16 0.34 -1.65 16 2 C -0.10 -1.33 4.19 -26.72 -0.11 -1.44 16 3 C -0.05 -0.76 0.38 -154.43 -0.06 -0.81 16 4 C 0.08 1.27 5.27 37.15 0.20 1.47 16 5 O -0.57 -7.79 12.48 -35.23 -0.44 -8.23 16 6 C -0.11 -1.51 4.66 -26.61 -0.12 -1.63 16 7 C -0.11 -1.43 5.74 -26.65 -0.15 -1.58 16 8 C 0.05 0.67 5.06 -3.84 -0.02 0.65 16 9 N -0.53 -7.69 4.05 -234.67 -0.95 -8.64 16 10 C 0.06 0.85 5.93 -3.82 -0.02 0.83 16 11 C 0.02 0.31 5.75 37.16 0.21 0.52 16 12 O -0.37 -8.05 6.77 -35.23 -0.24 -8.29 16 13 C 0.17 4.07 4.76 36.01 0.17 4.24 16 14 C -0.52 -14.85 9.99 -34.44 -0.34 -15.19 16 15 H 0.08 2.56 8.06 -52.49 -0.42 2.14 16 16 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 17 N -0.89 -26.95 13.96 55.43 0.77 -26.18 16 18 Si 0.87 21.16 27.47 -169.99 -4.67 16.49 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 22 C 0.06 0.98 2.73 -3.83 -0.01 0.97 16 23 H 0.05 0.67 6.78 -51.93 -0.35 0.32 16 24 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.81 6.33 -51.93 -0.33 0.48 16 26 H 0.05 0.78 7.75 -51.93 -0.40 0.38 16 27 H 0.07 0.98 6.14 -51.93 -0.32 0.67 16 28 H 0.05 0.76 6.76 -51.93 -0.35 0.41 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.37 3.62 9.12 45.56 0.42 4.03 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.92 7.89 -51.93 -0.41 0.51 16 33 H 0.07 0.85 6.70 -51.93 -0.35 0.50 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.78 8.06 -51.93 -0.42 0.36 16 36 H 0.03 0.52 6.65 -51.93 -0.35 0.18 16 37 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.08 0.93 8.06 -51.93 -0.42 0.51 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.04 0.64 6.46 -51.93 -0.34 0.30 16 41 H 0.00 0.04 7.20 -51.93 -0.37 -0.34 16 42 H 0.00 -0.12 7.57 -51.93 -0.39 -0.51 16 43 H 0.27 7.48 8.31 -40.82 -0.34 7.15 16 44 H 0.08 1.36 6.42 -51.93 -0.33 1.03 16 45 H 0.08 1.62 5.58 -51.93 -0.29 1.33 16 LS Contribution 333.20 15.07 5.02 5.02 Total: -1.00 -30.42 333.20 -7.65 -38.08 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -7.13 Total: 3.36 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: -0.02 Total: -11.61 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: -0.18 Total: -34.82 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -0.68 Total: -16.52 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.67 Total: 16.49 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.42 -7.65 -38.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339099701.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.824 kcal (2) G-P(sol) polarization free energy of solvation -30.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds