Wall clock time and date at job start Mon Mar 30 2020 05:25:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.53007 * 109.46774 * 2 1
4 4 C 1.52993 * 109.53496 * 305.28362 * 3 2 1
5 5 O 1.42897 * 109.47289 * 304.65352 * 4 3 2
6 6 C 1.53117 * 109.50057 * 185.18358 * 3 2 1
7 7 C 1.53119 * 109.15889 * 297.71223 * 6 3 2
8 8 C 1.53037 * 109.28168 * 302.34903 * 7 6 3
9 9 N 1.46844 * 109.52395 * 59.18138 * 8 7 6
10 10 C 1.46900 * 110.99907 * 174.16550 * 9 8 7
11 11 C 1.52998 * 109.47342 * 66.04074 * 10 9 8
12 12 O 1.42901 * 109.47105 * 65.00198 * 11 10 9
13 13 C 1.42893 * 114.00125 * 179.97438 * 12 11 10
14 14 C 1.50699 * 109.47240 * 179.97438 * 13 12 11
15 15 H 1.08002 * 120.00113 * 0.02562 * 14 13 12
16 16 C 1.37881 * 120.00059 * 179.97438 * 14 13 12
17 17 N 1.31514 * 119.99746 * 180.02562 * 16 14 13
18 18 Si 1.86798 * 120.00098 * 0.02562 * 16 14 13
19 19 H 1.48504 * 109.46902 * 89.99470 * 18 16 14
20 20 H 1.48501 * 109.47256 * 209.99872 * 18 16 14
21 21 H 1.48504 * 109.46847 * 330.00023 * 18 16 14
22 22 C 1.46854 * 111.19436 * 298.25929 * 9 8 7
23 23 H 1.08996 * 109.47003 * 65.34291 * 1 2 3
24 24 H 1.09000 * 109.46621 * 185.33668 * 1 2 3
25 25 H 1.08999 * 109.47178 * 305.34143 * 1 2 3
26 26 H 1.08992 * 109.47140 * 240.00353 * 2 1 3
27 27 H 1.09002 * 109.47120 * 119.99782 * 2 1 3
28 28 H 1.09003 * 109.47633 * 64.65802 * 4 3 2
29 29 H 1.08999 * 109.47070 * 184.65655 * 4 3 2
30 30 H 0.96699 * 114.00347 * 180.02562 * 5 4 3
31 31 H 1.08997 * 109.52154 * 177.81440 * 6 3 2
32 32 H 1.08993 * 109.52325 * 57.61659 * 6 3 2
33 33 H 1.09002 * 109.50508 * 62.29065 * 7 6 3
34 34 H 1.09000 * 109.50346 * 182.36736 * 7 6 3
35 35 H 1.09003 * 109.46413 * 179.19667 * 8 7 6
36 36 H 1.08998 * 109.45720 * 299.16168 * 8 7 6
37 37 H 1.09005 * 109.46890 * 186.04564 * 10 9 8
38 38 H 1.08997 * 109.46974 * 306.03809 * 10 9 8
39 39 H 1.09004 * 109.47053 * 184.99926 * 11 10 9
40 40 H 1.08998 * 109.47242 * 305.00094 * 11 10 9
41 41 H 1.09002 * 109.47371 * 299.99805 * 13 12 11
42 42 H 1.09000 * 109.47221 * 60.00133 * 13 12 11
43 43 H 0.97003 * 120.00086 * 180.02562 * 17 16 14
44 44 H 1.09001 * 109.45905 * 181.76413 * 22 9 8
45 45 H 1.09004 * 109.45933 * 301.73544 * 22 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 1.4253 2.2025 -1.1770
5 8 1.7067 1.5062 -2.3927
6 6 3.5656 1.4454 -0.1304
7 6 4.1749 0.7355 1.0818
8 6 3.7167 1.4380 2.3618
9 7 2.2506 1.4078 2.4403
10 6 1.7808 1.9502 3.7221
11 6 2.1190 3.4403 3.8001
12 8 1.3856 4.1482 2.7985
13 6 1.6298 5.5560 2.7855
14 6 0.8098 6.1981 1.6963
15 1 0.1662 5.5917 1.0762
16 6 0.8804 7.5598 1.4919
17 7 0.1645 8.1201 0.5416
18 14 1.9930 8.6088 2.5648
19 1 3.3395 8.6964 1.9447
20 1 1.4168 9.9716 2.6918
21 1 2.1072 7.9922 3.9110
22 6 1.6436 2.1245 1.3114
23 1 -0.3633 0.4287 -0.9339
24 1 -0.3632 -1.0232 0.0956
25 1 -0.3633 0.5944 0.8383
26 1 1.8934 -0.5137 -0.8899
27 1 1.8934 -0.5138 0.8900
28 1 0.3462 2.2732 -1.0402
29 1 1.8517 3.2044 -1.2251
30 1 1.3465 1.9323 -3.1825
31 1 3.9259 2.4734 -0.1695
32 1 3.8542 0.9223 -1.0420
33 1 3.8452 -0.3033 1.0988
34 1 5.2623 0.7711 1.0157
35 1 4.1373 0.9262 3.2275
36 1 4.0586 2.4729 2.3504
37 1 0.7015 1.8180 3.7989
38 1 2.2705 1.4232 4.5410
39 1 1.8509 3.8227 4.7850
40 1 3.1873 3.5796 3.6346
41 1 1.3512 5.9821 3.7494
42 1 2.6879 5.7396 2.5993
43 1 0.2144 9.0781 0.3976
44 1 0.5586 2.1115 1.4142
45 1 1.9954 3.1562 1.3049
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000339099701.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:25:23
Heat of formation + Delta-G solvation = -103.900260 kcal
Electronic energy + Delta-G solvation = -23058.177551 eV
Core-core repulsion = 19882.345460 eV
Total energy + Delta-G solvation = -3175.832090 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 271.193 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-39.90710 -37.45108 -36.14977 -34.18846 -32.73879 -32.27023 -29.48363 -28.99235
-27.42522 -25.54867 -23.92234 -23.36691 -21.92489 -21.81289 -20.37876 -17.89295
-17.03555 -16.90966 -15.99165 -15.69465 -15.33595 -14.92796 -14.59172 -14.41261
-14.18525 -13.91494 -13.48686 -13.08906 -12.73747 -12.69031 -12.47871 -12.31979
-11.89644 -11.70884 -11.64361 -11.55235 -11.22180 -11.08554 -10.89262 -10.81593
-10.66110 -10.46489 -10.10194 -9.93208 -9.82870 -9.79516 -9.53255 -9.25870
-8.89861 -8.54607 -7.76300 -6.18647 -4.17885 3.18723 3.26462 3.27454
4.08137 4.29136 4.50435 4.77519 4.95102 5.07569 5.12777 5.13094
5.34221 5.45803 5.47140 5.54488 5.63676 5.69055 5.75165 5.79986
5.83214 5.87578 5.92962 5.99301 6.02831 6.07570 6.18451 6.21368
6.27957 6.35222 6.37561 6.47397 6.52180 6.53619 6.73487 6.74502
6.89429 6.95432 7.41324 7.43931 7.53086 7.86732 7.91365 8.57128
8.91314 9.40902 10.94077
Molecular weight = 271.19amu
Principal moments of inertia in cm(-1)
A = 0.017951 B = 0.006058 C = 0.005233
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1559.439714 B = 4620.831427 C = 5349.428509
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.097 4.097
3 C -0.051 4.051
4 C 0.084 3.916
5 O -0.573 6.573
6 C -0.107 4.107
7 C -0.115 4.115
8 C 0.050 3.950
9 N -0.528 5.528
10 C 0.060 3.940
11 C 0.018 3.982
12 O -0.371 6.371
13 C 0.165 3.835
14 C -0.518 4.518
15 H 0.082 0.918
16 C 0.074 3.926
17 N -0.894 5.894
18 Si 0.874 3.126
19 H -0.274 1.274
20 H -0.282 1.282
21 H -0.267 1.267
22 C 0.059 3.941
23 H 0.049 0.951
24 H 0.043 0.957
25 H 0.057 0.943
26 H 0.055 0.945
27 H 0.071 0.929
28 H 0.049 0.951
29 H 0.049 0.951
30 H 0.374 0.626
31 H 0.057 0.943
32 H 0.065 0.935
33 H 0.069 0.931
34 H 0.059 0.941
35 H 0.066 0.934
36 H 0.035 0.965
37 H 0.081 0.919
38 H 0.080 0.920
39 H 0.041 0.959
40 H 0.038 0.962
41 H 0.002 0.998
42 H -0.005 1.005
43 H 0.267 0.733
44 H 0.076 0.924
45 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.666 -14.492 1.190 15.605
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.134 4.134
3 C -0.051 4.051
4 C 0.006 3.994
5 O -0.377 6.377
6 C -0.144 4.144
7 C -0.152 4.152
8 C -0.078 4.078
9 N -0.252 5.252
10 C -0.068 4.068
11 C -0.061 4.061
12 O -0.290 6.290
13 C 0.090 3.910
14 C -0.556 4.556
15 H 0.100 0.900
16 C -0.128 4.128
17 N -0.532 5.532
18 Si 0.700 3.300
19 H -0.200 1.200
20 H -0.207 1.207
21 H -0.192 1.192
22 C -0.068 4.068
23 H 0.068 0.932
24 H 0.062 0.938
25 H 0.076 0.924
26 H 0.073 0.927
27 H 0.089 0.911
28 H 0.068 0.932
29 H 0.067 0.933
30 H 0.220 0.780
31 H 0.076 0.924
32 H 0.084 0.916
33 H 0.088 0.912
34 H 0.078 0.922
35 H 0.085 0.915
36 H 0.053 0.947
37 H 0.100 0.900
38 H 0.098 0.902
39 H 0.059 0.941
40 H 0.056 0.944
41 H 0.019 0.981
42 H 0.013 0.987
43 H 0.077 0.923
44 H 0.095 0.905
45 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges 5.642 -15.297 1.368 16.362
hybrid contribution 0.708 2.279 0.451 2.429
sum 6.350 -13.018 1.818 14.598
Atomic orbital electron populations
1.21818 0.96644 1.00675 1.01560 1.21358 0.95248 0.95391 1.01418
1.20621 0.94986 0.96088 0.93452 1.22202 0.98922 0.94389 0.83924
1.86405 1.80767 1.53974 1.16600 1.21568 0.94609 1.00449 0.97789
1.21591 0.99100 1.00247 0.94310 1.22112 0.88707 0.99035 0.97974
1.62096 1.06253 1.54566 1.02242 1.22247 1.01821 0.90922 0.91825
1.23119 0.95803 0.94343 0.92823 1.88029 1.66966 1.21276 1.52715
1.20602 0.95330 0.77944 0.97102 1.20847 1.26038 0.92752 1.15928
0.89959 1.24754 0.95514 0.97411 0.95147 1.69867 1.40415 1.11485
1.31424 0.86885 0.81282 0.80268 0.81518 1.19983 1.20719 1.19205
1.22365 0.99858 0.97155 0.87411 0.93175 0.93755 0.92442 0.92660
0.91077 0.93243 0.93298 0.78029 0.92426 0.91624 0.91229 0.92208
0.91518 0.94706 0.90021 0.90166 0.94111 0.94368 0.98072 0.98716
0.92339 0.90539 0.90135
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.99 9.11 37.16 0.34 -1.65 16
2 C -0.10 -1.33 4.19 -26.72 -0.11 -1.44 16
3 C -0.05 -0.76 0.38 -154.43 -0.06 -0.81 16
4 C 0.08 1.27 5.27 37.15 0.20 1.47 16
5 O -0.57 -7.79 12.48 -35.23 -0.44 -8.23 16
6 C -0.11 -1.51 4.66 -26.61 -0.12 -1.63 16
7 C -0.11 -1.43 5.74 -26.65 -0.15 -1.58 16
8 C 0.05 0.67 5.06 -3.84 -0.02 0.65 16
9 N -0.53 -7.69 4.05 -234.67 -0.95 -8.64 16
10 C 0.06 0.85 5.93 -3.82 -0.02 0.83 16
11 C 0.02 0.31 5.75 37.16 0.21 0.52 16
12 O -0.37 -8.05 6.77 -35.23 -0.24 -8.29 16
13 C 0.17 4.07 4.76 36.01 0.17 4.24 16
14 C -0.52 -14.85 9.99 -34.44 -0.34 -15.19 16
15 H 0.08 2.56 8.06 -52.49 -0.42 2.14 16
16 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16
17 N -0.89 -26.95 13.96 55.43 0.77 -26.18 16
18 Si 0.87 21.16 27.47 -169.99 -4.67 16.49 16
19 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16
20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
21 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16
22 C 0.06 0.98 2.73 -3.83 -0.01 0.97 16
23 H 0.05 0.67 6.78 -51.93 -0.35 0.32 16
24 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16
25 H 0.06 0.81 6.33 -51.93 -0.33 0.48 16
26 H 0.05 0.78 7.75 -51.93 -0.40 0.38 16
27 H 0.07 0.98 6.14 -51.93 -0.32 0.67 16
28 H 0.05 0.76 6.76 -51.93 -0.35 0.41 16
29 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16
30 H 0.37 3.62 9.12 45.56 0.42 4.03 16
31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16
32 H 0.07 0.92 7.89 -51.93 -0.41 0.51 16
33 H 0.07 0.85 6.70 -51.93 -0.35 0.50 16
34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16
35 H 0.07 0.78 8.06 -51.93 -0.42 0.36 16
36 H 0.03 0.52 6.65 -51.93 -0.35 0.18 16
37 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16
38 H 0.08 0.93 8.06 -51.93 -0.42 0.51 16
39 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16
40 H 0.04 0.64 6.46 -51.93 -0.34 0.30 16
41 H 0.00 0.04 7.20 -51.93 -0.37 -0.34 16
42 H 0.00 -0.12 7.57 -51.93 -0.39 -0.51 16
43 H 0.27 7.48 8.31 -40.82 -0.34 7.15 16
44 H 0.08 1.36 6.42 -51.93 -0.33 1.03 16
45 H 0.08 1.62 5.58 -51.93 -0.29 1.33 16
LS Contribution 333.20 15.07 5.02 5.02
Total: -1.00 -30.42 333.20 -7.65 -38.08
By element:
Atomic # 1 Polarization: 10.49 SS G_CDS: -7.13 Total: 3.36 kcal
Atomic # 6 Polarization: -11.59 SS G_CDS: -0.02 Total: -11.61 kcal
Atomic # 7 Polarization: -34.64 SS G_CDS: -0.18 Total: -34.82 kcal
Atomic # 8 Polarization: -15.84 SS G_CDS: -0.68 Total: -16.52 kcal
Atomic # 14 Polarization: 21.16 SS G_CDS: -4.67 Total: 16.49 kcal
Total LS contribution 5.02 Total: 5.02 kcal
Total: -30.42 -7.65 -38.08 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000339099701.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -65.824 kcal
(2) G-P(sol) polarization free energy of solvation -30.422 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.246 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.076 kcal
(6) G-S(sol) free energy of system = (1) + (5) -103.900 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds