Wall clock time and date at job start Mon Mar 30 2020 05:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.46774 * 2 1 4 4 C 1.52993 * 109.53496 * 305.28362 * 3 2 1 5 5 O 1.42897 * 109.47289 * 304.65352 * 4 3 2 6 6 C 1.53117 * 109.50057 * 185.18358 * 3 2 1 7 7 C 1.53119 * 109.15889 * 297.71223 * 6 3 2 8 8 C 1.53037 * 109.28168 * 302.34903 * 7 6 3 9 9 N 1.46844 * 109.52395 * 59.18138 * 8 7 6 10 10 C 1.46900 * 110.99907 * 174.16550 * 9 8 7 11 11 C 1.52998 * 109.47342 * 66.04074 * 10 9 8 12 12 O 1.42901 * 109.47105 * 65.00198 * 11 10 9 13 13 C 1.42893 * 114.00125 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.47240 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00113 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00059 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99746 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00098 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.46902 * 89.99470 * 18 16 14 20 20 H 1.48501 * 109.47256 * 209.99872 * 18 16 14 21 21 H 1.48504 * 109.46847 * 330.00023 * 18 16 14 22 22 C 1.46854 * 111.19436 * 298.25929 * 9 8 7 23 23 H 1.08996 * 109.47003 * 65.34291 * 1 2 3 24 24 H 1.09000 * 109.46621 * 185.33668 * 1 2 3 25 25 H 1.08999 * 109.47178 * 305.34143 * 1 2 3 26 26 H 1.08992 * 109.47140 * 240.00353 * 2 1 3 27 27 H 1.09002 * 109.47120 * 119.99782 * 2 1 3 28 28 H 1.09003 * 109.47633 * 64.65802 * 4 3 2 29 29 H 1.08999 * 109.47070 * 184.65655 * 4 3 2 30 30 H 0.96699 * 114.00347 * 180.02562 * 5 4 3 31 31 H 1.08997 * 109.52154 * 177.81440 * 6 3 2 32 32 H 1.08993 * 109.52325 * 57.61659 * 6 3 2 33 33 H 1.09002 * 109.50508 * 62.29065 * 7 6 3 34 34 H 1.09000 * 109.50346 * 182.36736 * 7 6 3 35 35 H 1.09003 * 109.46413 * 179.19667 * 8 7 6 36 36 H 1.08998 * 109.45720 * 299.16168 * 8 7 6 37 37 H 1.09005 * 109.46890 * 186.04564 * 10 9 8 38 38 H 1.08997 * 109.46974 * 306.03809 * 10 9 8 39 39 H 1.09004 * 109.47053 * 184.99926 * 11 10 9 40 40 H 1.08998 * 109.47242 * 305.00094 * 11 10 9 41 41 H 1.09002 * 109.47371 * 299.99805 * 13 12 11 42 42 H 1.09000 * 109.47221 * 60.00133 * 13 12 11 43 43 H 0.97003 * 120.00086 * 180.02562 * 17 16 14 44 44 H 1.09001 * 109.45905 * 181.76413 * 22 9 8 45 45 H 1.09004 * 109.45933 * 301.73544 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.4253 2.2025 -1.1770 5 8 1.7067 1.5062 -2.3927 6 6 3.5656 1.4454 -0.1304 7 6 4.1749 0.7355 1.0818 8 6 3.7167 1.4380 2.3618 9 7 2.2506 1.4078 2.4403 10 6 1.7808 1.9502 3.7221 11 6 2.1190 3.4403 3.8001 12 8 1.3856 4.1482 2.7985 13 6 1.6298 5.5560 2.7855 14 6 0.8098 6.1981 1.6963 15 1 0.1662 5.5917 1.0762 16 6 0.8804 7.5598 1.4919 17 7 0.1645 8.1201 0.5416 18 14 1.9930 8.6088 2.5648 19 1 3.3395 8.6964 1.9447 20 1 1.4168 9.9716 2.6918 21 1 2.1072 7.9922 3.9110 22 6 1.6436 2.1245 1.3114 23 1 -0.3633 0.4287 -0.9339 24 1 -0.3632 -1.0232 0.0956 25 1 -0.3633 0.5944 0.8383 26 1 1.8934 -0.5137 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 0.3462 2.2732 -1.0402 29 1 1.8517 3.2044 -1.2251 30 1 1.3465 1.9323 -3.1825 31 1 3.9259 2.4734 -0.1695 32 1 3.8542 0.9223 -1.0420 33 1 3.8452 -0.3033 1.0988 34 1 5.2623 0.7711 1.0157 35 1 4.1373 0.9262 3.2275 36 1 4.0586 2.4729 2.3504 37 1 0.7015 1.8180 3.7989 38 1 2.2705 1.4232 4.5410 39 1 1.8509 3.8227 4.7850 40 1 3.1873 3.5796 3.6346 41 1 1.3512 5.9821 3.7494 42 1 2.6879 5.7396 2.5993 43 1 0.2144 9.0781 0.3976 44 1 0.5586 2.1115 1.4142 45 1 1.9954 3.1562 1.3049 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339099701.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:22 Heat of formation + Delta-G solvation = -126.097338 kcal Electronic energy + Delta-G solvation = -23059.140088 eV Core-core repulsion = 19882.345460 eV Total energy + Delta-G solvation = -3176.794628 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.12581 -38.91647 -37.48536 -35.48505 -34.76773 -33.48179 -30.69564 -30.63182 -29.10443 -26.75872 -25.26123 -24.52862 -23.94278 -22.98161 -21.57573 -19.26317 -18.91018 -18.22467 -17.41905 -17.29063 -16.72605 -16.37440 -16.04090 -15.68405 -15.59354 -15.11298 -14.92797 -14.71286 -14.40950 -13.89734 -13.77605 -13.47900 -13.36201 -13.19323 -12.97550 -12.82863 -12.68283 -12.58997 -12.47467 -12.15692 -11.94135 -11.84970 -11.60127 -11.41172 -11.24905 -11.01765 -11.00203 -10.91317 -10.74583 -10.29876 -9.04632 -8.40349 -6.47264 1.28288 1.30215 1.40835 2.24513 2.86482 2.92276 3.08664 3.58250 3.78091 3.91217 3.98155 4.17954 4.18352 4.32033 4.35555 4.45823 4.48992 4.53403 4.57384 4.58511 4.63152 4.66787 4.72768 4.82830 4.92508 4.92743 4.96235 5.00436 5.08345 5.15399 5.19039 5.23686 5.32699 5.33015 5.40940 5.52431 5.60215 5.69703 5.89559 6.16971 6.27697 6.56081 6.69355 6.86369 7.16850 8.76181 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.017951 B = 0.006058 C = 0.005233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.439714 B = 4620.831427 C = 5349.428509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.051 4.051 4 C 0.090 3.910 5 O -0.573 6.573 6 C -0.104 4.104 7 C -0.109 4.109 8 C 0.048 3.952 9 N -0.522 5.522 10 C 0.064 3.936 11 C 0.011 3.989 12 O -0.387 6.387 13 C 0.178 3.822 14 C -0.537 4.537 15 H 0.034 0.966 16 C 0.017 3.983 17 N -0.939 5.939 18 Si 0.948 3.052 19 H -0.263 1.263 20 H -0.273 1.273 21 H -0.249 1.249 22 C 0.073 3.927 23 H 0.043 0.957 24 H 0.061 0.939 25 H 0.044 0.956 26 H 0.056 0.944 27 H 0.077 0.923 28 H 0.041 0.959 29 H 0.022 0.978 30 H 0.391 0.609 31 H 0.036 0.964 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.016 0.984 37 H 0.076 0.924 38 H 0.119 0.881 39 H 0.054 0.946 40 H 0.044 0.956 41 H 0.007 0.993 42 H 0.001 0.999 43 H 0.272 0.728 44 H 0.055 0.945 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.579 -15.830 2.986 17.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.052 4.052 4 C 0.011 3.989 5 O -0.380 6.380 6 C -0.142 4.142 7 C -0.146 4.146 8 C -0.080 4.080 9 N -0.245 5.245 10 C -0.064 4.064 11 C -0.068 4.068 12 O -0.307 6.307 13 C 0.102 3.898 14 C -0.575 4.575 15 H 0.052 0.948 16 C -0.182 4.182 17 N -0.578 5.578 18 Si 0.770 3.230 19 H -0.187 1.187 20 H -0.198 1.198 21 H -0.173 1.173 22 C -0.055 4.055 23 H 0.063 0.937 24 H 0.080 0.920 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.095 0.905 28 H 0.059 0.941 29 H 0.040 0.960 30 H 0.240 0.760 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.114 0.886 36 H 0.035 0.965 37 H 0.094 0.906 38 H 0.137 0.863 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.025 0.975 42 H 0.018 0.982 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.554 -16.660 3.158 18.563 hybrid contribution 0.044 2.625 -0.194 2.633 sum 7.598 -14.034 2.963 16.232 Atomic orbital electron populations 1.21784 0.96500 1.01430 1.00714 1.21260 0.95282 0.94063 1.01662 1.20614 0.95747 0.96695 0.92126 1.22037 0.98207 0.93451 0.85193 1.86360 1.80942 1.53896 1.16787 1.21535 0.93890 0.99593 0.99166 1.21584 1.00190 1.00195 0.92662 1.22229 0.87564 0.98488 0.99689 1.62135 1.07212 1.53522 1.01661 1.22373 1.02068 0.89263 0.92745 1.23445 0.95690 0.95556 0.92077 1.88047 1.68072 1.19818 1.54761 1.20261 0.94474 0.79618 0.95437 1.21085 1.26304 0.93189 1.16899 0.94754 1.25744 0.97090 0.98761 0.96586 1.70017 1.42215 1.12230 1.33358 0.85716 0.79079 0.78204 0.80021 1.18729 1.19751 1.17265 1.22075 0.98588 0.95454 0.89420 0.93747 0.91999 0.93738 0.92480 0.90484 0.94106 0.95956 0.76047 0.94498 0.91276 0.90155 0.90226 0.88641 0.96544 0.90595 0.86316 0.92825 0.93794 0.97545 0.98151 0.91874 0.92605 0.94095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.84 9.11 71.98 0.66 -3.18 16 2 C -0.09 -2.24 4.19 30.60 0.13 -2.12 16 3 C -0.05 -1.54 0.38 -52.13 -0.02 -1.56 16 4 C 0.09 2.88 5.27 71.98 0.38 3.26 16 5 O -0.57 -15.65 12.48 -148.98 -1.86 -17.51 16 6 C -0.10 -2.90 4.66 30.67 0.14 -2.76 16 7 C -0.11 -2.44 5.74 30.65 0.18 -2.27 16 8 C 0.05 1.17 5.06 86.33 0.44 1.60 16 9 N -0.52 -14.47 4.05 -896.35 -3.63 -18.10 16 10 C 0.06 1.68 5.93 86.30 0.51 2.19 16 11 C 0.01 0.34 5.75 71.98 0.41 0.76 16 12 O -0.39 -17.18 6.77 -148.98 -1.01 -18.19 16 13 C 0.18 8.83 4.76 71.24 0.34 9.17 16 14 C -0.54 -32.12 9.99 25.60 0.26 -31.86 16 15 H 0.03 2.30 8.06 -2.91 -0.02 2.28 16 16 C 0.02 0.97 5.47 84.66 0.46 1.43 16 17 N -0.94 -58.45 13.96 21.45 0.30 -58.15 16 18 Si 0.95 43.41 27.47 68.60 1.88 45.30 16 19 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 21 H -0.25 -10.61 6.54 99.48 0.65 -9.96 16 22 C 0.07 2.47 2.73 86.32 0.24 2.71 16 23 H 0.04 1.19 6.78 -2.39 -0.02 1.17 16 24 H 0.06 1.38 8.14 -2.39 -0.02 1.37 16 25 H 0.04 1.27 6.33 -2.39 -0.02 1.25 16 26 H 0.06 1.50 7.75 -2.39 -0.02 1.48 16 27 H 0.08 1.95 6.14 -2.39 -0.01 1.94 16 28 H 0.04 1.36 6.76 -2.39 -0.02 1.34 16 29 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.39 7.58 9.12 -74.06 -0.68 6.91 16 31 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.07 1.87 7.89 -2.39 -0.02 1.85 16 33 H 0.08 1.68 6.70 -2.39 -0.02 1.66 16 34 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.10 1.82 8.06 -2.39 -0.02 1.80 16 36 H 0.02 0.47 6.65 -2.39 -0.02 0.45 16 37 H 0.08 2.10 8.14 -2.38 -0.02 2.09 16 38 H 0.12 2.27 8.06 -2.39 -0.02 2.25 16 39 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.04 1.39 6.46 -2.39 -0.02 1.37 16 41 H 0.01 0.33 7.20 -2.39 -0.02 0.31 16 42 H 0.00 0.04 7.57 -2.39 -0.02 0.02 16 43 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 44 H 0.06 2.10 6.42 -2.39 -0.02 2.09 16 45 H 0.04 1.75 5.58 -2.38 -0.01 1.73 16 Total: -1.00 -68.15 333.20 0.03 -68.12 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 0.23 Total: 21.17 kcal Atomic # 6 Polarization: -26.75 SS G_CDS: 4.12 Total: -22.63 kcal Atomic # 7 Polarization: -72.91 SS G_CDS: -3.33 Total: -76.25 kcal Atomic # 8 Polarization: -32.84 SS G_CDS: -2.87 Total: -35.70 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.88 Total: 45.30 kcal Total: -68.15 0.03 -68.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339099701.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.975 kcal (2) G-P(sol) polarization free energy of solvation -68.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds