Wall clock time and date at job start Mon Mar 30 2020 05:25:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.53007 * 109.46774 * 2 1
4 4 C 1.52993 * 109.53496 * 305.28362 * 3 2 1
5 5 O 1.42897 * 109.47289 * 304.65352 * 4 3 2
6 6 C 1.53117 * 109.50057 * 185.18358 * 3 2 1
7 7 C 1.53119 * 109.15889 * 297.71223 * 6 3 2
8 8 C 1.53037 * 109.28168 * 302.34903 * 7 6 3
9 9 N 1.46844 * 109.52395 * 59.18138 * 8 7 6
10 10 C 1.46900 * 110.99907 * 174.16550 * 9 8 7
11 11 C 1.52998 * 109.47342 * 66.04074 * 10 9 8
12 12 O 1.42901 * 109.47105 * 65.00198 * 11 10 9
13 13 C 1.42893 * 114.00125 * 179.97438 * 12 11 10
14 14 C 1.50699 * 109.47240 * 179.97438 * 13 12 11
15 15 H 1.08002 * 120.00113 * 0.02562 * 14 13 12
16 16 C 1.37881 * 120.00059 * 179.97438 * 14 13 12
17 17 N 1.31514 * 119.99746 * 180.02562 * 16 14 13
18 18 Si 1.86798 * 120.00098 * 0.02562 * 16 14 13
19 19 H 1.48504 * 109.46902 * 89.99470 * 18 16 14
20 20 H 1.48501 * 109.47256 * 209.99872 * 18 16 14
21 21 H 1.48504 * 109.46847 * 330.00023 * 18 16 14
22 22 C 1.46854 * 111.19436 * 298.25929 * 9 8 7
23 23 H 1.08996 * 109.47003 * 65.34291 * 1 2 3
24 24 H 1.09000 * 109.46621 * 185.33668 * 1 2 3
25 25 H 1.08999 * 109.47178 * 305.34143 * 1 2 3
26 26 H 1.08992 * 109.47140 * 240.00353 * 2 1 3
27 27 H 1.09002 * 109.47120 * 119.99782 * 2 1 3
28 28 H 1.09003 * 109.47633 * 64.65802 * 4 3 2
29 29 H 1.08999 * 109.47070 * 184.65655 * 4 3 2
30 30 H 0.96699 * 114.00347 * 180.02562 * 5 4 3
31 31 H 1.08997 * 109.52154 * 177.81440 * 6 3 2
32 32 H 1.08993 * 109.52325 * 57.61659 * 6 3 2
33 33 H 1.09002 * 109.50508 * 62.29065 * 7 6 3
34 34 H 1.09000 * 109.50346 * 182.36736 * 7 6 3
35 35 H 1.09003 * 109.46413 * 179.19667 * 8 7 6
36 36 H 1.08998 * 109.45720 * 299.16168 * 8 7 6
37 37 H 1.09005 * 109.46890 * 186.04564 * 10 9 8
38 38 H 1.08997 * 109.46974 * 306.03809 * 10 9 8
39 39 H 1.09004 * 109.47053 * 184.99926 * 11 10 9
40 40 H 1.08998 * 109.47242 * 305.00094 * 11 10 9
41 41 H 1.09002 * 109.47371 * 299.99805 * 13 12 11
42 42 H 1.09000 * 109.47221 * 60.00133 * 13 12 11
43 43 H 0.97003 * 120.00086 * 180.02562 * 17 16 14
44 44 H 1.09001 * 109.45905 * 181.76413 * 22 9 8
45 45 H 1.09004 * 109.45933 * 301.73544 * 22 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 1.4253 2.2025 -1.1770
5 8 1.7067 1.5062 -2.3927
6 6 3.5656 1.4454 -0.1304
7 6 4.1749 0.7355 1.0818
8 6 3.7167 1.4380 2.3618
9 7 2.2506 1.4078 2.4403
10 6 1.7808 1.9502 3.7221
11 6 2.1190 3.4403 3.8001
12 8 1.3856 4.1482 2.7985
13 6 1.6298 5.5560 2.7855
14 6 0.8098 6.1981 1.6963
15 1 0.1662 5.5917 1.0762
16 6 0.8804 7.5598 1.4919
17 7 0.1645 8.1201 0.5416
18 14 1.9930 8.6088 2.5648
19 1 3.3395 8.6964 1.9447
20 1 1.4168 9.9716 2.6918
21 1 2.1072 7.9922 3.9110
22 6 1.6436 2.1245 1.3114
23 1 -0.3633 0.4287 -0.9339
24 1 -0.3632 -1.0232 0.0956
25 1 -0.3633 0.5944 0.8383
26 1 1.8934 -0.5137 -0.8899
27 1 1.8934 -0.5138 0.8900
28 1 0.3462 2.2732 -1.0402
29 1 1.8517 3.2044 -1.2251
30 1 1.3465 1.9323 -3.1825
31 1 3.9259 2.4734 -0.1695
32 1 3.8542 0.9223 -1.0420
33 1 3.8452 -0.3033 1.0988
34 1 5.2623 0.7711 1.0157
35 1 4.1373 0.9262 3.2275
36 1 4.0586 2.4729 2.3504
37 1 0.7015 1.8180 3.7989
38 1 2.2705 1.4232 4.5410
39 1 1.8509 3.8227 4.7850
40 1 3.1873 3.5796 3.6346
41 1 1.3512 5.9821 3.7494
42 1 2.6879 5.7396 2.5993
43 1 0.2144 9.0781 0.3976
44 1 0.5586 2.1115 1.4142
45 1 1.9954 3.1562 1.3049
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000339099701.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:25:22
Heat of formation + Delta-G solvation = -126.097338 kcal
Electronic energy + Delta-G solvation = -23059.140088 eV
Core-core repulsion = 19882.345460 eV
Total energy + Delta-G solvation = -3176.794628 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 271.193 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-41.12581 -38.91647 -37.48536 -35.48505 -34.76773 -33.48179 -30.69564 -30.63182
-29.10443 -26.75872 -25.26123 -24.52862 -23.94278 -22.98161 -21.57573 -19.26317
-18.91018 -18.22467 -17.41905 -17.29063 -16.72605 -16.37440 -16.04090 -15.68405
-15.59354 -15.11298 -14.92797 -14.71286 -14.40950 -13.89734 -13.77605 -13.47900
-13.36201 -13.19323 -12.97550 -12.82863 -12.68283 -12.58997 -12.47467 -12.15692
-11.94135 -11.84970 -11.60127 -11.41172 -11.24905 -11.01765 -11.00203 -10.91317
-10.74583 -10.29876 -9.04632 -8.40349 -6.47264 1.28288 1.30215 1.40835
2.24513 2.86482 2.92276 3.08664 3.58250 3.78091 3.91217 3.98155
4.17954 4.18352 4.32033 4.35555 4.45823 4.48992 4.53403 4.57384
4.58511 4.63152 4.66787 4.72768 4.82830 4.92508 4.92743 4.96235
5.00436 5.08345 5.15399 5.19039 5.23686 5.32699 5.33015 5.40940
5.52431 5.60215 5.69703 5.89559 6.16971 6.27697 6.56081 6.69355
6.86369 7.16850 8.76181
Molecular weight = 271.19amu
Principal moments of inertia in cm(-1)
A = 0.017951 B = 0.006058 C = 0.005233
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1559.439714 B = 4620.831427 C = 5349.428509
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.085 4.085
3 C -0.051 4.051
4 C 0.090 3.910
5 O -0.573 6.573
6 C -0.104 4.104
7 C -0.109 4.109
8 C 0.048 3.952
9 N -0.522 5.522
10 C 0.064 3.936
11 C 0.011 3.989
12 O -0.387 6.387
13 C 0.178 3.822
14 C -0.537 4.537
15 H 0.034 0.966
16 C 0.017 3.983
17 N -0.939 5.939
18 Si 0.948 3.052
19 H -0.263 1.263
20 H -0.273 1.273
21 H -0.249 1.249
22 C 0.073 3.927
23 H 0.043 0.957
24 H 0.061 0.939
25 H 0.044 0.956
26 H 0.056 0.944
27 H 0.077 0.923
28 H 0.041 0.959
29 H 0.022 0.978
30 H 0.391 0.609
31 H 0.036 0.964
32 H 0.069 0.931
33 H 0.080 0.920
34 H 0.079 0.921
35 H 0.095 0.905
36 H 0.016 0.984
37 H 0.076 0.924
38 H 0.119 0.881
39 H 0.054 0.946
40 H 0.044 0.956
41 H 0.007 0.993
42 H 0.001 0.999
43 H 0.272 0.728
44 H 0.055 0.945
45 H 0.041 0.959
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.579 -15.830 2.986 17.803
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.123 4.123
3 C -0.052 4.052
4 C 0.011 3.989
5 O -0.380 6.380
6 C -0.142 4.142
7 C -0.146 4.146
8 C -0.080 4.080
9 N -0.245 5.245
10 C -0.064 4.064
11 C -0.068 4.068
12 O -0.307 6.307
13 C 0.102 3.898
14 C -0.575 4.575
15 H 0.052 0.948
16 C -0.182 4.182
17 N -0.578 5.578
18 Si 0.770 3.230
19 H -0.187 1.187
20 H -0.198 1.198
21 H -0.173 1.173
22 C -0.055 4.055
23 H 0.063 0.937
24 H 0.080 0.920
25 H 0.063 0.937
26 H 0.075 0.925
27 H 0.095 0.905
28 H 0.059 0.941
29 H 0.040 0.960
30 H 0.240 0.760
31 H 0.055 0.945
32 H 0.087 0.913
33 H 0.098 0.902
34 H 0.098 0.902
35 H 0.114 0.886
36 H 0.035 0.965
37 H 0.094 0.906
38 H 0.137 0.863
39 H 0.072 0.928
40 H 0.062 0.938
41 H 0.025 0.975
42 H 0.018 0.982
43 H 0.081 0.919
44 H 0.074 0.926
45 H 0.059 0.941
Dipole moment (debyes) X Y Z Total
from point charges 7.554 -16.660 3.158 18.563
hybrid contribution 0.044 2.625 -0.194 2.633
sum 7.598 -14.034 2.963 16.232
Atomic orbital electron populations
1.21784 0.96500 1.01430 1.00714 1.21260 0.95282 0.94063 1.01662
1.20614 0.95747 0.96695 0.92126 1.22037 0.98207 0.93451 0.85193
1.86360 1.80942 1.53896 1.16787 1.21535 0.93890 0.99593 0.99166
1.21584 1.00190 1.00195 0.92662 1.22229 0.87564 0.98488 0.99689
1.62135 1.07212 1.53522 1.01661 1.22373 1.02068 0.89263 0.92745
1.23445 0.95690 0.95556 0.92077 1.88047 1.68072 1.19818 1.54761
1.20261 0.94474 0.79618 0.95437 1.21085 1.26304 0.93189 1.16899
0.94754 1.25744 0.97090 0.98761 0.96586 1.70017 1.42215 1.12230
1.33358 0.85716 0.79079 0.78204 0.80021 1.18729 1.19751 1.17265
1.22075 0.98588 0.95454 0.89420 0.93747 0.91999 0.93738 0.92480
0.90484 0.94106 0.95956 0.76047 0.94498 0.91276 0.90155 0.90226
0.88641 0.96544 0.90595 0.86316 0.92825 0.93794 0.97545 0.98151
0.91874 0.92605 0.94095
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.84 9.11 71.98 0.66 -3.18 16
2 C -0.09 -2.24 4.19 30.60 0.13 -2.12 16
3 C -0.05 -1.54 0.38 -52.13 -0.02 -1.56 16
4 C 0.09 2.88 5.27 71.98 0.38 3.26 16
5 O -0.57 -15.65 12.48 -148.98 -1.86 -17.51 16
6 C -0.10 -2.90 4.66 30.67 0.14 -2.76 16
7 C -0.11 -2.44 5.74 30.65 0.18 -2.27 16
8 C 0.05 1.17 5.06 86.33 0.44 1.60 16
9 N -0.52 -14.47 4.05 -896.35 -3.63 -18.10 16
10 C 0.06 1.68 5.93 86.30 0.51 2.19 16
11 C 0.01 0.34 5.75 71.98 0.41 0.76 16
12 O -0.39 -17.18 6.77 -148.98 -1.01 -18.19 16
13 C 0.18 8.83 4.76 71.24 0.34 9.17 16
14 C -0.54 -32.12 9.99 25.60 0.26 -31.86 16
15 H 0.03 2.30 8.06 -2.91 -0.02 2.28 16
16 C 0.02 0.97 5.47 84.66 0.46 1.43 16
17 N -0.94 -58.45 13.96 21.45 0.30 -58.15 16
18 Si 0.95 43.41 27.47 68.60 1.88 45.30 16
19 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16
20 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16
21 H -0.25 -10.61 6.54 99.48 0.65 -9.96 16
22 C 0.07 2.47 2.73 86.32 0.24 2.71 16
23 H 0.04 1.19 6.78 -2.39 -0.02 1.17 16
24 H 0.06 1.38 8.14 -2.39 -0.02 1.37 16
25 H 0.04 1.27 6.33 -2.39 -0.02 1.25 16
26 H 0.06 1.50 7.75 -2.39 -0.02 1.48 16
27 H 0.08 1.95 6.14 -2.39 -0.01 1.94 16
28 H 0.04 1.36 6.76 -2.39 -0.02 1.34 16
29 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16
30 H 0.39 7.58 9.12 -74.06 -0.68 6.91 16
31 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16
32 H 0.07 1.87 7.89 -2.39 -0.02 1.85 16
33 H 0.08 1.68 6.70 -2.39 -0.02 1.66 16
34 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16
35 H 0.10 1.82 8.06 -2.39 -0.02 1.80 16
36 H 0.02 0.47 6.65 -2.39 -0.02 0.45 16
37 H 0.08 2.10 8.14 -2.38 -0.02 2.09 16
38 H 0.12 2.27 8.06 -2.39 -0.02 2.25 16
39 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16
40 H 0.04 1.39 6.46 -2.39 -0.02 1.37 16
41 H 0.01 0.33 7.20 -2.39 -0.02 0.31 16
42 H 0.00 0.04 7.57 -2.39 -0.02 0.02 16
43 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16
44 H 0.06 2.10 6.42 -2.39 -0.02 2.09 16
45 H 0.04 1.75 5.58 -2.38 -0.01 1.73 16
Total: -1.00 -68.15 333.20 0.03 -68.12
By element:
Atomic # 1 Polarization: 20.94 SS G_CDS: 0.23 Total: 21.17 kcal
Atomic # 6 Polarization: -26.75 SS G_CDS: 4.12 Total: -22.63 kcal
Atomic # 7 Polarization: -72.91 SS G_CDS: -3.33 Total: -76.25 kcal
Atomic # 8 Polarization: -32.84 SS G_CDS: -2.87 Total: -35.70 kcal
Atomic # 14 Polarization: 43.41 SS G_CDS: 1.88 Total: 45.30 kcal
Total: -68.15 0.03 -68.12 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000339099701.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -57.975 kcal
(2) G-P(sol) polarization free energy of solvation -68.155 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.130 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.032 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.123 kcal
(6) G-S(sol) free energy of system = (1) + (5) -126.097 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.51 seconds