Wall clock time and date at job start Mon Mar 30 2020 05:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52913 * 1 3 3 C 1.54064 * 108.07098 * 2 1 4 4 C 1.53266 * 109.60859 * 117.36923 * 2 1 3 5 5 N 1.47222 * 108.41063 * 70.90509 * 4 2 1 6 6 C 1.46897 * 110.90898 * 187.49300 * 5 4 2 7 7 C 1.53004 * 109.46766 * 75.82245 * 6 5 4 8 8 O 1.42902 * 109.47049 * 65.01846 * 7 6 5 9 9 C 1.42898 * 113.99603 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.46866 * 180.02562 * 9 8 7 11 11 H 1.07996 * 120.00362 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99902 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00237 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99847 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47114 * 60.00542 * 14 12 10 16 16 H 1.48500 * 109.46872 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47012 * 300.00254 * 14 12 10 18 18 C 1.46952 * 109.32143 * 64.74160 * 5 4 2 19 19 C 1.52882 * 109.92863 * 298.27462 * 18 5 4 20 20 C 1.53199 * 109.44035 * 282.75286 * 19 18 5 21 21 C 1.54290 * 107.81776 * 166.01192 * 19 18 5 22 22 O 1.41491 * 112.20055 * 46.91531 * 19 18 5 23 23 H 1.09005 * 109.46572 * 302.63797 * 1 2 3 24 24 H 1.08992 * 109.47447 * 62.63036 * 1 2 3 25 25 H 1.08999 * 109.47250 * 182.63834 * 1 2 3 26 26 H 1.09001 * 109.47119 * 178.45201 * 3 2 1 27 27 H 1.08999 * 109.47055 * 298.45180 * 3 2 1 28 28 H 1.08996 * 109.47028 * 58.45255 * 3 2 1 29 29 H 1.08880 * 109.55609 * 311.43163 * 4 2 1 30 30 H 1.08769 * 109.68103 * 190.59626 * 4 2 1 31 31 H 1.09004 * 109.47078 * 315.82778 * 6 5 4 32 32 H 1.08995 * 109.47426 * 195.82032 * 6 5 4 33 33 H 1.09002 * 109.47181 * 305.01790 * 7 6 5 34 34 H 1.09001 * 109.46797 * 185.01629 * 7 6 5 35 35 H 1.09004 * 109.47347 * 299.99466 * 9 8 7 36 36 H 1.08998 * 109.47738 * 59.99635 * 9 8 7 37 37 H 0.96997 * 119.99906 * 180.02562 * 13 12 10 38 38 H 1.09176 * 109.34668 * 58.43368 * 18 5 4 39 39 H 1.09079 * 109.44528 * 177.92557 * 18 5 4 40 40 H 1.08994 * 109.47330 * 184.63898 * 20 19 18 41 41 H 1.08999 * 109.46723 * 304.64374 * 20 19 18 42 42 H 1.08997 * 109.46778 * 64.64020 * 20 19 18 43 43 H 1.09000 * 109.47391 * 298.41595 * 21 19 18 44 44 H 1.09005 * 109.47157 * 58.41358 * 21 19 18 45 45 H 1.09000 * 109.47709 * 178.41051 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5291 0.0000 0.0000 3 6 2.0070 1.4646 0.0000 4 6 2.0435 -0.6637 1.2822 5 7 1.7691 -2.1078 1.2005 6 6 2.0777 -2.7729 2.4734 7 6 0.9734 -2.4695 3.4881 8 8 -0.2538 -3.0525 3.0451 9 6 -1.3557 -2.8272 3.9266 10 6 -2.5907 -3.4827 3.3646 11 1 -2.5395 -4.0174 2.4277 12 6 -3.7863 -3.3997 4.0464 13 7 -3.8489 -2.7481 5.1871 14 14 -5.3174 -4.2116 3.3493 15 1 -5.0840 -5.6716 3.2108 16 1 -6.4625 -3.9776 4.2654 17 1 -5.6229 -3.6306 2.0173 18 6 2.5489 -2.6894 0.0990 19 6 2.1298 -2.0555 -1.2276 20 6 0.7979 -2.6600 -1.6833 21 6 3.1936 -2.4226 -2.2831 22 8 2.0550 -0.6449 -1.1460 23 1 -0.3633 0.5543 0.8655 24 1 -0.3634 0.4724 -0.9125 25 1 -0.3634 -1.0266 0.0473 26 1 3.0964 1.4914 0.0278 27 1 1.6543 1.9619 -0.9035 28 1 1.6086 1.9768 0.8758 29 1 1.5262 -0.2432 2.1430 30 1 3.1147 -0.4998 1.3752 31 1 3.0311 -2.4058 2.8533 32 1 2.1398 -3.8496 2.3151 33 1 0.8508 -1.3903 3.5798 34 1 1.2455 -2.8880 4.4571 35 1 -1.1317 -3.2534 4.9046 36 1 -1.5268 -1.7555 4.0280 37 1 -4.6899 -2.6901 5.6669 38 1 3.6110 -2.5042 0.2707 39 1 2.3754 -3.7656 0.0600 40 1 0.5396 -2.2696 -2.6676 41 1 0.8901 -3.7448 -1.7352 42 1 0.0163 -2.3955 -0.9710 43 1 4.1586 -2.0133 -1.9840 44 1 3.2678 -3.5072 -2.3623 45 1 2.9062 -2.0066 -3.2487 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339113715.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:15 Heat of formation + Delta-G solvation = -115.913796 kcal Electronic energy + Delta-G solvation = -22663.875310 eV Core-core repulsion = 19487.522274 eV Total energy + Delta-G solvation = -3176.353036 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.25550 -38.68870 -36.76829 -36.09794 -34.86566 -32.58805 -30.77978 -28.86999 -28.60708 -27.70109 -27.50020 -25.24892 -24.41799 -22.65820 -22.11427 -19.47384 -18.60594 -17.68630 -17.52107 -17.11200 -16.36747 -16.26407 -15.92805 -15.74045 -15.65019 -15.03358 -14.77687 -14.33624 -13.96772 -13.79735 -13.62566 -13.36626 -13.09029 -13.05925 -12.96401 -12.92244 -12.84063 -12.76932 -12.72073 -12.58754 -12.53978 -12.24777 -11.97541 -11.69402 -11.42953 -11.25853 -10.94364 -10.84003 -10.46574 -10.16564 -9.22997 -8.30999 -6.42577 1.38959 1.43699 1.51979 2.34964 2.46588 2.88424 3.02723 3.24226 3.75187 3.85720 3.92627 3.93930 4.06827 4.20228 4.24376 4.32004 4.43723 4.45476 4.58944 4.64408 4.67944 4.73103 4.74143 4.78543 4.80488 4.82946 4.93019 4.94418 4.97147 5.01726 5.01823 5.14091 5.20249 5.24979 5.28684 5.41212 5.56009 5.58566 5.98069 6.03432 6.05939 6.58149 6.74604 6.87665 7.29551 8.81179 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.020724 B = 0.004699 C = 0.004580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.760207 B = 5957.394683 C = 6111.614138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.131 3.869 3 C -0.135 4.135 4 C 0.026 3.974 5 N -0.537 5.537 6 C 0.068 3.932 7 C 0.061 3.939 8 O -0.393 6.393 9 C 0.212 3.788 10 C -0.543 4.543 11 H 0.058 0.942 12 C 0.008 3.992 13 N -0.931 5.931 14 Si 0.979 3.021 15 H -0.265 1.265 16 H -0.274 1.274 17 H -0.267 1.267 18 C 0.029 3.971 19 C 0.126 3.874 20 C -0.166 4.166 21 C -0.134 4.134 22 O -0.384 6.384 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.049 0.951 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.034 0.966 34 H 0.047 0.953 35 H -0.018 1.018 36 H -0.020 1.020 37 H 0.270 0.730 38 H 0.049 0.951 39 H 0.086 0.914 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.044 0.956 43 H 0.063 0.937 44 H 0.085 0.915 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.865 4.150 -11.986 20.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.092 3.908 3 C -0.193 4.193 4 C -0.103 4.103 5 N -0.261 5.261 6 C -0.060 4.060 7 C -0.016 4.016 8 O -0.312 6.312 9 C 0.137 3.863 10 C -0.581 4.581 11 H 0.077 0.923 12 C -0.190 4.190 13 N -0.571 5.571 14 Si 0.802 3.198 15 H -0.190 1.190 16 H -0.199 1.199 17 H -0.192 1.192 18 C -0.099 4.099 19 C 0.087 3.913 20 C -0.223 4.223 21 C -0.192 4.192 22 O -0.304 6.304 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.000 1.000 36 H -0.002 1.002 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.104 0.896 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.063 0.937 43 H 0.082 0.918 44 H 0.103 0.897 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 15.286 4.116 -12.243 20.012 hybrid contribution -0.336 -0.176 0.950 1.023 sum 14.951 3.940 -11.293 19.146 Atomic orbital electron populations 1.22280 0.96083 1.02182 1.01443 1.21407 0.92546 0.92890 0.84004 1.22042 1.02012 0.92081 1.03137 1.22990 0.99340 0.88846 0.99080 1.62481 1.56313 1.02967 1.04370 1.22101 0.95097 1.00016 0.88775 1.22532 0.85959 0.96566 0.96556 1.87896 1.17748 1.76469 1.49093 1.19744 0.84546 0.93605 0.88445 1.21318 0.93960 1.34848 1.07956 0.92330 1.25915 1.02371 0.95749 0.95006 1.70061 1.28065 1.42755 1.16170 0.85294 0.77084 0.79058 0.78349 1.18963 1.19880 1.19236 1.22908 0.95574 1.00325 0.91057 1.21485 0.95714 0.79910 0.94230 1.22411 0.97731 1.01110 1.01066 1.22109 0.97092 1.02303 0.97653 1.86703 1.82761 1.20030 1.40915 0.92466 0.92209 0.93194 0.91350 0.91408 0.90286 0.90630 0.92872 0.90955 0.90044 0.94766 0.93534 0.99991 1.00225 0.92108 0.93295 0.89565 0.92153 0.91178 0.93701 0.91771 0.89650 0.91546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.98 8.32 71.95 0.60 -4.38 16 2 C 0.13 3.45 1.09 -10.37 -0.01 3.44 16 3 C -0.14 -2.77 8.68 72.34 0.63 -2.14 16 4 C 0.03 0.69 4.08 86.33 0.35 1.04 16 5 N -0.54 -16.01 4.30 -895.05 -3.85 -19.86 16 6 C 0.07 1.98 5.36 86.31 0.46 2.44 16 7 C 0.06 2.31 6.13 71.98 0.44 2.75 16 8 O -0.39 -19.65 10.27 -148.98 -1.53 -21.18 16 9 C 0.21 12.21 5.69 71.24 0.41 12.62 16 10 C -0.54 -33.11 9.43 25.60 0.24 -32.87 16 11 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 12 C 0.01 0.47 5.46 84.66 0.46 0.93 16 13 N -0.93 -56.84 13.29 21.45 0.28 -56.55 16 14 Si 0.98 45.24 29.54 68.60 2.03 47.26 16 15 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 16 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 17 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 18 C 0.03 0.72 4.19 86.25 0.36 1.08 16 19 C 0.13 3.05 1.13 -10.33 -0.01 3.04 16 20 C -0.17 -4.40 8.47 72.05 0.61 -3.79 16 21 C -0.13 -2.38 8.59 72.42 0.62 -1.76 16 22 O -0.38 -10.25 9.07 -148.52 -1.35 -11.60 16 23 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 24 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.05 1.84 5.61 -2.39 -0.01 1.82 16 26 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.08 2.17 6.59 -2.45 -0.02 2.16 16 30 H 0.05 1.24 8.02 -2.51 -0.02 1.22 16 31 H 0.07 1.67 8.00 -2.39 -0.02 1.65 16 32 H 0.08 2.36 7.86 -2.39 -0.02 2.34 16 33 H 0.03 1.28 6.69 -2.39 -0.02 1.27 16 34 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 35 H -0.02 -1.06 8.14 -2.39 -0.02 -1.07 16 36 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 37 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 38 H 0.05 1.05 7.98 -2.29 -0.02 1.03 16 39 H 0.09 2.07 7.81 -2.34 -0.02 2.05 16 40 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.07 1.68 8.06 -2.39 -0.02 1.66 16 42 H 0.04 1.49 5.67 -2.39 -0.01 1.47 16 43 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 45 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -68.51 350.51 1.67 -66.84 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 0.92 Total: 12.68 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: 5.16 Total: -17.60 kcal Atomic # 7 Polarization: -72.85 SS G_CDS: -3.56 Total: -76.41 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -2.88 Total: -32.78 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -68.51 1.67 -66.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339113715.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.071 kcal (2) G-P(sol) polarization free energy of solvation -68.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds