Wall clock time and date at job start Mon Mar 30 2020 05:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99832 * 2 1 4 4 H 1.48501 * 109.47287 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47048 * 119.99415 * 3 2 1 6 6 H 1.48496 * 109.47076 * 239.99376 * 3 2 1 7 7 C 1.37874 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00063 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00281 * 0.02562 * 7 2 1 10 10 O 1.42893 * 109.47335 * 179.97438 * 9 7 2 11 11 C 1.42900 * 114.00462 * 175.04113 * 10 9 7 12 12 C 1.52997 * 109.47666 * 184.90753 * 11 10 9 13 13 N 1.46908 * 109.46803 * 70.78014 * 12 11 10 14 14 C 1.47805 * 110.99684 * 291.73130 * 13 12 11 15 15 C 1.45866 * 112.91554 * 153.86614 * 14 13 12 16 16 C 1.54512 * 111.58788 * 61.32792 * 15 14 13 17 17 C 1.50459 * 108.85301 * 282.80614 * 16 15 14 18 18 C 1.54292 * 113.03262 * 92.15647 * 17 16 15 19 19 C 1.44268 * 110.99998 * 169.75347 * 13 12 11 20 20 H 1.08999 * 108.97919 * 98.65900 * 19 13 12 21 21 C 1.53006 * 108.97818 * 339.95189 * 19 13 12 22 22 C 1.52994 * 109.47123 * 177.29096 * 21 19 13 23 23 O 1.42895 * 109.47154 * 185.18816 * 22 21 19 24 24 H 0.97002 * 119.99807 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46874 * 300.00164 * 9 7 2 26 26 H 1.08999 * 109.47071 * 59.99770 * 9 7 2 27 27 H 1.09002 * 109.46974 * 304.91674 * 11 10 9 28 28 H 1.09008 * 109.46716 * 64.90546 * 11 10 9 29 29 H 1.08996 * 109.47177 * 190.77520 * 12 11 10 30 30 H 1.08995 * 109.47250 * 310.78237 * 12 11 10 31 31 H 1.08997 * 108.79714 * 274.75366 * 14 13 12 32 32 H 1.09005 * 108.79217 * 33.10248 * 14 13 12 33 33 H 1.08996 * 109.05782 * 181.87269 * 15 14 13 34 34 H 1.09004 * 109.06083 * 300.85877 * 15 14 13 35 35 H 1.09000 * 109.57032 * 42.61851 * 16 15 14 36 36 H 1.08995 * 109.57010 * 162.86814 * 16 15 14 37 37 H 1.08998 * 108.77038 * 213.07228 * 17 16 15 38 38 H 1.09003 * 108.77334 * 331.35301 * 17 16 15 39 39 H 1.09000 * 108.91762 * 79.02463 * 18 17 16 40 40 H 1.09003 * 108.91850 * 197.67034 * 18 17 16 41 41 H 1.09000 * 109.47088 * 297.29629 * 21 19 13 42 42 H 1.09001 * 109.46820 * 57.29244 * 21 19 13 43 43 H 1.09004 * 109.47553 * 305.18855 * 22 21 19 44 44 H 1.09005 * 109.46702 * 65.18891 * 22 21 19 45 45 H 0.96701 * 114.00390 * 185.00277 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6965 1.2126 6 1 3.1030 1.6964 -1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5689 -4.8723 0.1134 12 6 2.6548 -5.9441 0.2261 13 7 3.3082 -5.8431 1.5380 14 6 4.0969 -4.5975 1.6423 15 6 4.2536 -4.1380 3.0178 16 6 5.0038 -5.1761 3.8820 17 6 4.0549 -6.2876 4.2399 18 6 4.0930 -7.4600 3.2376 19 6 4.1673 -6.9774 1.7764 20 1 5.1955 -6.6977 1.5472 21 6 3.7477 -8.1223 0.8522 22 6 4.6941 -9.3084 1.0476 23 8 4.3779 -10.3311 0.1010 24 1 -0.4850 -0.8401 -0.0004 25 1 0.6241 -2.5567 0.8903 26 1 0.6247 -2.5571 -0.8897 27 1 0.9386 -4.8986 1.0023 28 1 0.9595 -5.0639 -0.7699 29 1 2.2039 -6.9307 0.1198 30 1 3.3946 -5.7960 -0.5606 31 1 5.0847 -4.7704 1.2152 32 1 3.5981 -3.8169 1.0678 33 1 4.8134 -3.2027 3.0190 34 1 3.2680 -3.9631 3.4491 35 1 5.8446 -5.5809 3.3186 36 1 5.3694 -4.6986 4.7910 37 1 4.3129 -6.6639 5.2298 38 1 3.0415 -5.8873 4.2706 39 1 4.9650 -8.0785 3.4503 40 1 3.1935 -8.0624 3.3641 41 1 2.7288 -8.4273 1.0911 42 1 3.7933 -7.7880 -0.1842 43 1 5.7230 -8.9808 0.8984 44 1 4.5808 -9.7010 2.0582 45 1 4.8877 -11.1447 0.2160 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339166252.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:42 Heat of formation + Delta-G solvation = -124.261461 kcal Electronic energy + Delta-G solvation = -22330.984860 eV Core-core repulsion = 19154.269842 eV Total energy + Delta-G solvation = -3176.715018 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.03032 -38.71317 -37.79932 -35.90935 -35.18551 -34.29132 -31.25885 -30.21247 -28.62083 -26.70988 -25.49203 -24.73101 -23.69383 -22.46403 -21.40766 -19.94366 -19.19632 -18.47631 -17.63248 -17.28468 -16.78857 -16.57298 -16.08479 -15.71426 -15.44552 -15.24900 -14.96213 -14.91400 -14.39783 -14.24800 -13.76895 -13.58276 -13.46431 -13.32154 -13.04052 -12.83280 -12.56940 -12.53340 -12.15325 -11.93904 -11.88106 -11.67485 -11.52149 -11.37962 -11.30092 -11.06932 -10.87271 -10.83319 -10.71437 -10.18077 -9.25363 -8.82688 -6.53594 1.51870 1.60750 1.81503 2.48791 2.81854 2.99632 3.04329 3.30694 3.76575 3.87409 4.03129 4.07820 4.13704 4.21968 4.27481 4.32109 4.36115 4.39950 4.46028 4.51699 4.53838 4.59919 4.65181 4.68462 4.79159 4.83334 4.89488 4.94076 5.00500 5.06861 5.18481 5.21669 5.33280 5.37194 5.45884 5.56706 5.58455 5.70708 5.93153 6.10746 6.30585 6.35734 6.64217 6.90794 7.27441 8.58284 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.023956 B = 0.004340 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.542538 B = 6449.525927 C = 7171.477568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.029 4.029 3 Si 1.126 2.874 4 H -0.277 1.277 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.618 4.618 8 H 0.054 0.946 9 C 0.197 3.803 10 O -0.389 6.389 11 C 0.054 3.946 12 C 0.063 3.937 13 N -0.523 5.523 14 C 0.034 3.966 15 C -0.109 4.109 16 C -0.108 4.108 17 C -0.109 4.109 18 C -0.099 4.099 19 C 0.088 3.912 20 H 0.045 0.955 21 C -0.130 4.130 22 C 0.080 3.920 23 O -0.597 6.597 24 H 0.255 0.745 25 H -0.021 1.021 26 H -0.022 1.022 27 H 0.042 0.958 28 H 0.050 0.950 29 H 0.116 0.884 30 H 0.034 0.966 31 H 0.027 0.973 32 H 0.086 0.914 33 H 0.056 0.944 34 H 0.045 0.955 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.044 0.956 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.063 0.937 43 H 0.051 0.949 44 H 0.067 0.933 45 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.736 -19.156 6.567 23.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.226 4.226 3 Si 0.945 3.055 4 H -0.202 1.202 5 H -0.191 1.191 6 H -0.192 1.192 7 C -0.655 4.655 8 H 0.073 0.927 9 C 0.122 3.878 10 O -0.308 6.308 11 C -0.023 4.023 12 C -0.065 4.065 13 N -0.248 5.248 14 C -0.093 4.093 15 C -0.147 4.147 16 C -0.145 4.145 17 C -0.146 4.146 18 C -0.137 4.137 19 C -0.021 4.021 20 H 0.063 0.937 21 C -0.168 4.168 22 C 0.002 3.998 23 O -0.406 6.406 24 H 0.064 0.936 25 H -0.003 1.003 26 H -0.004 1.004 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.133 0.867 30 H 0.053 0.947 31 H 0.045 0.955 32 H 0.104 0.896 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.063 0.937 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.085 0.915 45 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 10.946 -17.061 6.705 21.351 hybrid contribution 0.327 -1.970 -0.599 2.084 sum 11.273 -19.031 6.106 22.946 Atomic orbital electron populations 1.70926 1.07818 1.29792 1.48087 1.27562 0.96433 1.06554 0.92068 0.82847 0.74079 0.70315 0.78265 1.20233 1.19147 1.19244 1.22224 0.95282 0.91899 1.56124 0.92742 1.19929 0.89324 0.86056 0.92509 1.87754 1.34459 1.14479 1.94154 1.22667 0.96248 0.84013 0.99396 1.22393 0.95716 0.98152 0.90200 1.61721 1.31488 1.02232 1.29339 1.21446 0.95563 0.93605 0.98651 1.20514 1.00062 0.98550 0.95553 1.21319 0.97995 0.95905 0.99297 1.21176 0.99311 0.95567 0.98567 1.22021 1.02342 0.97282 0.92038 1.21497 0.94696 0.89633 0.96264 0.93684 1.22028 1.00499 0.94580 0.99712 1.22188 0.97355 0.87952 0.92301 1.86428 1.68298 1.28295 1.57562 0.93593 1.00293 1.00394 0.93966 0.93227 0.86661 0.94733 0.95488 0.89609 0.92508 0.93612 0.91819 0.91264 0.91253 0.93671 0.90107 0.91734 0.90762 0.91880 0.93102 0.91521 0.75204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.19 13.65 21.45 0.29 -57.90 16 2 C -0.03 -1.70 5.46 84.65 0.46 -1.23 16 3 Si 1.13 50.75 29.90 68.60 2.05 52.80 16 4 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 6 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 7 C -0.62 -37.24 9.43 25.60 0.24 -37.00 16 8 H 0.05 3.26 7.81 -2.91 -0.02 3.24 16 9 C 0.20 11.12 5.01 71.24 0.36 11.48 16 10 O -0.39 -18.98 7.15 -148.98 -1.07 -20.05 16 11 C 0.05 2.07 6.14 71.98 0.44 2.51 16 12 C 0.06 1.94 4.17 86.30 0.36 2.30 16 13 N -0.52 -15.66 4.21 -886.10 -3.73 -19.38 16 14 C 0.03 1.16 4.78 83.94 0.40 1.56 16 15 C -0.11 -3.40 5.53 28.92 0.16 -3.24 16 16 C -0.11 -2.49 5.60 30.29 0.17 -2.32 16 17 C -0.11 -2.33 5.42 30.21 0.16 -2.16 16 18 C -0.10 -1.86 4.64 31.39 0.15 -1.71 16 19 C 0.09 2.00 1.89 45.77 0.09 2.09 16 20 H 0.05 1.05 6.51 -2.39 -0.02 1.04 16 21 C -0.13 -2.68 3.59 30.59 0.11 -2.57 16 22 C 0.08 1.25 6.60 71.98 0.47 1.73 16 23 O -0.60 -10.25 13.66 -148.98 -2.03 -12.28 16 24 H 0.25 16.16 7.22 -92.71 -0.67 15.49 16 25 H -0.02 -1.21 7.98 -2.39 -0.02 -1.23 16 26 H -0.02 -1.26 8.01 -2.39 -0.02 -1.28 16 27 H 0.04 1.67 8.12 -2.39 -0.02 1.65 16 28 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 29 H 0.12 2.96 5.53 -2.39 -0.01 2.95 16 30 H 0.03 1.11 7.81 -2.39 -0.02 1.09 16 31 H 0.03 0.88 7.24 -2.39 -0.02 0.86 16 32 H 0.09 3.73 4.32 -4.00 -0.02 3.71 16 33 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.05 1.61 7.58 -2.39 -0.02 1.59 16 35 H 0.06 1.37 7.15 -2.39 -0.02 1.35 16 36 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.04 1.19 7.38 -2.39 -0.02 1.17 16 39 H 0.08 1.13 7.52 -2.39 -0.02 1.11 16 40 H 0.06 1.20 7.95 -2.39 -0.02 1.18 16 41 H 0.07 1.58 7.42 -2.39 -0.02 1.56 16 42 H 0.06 1.47 6.32 -2.39 -0.02 1.45 16 43 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 44 H 0.07 0.80 7.10 -2.38 -0.02 0.79 16 45 H 0.40 2.87 9.12 -74.06 -0.68 2.19 16 Total: -1.00 -70.54 336.99 -0.53 -71.07 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.38 Total: 14.32 kcal Atomic # 6 Polarization: -32.15 SS G_CDS: 3.57 Total: -28.58 kcal Atomic # 7 Polarization: -73.85 SS G_CDS: -3.43 Total: -77.28 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -3.10 Total: -32.33 kcal Atomic # 14 Polarization: 50.75 SS G_CDS: 2.05 Total: 52.80 kcal Total: -70.54 -0.53 -71.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339166252.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.188 kcal (2) G-P(sol) polarization free energy of solvation -70.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds