Wall clock time and date at job start Mon Mar 30 2020 04:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45199 * 109.46887 * 2 1 4 4 C 1.34225 * 116.99951 * 179.97438 * 3 2 1 5 5 O 1.20835 * 119.99874 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00321 * 179.97438 * 4 3 2 7 7 C 1.52998 * 109.47210 * 175.49816 * 6 4 3 8 8 H 1.09003 * 110.33669 * 308.12155 * 7 6 4 9 9 C 1.54906 * 110.37486 * 70.37805 * 7 6 4 10 10 C 1.55263 * 101.59887 * 155.81667 * 9 7 6 11 11 H 1.09001 * 110.75751 * 82.93044 * 10 9 7 12 12 O 1.42898 * 110.74072 * 206.05149 * 10 9 7 13 13 C 1.42907 * 113.99809 * 205.15094 * 12 10 9 14 14 C 1.54317 * 103.08477 * 324.48738 * 10 9 7 15 15 N 1.47442 * 107.23183 * 22.20697 * 14 10 9 16 16 C 1.46907 * 110.99909 * 123.25896 * 15 14 10 17 17 C 1.50700 * 109.47223 * 74.84030 * 16 15 14 18 18 H 1.07997 * 119.99856 * 359.97438 * 17 16 15 19 19 C 1.37871 * 119.99594 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00392 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99677 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47192 * 90.00176 * 21 19 17 23 23 H 1.48509 * 109.47028 * 209.99890 * 21 19 17 24 24 H 1.48495 * 109.47123 * 329.99936 * 21 19 17 25 25 H 1.08994 * 109.47057 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46751 * 60.00291 * 1 2 3 27 27 H 1.08994 * 109.47076 * 300.00209 * 1 2 3 28 28 H 1.08999 * 109.46751 * 119.99709 * 2 1 3 29 29 H 1.08994 * 109.47076 * 239.99790 * 2 1 3 30 30 H 1.08999 * 109.47031 * 295.49805 * 6 4 3 31 31 H 1.08999 * 109.47151 * 55.49641 * 6 4 3 32 32 H 1.08998 * 110.98937 * 273.98677 * 9 7 6 33 33 H 1.08997 * 110.99317 * 37.80608 * 9 7 6 34 34 H 1.09003 * 109.47129 * 179.97438 * 13 12 10 35 35 H 1.08996 * 109.47040 * 300.00473 * 13 12 10 36 36 H 1.09002 * 109.46609 * 60.00223 * 13 12 10 37 37 H 1.08993 * 109.89298 * 262.79619 * 14 10 9 38 38 H 1.09002 * 110.02154 * 141.68427 * 14 10 9 39 39 H 1.09000 * 109.46609 * 194.84060 * 16 15 14 40 40 H 1.08995 * 109.47160 * 314.83564 * 16 15 14 41 41 H 0.97003 * 119.99959 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9207 2.9375 0.0000 7 6 5.4444 2.8591 0.1140 8 1 5.7294 2.2345 0.9606 9 6 6.0554 2.3029 -1.1963 10 6 7.4958 2.8795 -1.1385 11 1 8.1382 2.2530 -0.5196 12 8 8.0399 3.0148 -2.4529 13 6 9.4679 2.9821 -2.4970 14 6 7.2922 4.2636 -0.4871 15 7 6.0202 4.2133 0.2568 16 6 6.2240 4.5523 1.6716 17 6 6.4376 6.0380 1.8065 18 1 6.4238 6.6674 0.9290 19 6 6.6517 6.5935 3.0501 20 7 6.6690 5.8270 4.1186 21 14 6.9172 8.4350 3.2172 22 1 5.6084 9.1078 3.4164 23 1 7.7950 8.7046 4.3843 24 1 7.5592 8.9565 1.9839 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5138 0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.6512 3.4417 -0.9280 31 1 3.5213 3.4962 0.8463 32 1 6.0687 1.2130 -1.1890 33 1 5.5197 2.6795 -2.0676 34 1 9.8021 3.0903 -3.5289 35 1 9.8688 3.7991 -1.8972 36 1 9.8220 2.0312 -2.0986 37 1 7.2409 5.0323 -1.2580 38 1 8.1134 4.4787 0.1967 39 1 5.3455 4.2579 2.2458 40 1 7.0990 4.0236 2.0495 41 1 6.8192 6.2179 4.9935 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000372273418.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:09 Heat of formation + Delta-G solvation = -133.335879 kcal Electronic energy + Delta-G solvation = -21464.897684 eV Core-core repulsion = 18151.956076 eV Total energy + Delta-G solvation = -3312.941609 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.41445 -38.93472 -36.86440 -36.23141 -33.05502 -32.02618 -31.09215 -30.30144 -26.71491 -26.39619 -25.71444 -23.34144 -22.31164 -21.21542 -20.44800 -19.34395 -17.52992 -16.75724 -16.57805 -16.20214 -15.94027 -15.45736 -14.86880 -14.67316 -14.32815 -13.97017 -13.60701 -13.17600 -12.99908 -12.81625 -12.72825 -12.20067 -11.97214 -11.81811 -11.75957 -11.64362 -11.41393 -11.23383 -11.01972 -10.80144 -10.55206 -10.55037 -10.49474 -10.23323 -10.20500 -9.84341 -9.26365 -9.23816 -8.44650 -7.36426 -6.04122 -4.05835 2.41055 2.76335 3.31867 3.37902 3.41948 3.95028 4.41086 4.69821 4.81874 4.86608 4.92597 5.10796 5.15170 5.16212 5.31216 5.32345 5.44274 5.51350 5.55674 5.58290 5.64596 5.72290 5.74050 5.82416 5.90731 6.00489 6.18174 6.28921 6.34418 6.47936 6.59250 6.62991 7.08806 7.26116 7.45784 7.78557 7.92749 8.00030 8.13118 8.47262 9.02789 9.58978 11.06442 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.012415 B = 0.005546 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.744298 B = 5047.483457 C = 6952.021015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.360 6.360 4 C 0.466 3.534 5 O -0.511 6.511 6 C -0.096 4.096 7 C 0.084 3.916 8 H 0.060 0.940 9 C -0.115 4.115 10 C 0.063 3.937 11 H 0.063 0.937 12 O -0.381 6.381 13 C 0.031 3.969 14 C 0.038 3.962 15 N -0.518 5.518 16 C 0.187 3.813 17 C -0.505 4.505 18 H 0.064 0.936 19 C 0.055 3.945 20 N -0.900 5.900 21 Si 0.898 3.102 22 H -0.280 1.280 23 H -0.288 1.288 24 H -0.273 1.273 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.043 0.957 36 H 0.037 0.963 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.030 0.970 40 H -0.005 1.005 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.281 -10.001 -9.956 15.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.278 6.278 4 C 0.309 3.691 5 O -0.399 6.399 6 C -0.134 4.134 7 C -0.025 4.025 8 H 0.078 0.922 9 C -0.153 4.153 10 C 0.005 3.995 11 H 0.082 0.918 12 O -0.299 6.299 13 C -0.066 4.066 14 C -0.090 4.090 15 N -0.243 5.243 16 C 0.062 3.938 17 C -0.544 4.544 18 H 0.082 0.918 19 C -0.146 4.146 20 N -0.539 5.539 21 Si 0.726 3.274 22 H -0.206 1.206 23 H -0.214 1.214 24 H -0.198 1.198 25 H 0.095 0.905 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.048 0.952 40 H 0.013 0.987 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.503 -9.909 -10.113 15.190 hybrid contribution 0.969 0.219 0.928 1.359 sum -4.534 -9.690 -9.185 14.101 Atomic orbital electron populations 1.21799 0.92850 1.02706 1.03574 1.22968 0.95221 0.80744 1.02419 1.86535 1.25079 1.31903 1.84239 1.24022 0.80150 0.93249 0.71681 1.90628 1.60260 1.43465 1.45570 1.21321 0.95997 0.89448 1.06635 1.22138 0.91891 0.91550 0.96935 0.92208 1.22825 0.93946 1.00599 0.97934 1.23595 0.95008 0.97220 0.83722 0.91849 1.87879 1.19803 1.94212 1.28009 1.22743 0.81681 0.99952 1.02198 1.23148 0.92387 0.95646 0.97839 1.63435 1.23202 1.21850 1.15835 1.19974 0.95916 0.96737 0.81162 1.21148 1.48023 0.92222 0.93007 0.91756 1.24989 0.95553 0.98276 0.95784 1.69960 1.50324 1.35203 0.98443 0.86496 0.78104 0.85264 0.77544 1.20595 1.21382 1.19832 0.90493 0.91521 0.91411 0.91365 0.91438 0.87114 0.86957 0.90171 0.90265 0.90035 0.93827 0.94427 0.90611 0.92068 0.95243 0.98738 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.29 37.16 0.38 -0.84 16 2 C 0.06 0.66 6.19 37.16 0.23 0.89 16 3 O -0.36 -5.01 10.22 -39.24 -0.40 -5.41 16 4 C 0.47 7.23 7.80 36.01 0.28 7.51 16 5 O -0.51 -8.88 14.38 -18.76 -0.27 -9.15 16 6 C -0.10 -1.52 5.64 -27.88 -0.16 -1.68 16 7 C 0.08 1.53 1.97 -66.19 -0.13 1.40 16 8 H 0.06 1.18 7.61 -51.93 -0.40 0.79 16 9 C -0.12 -1.90 5.60 -24.53 -0.14 -2.04 16 10 C 0.06 1.07 3.40 -24.84 -0.08 0.99 16 11 H 0.06 1.04 7.88 -51.93 -0.41 0.63 16 12 O -0.38 -6.14 10.43 -35.23 -0.37 -6.50 16 13 C 0.03 0.39 10.88 101.05 1.10 1.49 16 14 C 0.04 0.75 6.28 -2.84 -0.02 0.73 16 15 N -0.52 -10.96 4.77 -224.82 -1.07 -12.03 16 16 C 0.19 4.77 4.34 -4.97 -0.02 4.75 16 17 C -0.51 -13.99 8.92 -34.44 -0.31 -14.30 16 18 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 19 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 20 N -0.90 -26.44 13.29 55.43 0.74 -25.71 16 21 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 24 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 25 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 29 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 30 H 0.11 1.58 8.01 -51.93 -0.42 1.17 16 31 H 0.11 1.84 8.14 -51.93 -0.42 1.42 16 32 H 0.08 1.31 7.23 -51.93 -0.38 0.93 16 33 H 0.08 1.27 7.96 -51.93 -0.41 0.86 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.04 0.43 8.11 -51.93 -0.42 0.00 16 37 H 0.08 1.49 8.06 -51.93 -0.42 1.08 16 38 H 0.06 1.29 7.36 -51.93 -0.38 0.91 16 39 H 0.03 0.79 8.00 -51.93 -0.42 0.38 16 40 H -0.01 -0.14 7.80 -51.93 -0.41 -0.55 16 41 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 339.97 15.07 5.12 5.12 Total: -1.00 -31.02 339.97 -7.21 -38.23 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -6.98 Total: -1.36 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: 1.04 Total: 0.35 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: -0.34 Total: -37.74 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -1.04 Total: -21.06 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.02 -7.21 -38.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000372273418.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.109 kcal (2) G-P(sol) polarization free energy of solvation -31.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds