Wall clock time and date at job start Mon Mar 30 2020 04:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45199 * 109.46887 * 2 1 4 4 C 1.34225 * 116.99951 * 179.97438 * 3 2 1 5 5 O 1.20835 * 119.99874 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00321 * 179.97438 * 4 3 2 7 7 C 1.52998 * 109.47210 * 175.49816 * 6 4 3 8 8 H 1.09003 * 110.33669 * 308.12155 * 7 6 4 9 9 C 1.54906 * 110.37486 * 70.37805 * 7 6 4 10 10 C 1.55263 * 101.59887 * 155.81667 * 9 7 6 11 11 H 1.09001 * 110.75751 * 82.93044 * 10 9 7 12 12 O 1.42898 * 110.74072 * 206.05149 * 10 9 7 13 13 C 1.42907 * 113.99809 * 205.15094 * 12 10 9 14 14 C 1.54317 * 103.08477 * 324.48738 * 10 9 7 15 15 N 1.47442 * 107.23183 * 22.20697 * 14 10 9 16 16 C 1.46907 * 110.99909 * 123.25896 * 15 14 10 17 17 C 1.50700 * 109.47223 * 74.84030 * 16 15 14 18 18 H 1.07997 * 119.99856 * 359.97438 * 17 16 15 19 19 C 1.37871 * 119.99594 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00392 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99677 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47192 * 90.00176 * 21 19 17 23 23 H 1.48509 * 109.47028 * 209.99890 * 21 19 17 24 24 H 1.48495 * 109.47123 * 329.99936 * 21 19 17 25 25 H 1.08994 * 109.47057 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46751 * 60.00291 * 1 2 3 27 27 H 1.08994 * 109.47076 * 300.00209 * 1 2 3 28 28 H 1.08999 * 109.46751 * 119.99709 * 2 1 3 29 29 H 1.08994 * 109.47076 * 239.99790 * 2 1 3 30 30 H 1.08999 * 109.47031 * 295.49805 * 6 4 3 31 31 H 1.08999 * 109.47151 * 55.49641 * 6 4 3 32 32 H 1.08998 * 110.98937 * 273.98677 * 9 7 6 33 33 H 1.08997 * 110.99317 * 37.80608 * 9 7 6 34 34 H 1.09003 * 109.47129 * 179.97438 * 13 12 10 35 35 H 1.08996 * 109.47040 * 300.00473 * 13 12 10 36 36 H 1.09002 * 109.46609 * 60.00223 * 13 12 10 37 37 H 1.08993 * 109.89298 * 262.79619 * 14 10 9 38 38 H 1.09002 * 110.02154 * 141.68427 * 14 10 9 39 39 H 1.09000 * 109.46609 * 194.84060 * 16 15 14 40 40 H 1.08995 * 109.47160 * 314.83564 * 16 15 14 41 41 H 0.97003 * 119.99959 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9207 2.9375 0.0000 7 6 5.4444 2.8591 0.1140 8 1 5.7294 2.2345 0.9606 9 6 6.0554 2.3029 -1.1963 10 6 7.4958 2.8795 -1.1385 11 1 8.1382 2.2530 -0.5196 12 8 8.0399 3.0148 -2.4529 13 6 9.4679 2.9821 -2.4970 14 6 7.2922 4.2636 -0.4871 15 7 6.0202 4.2133 0.2568 16 6 6.2240 4.5523 1.6716 17 6 6.4376 6.0380 1.8065 18 1 6.4238 6.6674 0.9290 19 6 6.6517 6.5935 3.0501 20 7 6.6690 5.8270 4.1186 21 14 6.9172 8.4350 3.2172 22 1 5.6084 9.1078 3.4164 23 1 7.7950 8.7046 4.3843 24 1 7.5592 8.9565 1.9839 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5138 0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.6512 3.4417 -0.9280 31 1 3.5213 3.4962 0.8463 32 1 6.0687 1.2130 -1.1890 33 1 5.5197 2.6795 -2.0676 34 1 9.8021 3.0903 -3.5289 35 1 9.8688 3.7991 -1.8972 36 1 9.8220 2.0312 -2.0986 37 1 7.2409 5.0323 -1.2580 38 1 8.1134 4.4787 0.1967 39 1 5.3455 4.2579 2.2458 40 1 7.0990 4.0236 2.0495 41 1 6.8192 6.2179 4.9935 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000372273418.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:09 Heat of formation + Delta-G solvation = -153.603033 kcal Electronic energy + Delta-G solvation = -21465.776534 eV Core-core repulsion = 18151.956076 eV Total energy + Delta-G solvation = -3313.820459 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.65957 -40.36068 -38.12251 -37.53232 -35.08173 -33.18575 -32.43574 -31.75730 -28.44246 -27.74390 -27.12529 -24.53500 -23.92329 -22.46974 -21.91915 -20.84104 -18.76819 -18.40171 -18.01363 -17.69969 -17.21387 -16.90764 -16.41262 -16.05052 -15.63613 -15.25604 -15.03047 -14.68284 -14.47221 -14.06515 -13.79681 -13.62752 -13.50089 -13.29918 -13.00571 -12.84247 -12.72473 -12.56840 -12.48856 -12.46016 -12.24387 -12.07696 -11.86853 -11.60403 -11.50958 -11.48020 -11.25940 -10.61896 -10.57750 -9.13640 -8.19782 -6.30124 1.16934 1.42675 1.43699 1.54844 1.64464 2.41293 2.71621 3.12785 3.23356 3.55088 3.68811 3.83686 3.98752 4.02813 4.09762 4.11787 4.27347 4.35195 4.38217 4.53023 4.55048 4.64998 4.70552 4.81372 4.85291 4.91384 4.94662 4.95849 4.97954 5.02873 5.15424 5.16291 5.21939 5.47816 5.66875 6.02178 6.21266 6.23062 6.47967 6.74027 6.85462 7.40021 8.90884 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.012415 B = 0.005546 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.744298 B = 5047.483457 C = 6952.021015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 O -0.362 6.362 4 C 0.473 3.527 5 O -0.532 6.532 6 C -0.091 4.091 7 C 0.083 3.917 8 H 0.038 0.962 9 C -0.103 4.103 10 C 0.074 3.926 11 H 0.067 0.933 12 O -0.390 6.390 13 C 0.023 3.977 14 C 0.039 3.961 15 N -0.520 5.520 16 C 0.205 3.795 17 C -0.521 4.521 18 H 0.062 0.938 19 C 0.004 3.996 20 N -0.935 5.935 21 Si 0.968 3.032 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.265 1.265 25 H 0.101 0.899 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.131 0.869 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.040 0.960 36 H 0.050 0.950 37 H 0.076 0.924 38 H 0.040 0.960 39 H 0.008 0.992 40 H -0.035 1.035 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.830 -9.858 -11.412 16.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.022 4.022 3 O -0.279 6.279 4 C 0.317 3.683 5 O -0.422 6.422 6 C -0.129 4.129 7 C -0.026 4.026 8 H 0.057 0.943 9 C -0.141 4.141 10 C 0.015 3.985 11 H 0.085 0.915 12 O -0.309 6.309 13 C -0.073 4.073 14 C -0.089 4.089 15 N -0.245 5.245 16 C 0.078 3.922 17 C -0.559 4.559 18 H 0.081 0.919 19 C -0.194 4.194 20 N -0.575 5.575 21 Si 0.793 3.207 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.190 1.190 25 H 0.120 0.880 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.149 0.851 31 H 0.122 0.878 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.126 0.874 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.058 0.942 39 H 0.026 0.974 40 H -0.017 1.017 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.068 -9.774 -11.593 16.332 hybrid contribution 1.139 0.105 1.355 1.773 sum -4.929 -9.669 -10.238 14.920 Atomic orbital electron populations 1.21827 0.90377 1.04394 1.03694 1.23318 0.97154 0.79181 1.02593 1.86523 1.23810 1.33898 1.83695 1.23776 0.80700 0.92597 0.71190 1.90618 1.60888 1.43973 1.46727 1.21209 0.94231 0.90177 1.07319 1.22169 0.93527 0.89625 0.97289 0.94344 1.22738 0.93509 1.00799 0.97007 1.23381 0.95591 0.95258 0.84304 0.91492 1.87860 1.21934 1.94180 1.26890 1.23001 0.79747 1.00572 1.04008 1.23111 0.90946 0.97647 0.97240 1.63371 1.24110 1.23946 1.13086 1.19605 0.93489 0.95654 0.83416 1.21432 1.48100 0.93215 0.93165 0.91945 1.25876 0.95014 1.03188 0.95338 1.70084 1.51084 1.37364 0.99006 0.85403 0.78302 0.79287 0.77749 1.19725 1.20912 1.18957 0.88002 0.91051 0.91613 0.91694 0.90852 0.85086 0.87823 0.89537 0.89167 0.87443 0.94129 0.93172 0.90569 0.94189 0.97403 1.01715 0.92694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 10.29 71.98 0.74 -1.30 16 2 C 0.05 1.05 6.19 71.98 0.45 1.49 16 3 O -0.36 -9.71 10.22 -51.37 -0.53 -10.24 16 4 C 0.47 14.45 7.80 71.24 0.56 15.01 16 5 O -0.53 -18.28 14.38 21.94 0.32 -17.96 16 6 C -0.09 -2.88 5.64 29.85 0.17 -2.71 16 7 C 0.08 3.04 1.97 45.38 0.09 3.13 16 8 H 0.04 1.58 7.61 -2.39 -0.02 1.56 16 9 C -0.10 -3.29 5.60 32.02 0.18 -3.11 16 10 C 0.07 2.45 3.40 31.82 0.11 2.56 16 11 H 0.07 2.17 7.88 -2.39 -0.02 2.15 16 12 O -0.39 -11.91 10.43 -148.98 -1.55 -13.46 16 13 C 0.02 0.52 10.88 113.37 1.23 1.76 16 14 C 0.04 1.55 6.28 86.65 0.54 2.09 16 15 N -0.52 -22.46 4.77 -865.18 -4.12 -26.58 16 16 C 0.20 10.85 4.34 85.56 0.37 11.22 16 17 C -0.52 -29.39 8.92 25.60 0.23 -29.16 16 18 H 0.06 3.48 7.81 -2.91 -0.02 3.45 16 19 C 0.00 0.22 5.46 84.65 0.46 0.68 16 20 N -0.93 -56.02 13.29 21.45 0.28 -55.73 16 21 Si 0.97 44.10 29.54 68.60 2.03 46.13 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 25 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.06 1.38 8.13 -2.39 -0.02 1.36 16 29 H 0.07 1.43 8.13 -2.39 -0.02 1.41 16 30 H 0.13 3.57 8.01 -2.39 -0.02 3.55 16 31 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 32 H 0.09 2.71 7.23 -2.39 -0.02 2.69 16 33 H 0.09 2.71 7.96 -2.39 -0.02 2.69 16 34 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.05 1.04 8.11 -2.39 -0.02 1.02 16 37 H 0.08 2.99 8.06 -2.39 -0.02 2.97 16 38 H 0.04 1.74 7.36 -2.39 -0.02 1.72 16 39 H 0.01 0.45 8.00 -2.39 -0.02 0.43 16 40 H -0.03 -2.02 7.80 -2.39 -0.02 -2.04 16 41 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -66.71 339.97 2.54 -64.17 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 0.99 Total: 12.03 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: 5.13 Total: 1.65 kcal Atomic # 7 Polarization: -78.48 SS G_CDS: -3.84 Total: -82.31 kcal Atomic # 8 Polarization: -39.90 SS G_CDS: -1.76 Total: -41.66 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -66.71 2.54 -64.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000372273418.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.432 kcal (2) G-P(sol) polarization free energy of solvation -66.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds