Wall clock time and date at job start Mon Mar 30 2020 04:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45196 * 109.47352 * 2 1 4 4 C 1.34222 * 117.00279 * 180.02562 * 3 2 1 5 5 O 1.20831 * 119.99694 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00428 * 180.02562 * 4 3 2 7 7 C 1.52999 * 109.47251 * 174.27379 * 6 4 3 8 8 H 1.08999 * 109.88043 * 56.81348 * 7 6 4 9 9 C 1.54313 * 109.88882 * 295.77409 * 7 6 4 10 10 C 1.55137 * 103.02275 * 218.14971 * 9 7 6 11 11 H 1.09007 * 110.98759 * 277.56223 * 10 9 7 12 12 O 1.42896 * 110.99401 * 153.74909 * 10 9 7 13 13 C 1.42900 * 114.00438 * 150.00153 * 12 10 9 14 14 C 1.54908 * 101.64992 * 35.65434 * 10 9 7 15 15 N 1.47440 * 110.02138 * 177.92668 * 7 6 4 16 16 C 1.46900 * 111.00393 * 356.22386 * 15 7 6 17 17 C 1.50698 * 109.47307 * 184.57599 * 16 15 7 18 18 H 1.08001 * 119.99911 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00054 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99998 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00239 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46975 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46978 * 120.00165 * 21 19 17 24 24 H 1.48499 * 109.47212 * 239.99789 * 21 19 17 25 25 H 1.08998 * 109.47439 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47062 * 299.99968 * 1 2 3 27 27 H 1.09006 * 109.47365 * 59.99539 * 1 2 3 28 28 H 1.08997 * 109.46473 * 239.99913 * 2 1 3 29 29 H 1.08995 * 109.46663 * 120.00322 * 2 1 3 30 30 H 1.09001 * 109.47062 * 54.27220 * 6 4 3 31 31 H 1.09003 * 109.47227 * 294.27535 * 6 4 3 32 32 H 1.08998 * 110.71026 * 336.53907 * 9 7 6 33 33 H 1.09010 * 110.70421 * 99.76632 * 9 7 6 34 34 H 1.09000 * 109.47220 * 59.99940 * 13 12 10 35 35 H 1.08996 * 109.47090 * 180.02562 * 13 12 10 36 36 H 1.08999 * 109.46729 * 300.00017 * 13 12 10 37 37 H 1.09000 * 110.37007 * 204.10470 * 14 10 9 38 38 H 1.08998 * 110.46643 * 81.81368 * 14 10 9 39 39 H 1.09000 * 109.46989 * 304.57364 * 16 15 7 40 40 H 1.08999 * 109.47038 * 64.57285 * 16 15 7 41 41 H 0.96999 * 120.00419 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5865 -0.0015 6 6 3.9208 2.9373 0.0000 7 6 5.4421 2.8598 0.1432 8 1 5.8591 2.2489 -0.6574 9 6 5.8102 2.2526 1.5132 10 6 7.0560 3.0746 1.9365 11 1 7.9599 2.6812 1.4714 12 8 7.1879 3.1083 3.3590 13 6 8.5381 3.2122 3.8153 14 6 6.7098 4.4774 1.3779 15 7 6.0233 4.2140 0.0953 16 6 4.9873 5.2227 -0.1640 17 6 5.6314 6.5765 -0.3175 18 1 6.7031 6.6775 -0.2307 19 6 4.8524 7.6862 -0.5677 20 7 3.5472 7.5632 -0.6730 21 14 5.6507 9.3643 -0.7573 22 1 7.1212 9.2339 -0.5968 23 1 5.3466 9.9077 -2.1055 24 1 5.1188 10.2854 0.2790 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.5056 3.5020 0.8348 31 1 3.6688 3.4352 -0.9364 32 1 4.9975 2.3896 2.2264 33 1 6.0614 1.1967 1.4118 34 1 8.9825 4.1296 3.4293 35 1 8.5528 3.2315 4.9050 36 1 9.1087 2.3544 3.4596 37 1 7.6194 5.0540 1.2100 38 1 6.0465 5.0069 2.0617 39 1 4.4536 4.9684 -1.0798 40 1 4.2863 5.2464 0.6703 41 1 2.9991 8.3440 -0.8486 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000372273426.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:17 Heat of formation + Delta-G solvation = -126.448285 kcal Electronic energy + Delta-G solvation = -21711.020998 eV Core-core repulsion = 18398.378058 eV Total energy + Delta-G solvation = -3312.642940 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.44949 -39.00341 -36.95480 -36.24425 -32.97485 -31.95858 -30.85526 -30.57696 -26.83284 -26.18609 -25.72774 -23.21820 -22.54292 -21.24516 -20.67186 -18.74128 -17.66085 -16.86046 -16.53446 -16.27289 -15.64184 -15.42555 -14.87490 -14.67357 -14.42389 -13.97270 -13.53643 -13.23567 -12.98552 -12.80235 -12.76486 -12.31795 -11.96770 -11.79831 -11.70754 -11.58097 -11.33758 -11.16837 -11.07693 -10.79438 -10.61183 -10.47343 -10.45700 -10.25374 -10.17301 -9.80701 -9.22367 -9.12489 -8.47310 -7.33207 -6.06479 -4.07471 2.45903 2.84717 3.29708 3.37433 3.42040 3.89584 4.41161 4.80304 4.86656 4.94729 4.96308 5.13354 5.19363 5.21023 5.27933 5.30677 5.32349 5.46179 5.55576 5.61606 5.68706 5.70782 5.74151 5.86501 5.91622 6.02782 6.18028 6.28204 6.44287 6.57127 6.60827 6.67598 7.07464 7.24352 7.45799 7.73808 7.94063 7.99406 8.10281 8.46668 8.99590 9.57151 11.04446 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.012226 B = 0.006103 C = 0.004279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.715550 B = 4586.712520 C = 6542.339319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.060 3.940 3 O -0.359 6.359 4 C 0.467 3.533 5 O -0.513 6.513 6 C -0.131 4.131 7 C 0.088 3.912 8 H 0.088 0.912 9 C -0.129 4.129 10 C 0.071 3.929 11 H 0.073 0.927 12 O -0.382 6.382 13 C 0.033 3.967 14 C 0.041 3.959 15 N -0.516 5.516 16 C 0.181 3.819 17 C -0.509 4.509 18 H 0.063 0.937 19 C 0.057 3.943 20 N -0.897 5.897 21 Si 0.897 3.103 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.285 1.285 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.109 0.891 31 H 0.123 0.877 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.043 0.957 35 H 0.081 0.919 36 H 0.038 0.962 37 H 0.074 0.926 38 H 0.056 0.944 39 H 0.038 0.962 40 H -0.001 1.001 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.083 -12.745 4.270 13.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 O -0.276 6.276 4 C 0.311 3.689 5 O -0.402 6.402 6 C -0.170 4.170 7 C -0.020 4.020 8 H 0.106 0.894 9 C -0.167 4.167 10 C 0.013 3.987 11 H 0.091 0.909 12 O -0.300 6.300 13 C -0.064 4.064 14 C -0.087 4.087 15 N -0.242 5.242 16 C 0.056 3.944 17 C -0.548 4.548 18 H 0.081 0.919 19 C -0.145 4.145 20 N -0.537 5.537 21 Si 0.725 3.275 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.211 1.211 25 H 0.095 0.905 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.127 0.873 31 H 0.141 0.859 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.061 0.939 35 H 0.099 0.901 36 H 0.056 0.944 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.055 0.945 40 H 0.017 0.983 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.152 -12.918 3.951 13.510 hybrid contribution -0.083 0.851 0.362 0.928 sum 0.069 -12.068 4.313 12.815 Atomic orbital electron populations 1.21802 0.92868 1.02629 1.03673 1.22958 0.95259 0.80840 1.02296 1.86569 1.25142 1.31777 1.84116 1.24073 0.80140 0.93168 0.71543 1.90612 1.60286 1.43408 1.45861 1.22234 0.97340 0.89920 1.07460 1.22211 0.89935 0.92979 0.96917 0.89416 1.22891 0.97453 0.99776 0.96603 1.23440 0.98252 0.96655 0.80367 0.90914 1.87874 1.26090 1.94544 1.21517 1.22743 0.83810 0.99872 0.99996 1.23241 0.99728 0.94974 0.90772 1.63956 1.29333 1.00712 1.30172 1.20068 0.88917 0.89339 0.96078 1.21182 0.94008 0.91316 1.48277 0.91904 1.24965 0.94802 0.99271 0.95420 1.69947 1.03993 1.30129 1.49595 0.86455 0.79576 0.83849 0.77633 1.19692 1.21001 1.21107 0.90529 0.91468 0.91403 0.91443 0.91493 0.87311 0.85898 0.91159 0.90313 0.93867 0.90081 0.94375 0.90785 0.92541 0.94464 0.98323 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.29 37.16 0.38 -0.99 16 2 C 0.06 0.71 6.19 37.16 0.23 0.94 16 3 O -0.36 -5.48 10.22 -39.24 -0.40 -5.88 16 4 C 0.47 7.73 7.65 36.01 0.28 8.00 16 5 O -0.51 -9.07 14.60 -18.75 -0.27 -9.34 16 6 C -0.13 -2.30 3.97 -27.88 -0.11 -2.41 16 7 C 0.09 1.61 3.09 -66.73 -0.21 1.40 16 8 H 0.09 1.59 7.95 -51.93 -0.41 1.17 16 9 C -0.13 -2.17 5.14 -24.91 -0.13 -2.30 16 10 C 0.07 1.19 3.54 -24.59 -0.09 1.10 16 11 H 0.07 1.12 7.83 -51.92 -0.41 0.71 16 12 O -0.38 -6.24 10.51 -35.23 -0.37 -6.61 16 13 C 0.03 0.40 10.85 101.05 1.10 1.49 16 14 C 0.04 0.81 5.60 -2.30 -0.01 0.80 16 15 N -0.52 -10.91 5.20 -224.79 -1.17 -12.07 16 16 C 0.18 4.46 3.44 -4.98 -0.02 4.45 16 17 C -0.51 -13.93 8.70 -34.44 -0.30 -14.23 16 18 H 0.06 1.72 7.50 -52.49 -0.39 1.33 16 19 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 20 N -0.90 -25.87 13.29 55.43 0.74 -25.13 16 21 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 29 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 30 H 0.11 1.97 6.93 -51.93 -0.36 1.61 16 31 H 0.12 2.24 6.34 -51.93 -0.33 1.91 16 32 H 0.07 1.22 7.82 -51.93 -0.41 0.81 16 33 H 0.08 1.28 7.69 -51.92 -0.40 0.88 16 34 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.04 0.41 8.12 -51.93 -0.42 -0.01 16 37 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 38 H 0.06 1.22 7.71 -51.93 -0.40 0.82 16 39 H 0.04 0.96 6.37 -51.93 -0.33 0.63 16 40 H 0.00 -0.02 6.74 -51.93 -0.35 -0.37 16 41 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 332.89 15.07 5.02 5.02 Total: -1.00 -30.42 332.89 -7.18 -37.60 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -6.72 Total: 0.37 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: 1.02 Total: -0.26 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: -0.43 Total: -37.21 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -1.05 Total: -21.84 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.42 -7.18 -37.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000372273426.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.849 kcal (2) G-P(sol) polarization free energy of solvation -30.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds