Wall clock time and date at job start Mon Mar 30 2020 04:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45196 * 109.47352 * 2 1 4 4 C 1.34222 * 117.00279 * 180.02562 * 3 2 1 5 5 O 1.20831 * 119.99694 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00428 * 180.02562 * 4 3 2 7 7 C 1.52999 * 109.47251 * 174.27379 * 6 4 3 8 8 H 1.08999 * 109.88043 * 56.81348 * 7 6 4 9 9 C 1.54313 * 109.88882 * 295.77409 * 7 6 4 10 10 C 1.55137 * 103.02275 * 218.14971 * 9 7 6 11 11 H 1.09007 * 110.98759 * 277.56223 * 10 9 7 12 12 O 1.42896 * 110.99401 * 153.74909 * 10 9 7 13 13 C 1.42900 * 114.00438 * 150.00153 * 12 10 9 14 14 C 1.54908 * 101.64992 * 35.65434 * 10 9 7 15 15 N 1.47440 * 110.02138 * 177.92668 * 7 6 4 16 16 C 1.46900 * 111.00393 * 356.22386 * 15 7 6 17 17 C 1.50698 * 109.47307 * 184.57599 * 16 15 7 18 18 H 1.08001 * 119.99911 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00054 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99998 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00239 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46975 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46978 * 120.00165 * 21 19 17 24 24 H 1.48499 * 109.47212 * 239.99789 * 21 19 17 25 25 H 1.08998 * 109.47439 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47062 * 299.99968 * 1 2 3 27 27 H 1.09006 * 109.47365 * 59.99539 * 1 2 3 28 28 H 1.08997 * 109.46473 * 239.99913 * 2 1 3 29 29 H 1.08995 * 109.46663 * 120.00322 * 2 1 3 30 30 H 1.09001 * 109.47062 * 54.27220 * 6 4 3 31 31 H 1.09003 * 109.47227 * 294.27535 * 6 4 3 32 32 H 1.08998 * 110.71026 * 336.53907 * 9 7 6 33 33 H 1.09010 * 110.70421 * 99.76632 * 9 7 6 34 34 H 1.09000 * 109.47220 * 59.99940 * 13 12 10 35 35 H 1.08996 * 109.47090 * 180.02562 * 13 12 10 36 36 H 1.08999 * 109.46729 * 300.00017 * 13 12 10 37 37 H 1.09000 * 110.37007 * 204.10470 * 14 10 9 38 38 H 1.08998 * 110.46643 * 81.81368 * 14 10 9 39 39 H 1.09000 * 109.46989 * 304.57364 * 16 15 7 40 40 H 1.08999 * 109.47038 * 64.57285 * 16 15 7 41 41 H 0.96999 * 120.00419 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5865 -0.0015 6 6 3.9208 2.9373 0.0000 7 6 5.4421 2.8598 0.1432 8 1 5.8591 2.2489 -0.6574 9 6 5.8102 2.2526 1.5132 10 6 7.0560 3.0746 1.9365 11 1 7.9599 2.6812 1.4714 12 8 7.1879 3.1083 3.3590 13 6 8.5381 3.2122 3.8153 14 6 6.7098 4.4774 1.3779 15 7 6.0233 4.2140 0.0953 16 6 4.9873 5.2227 -0.1640 17 6 5.6314 6.5765 -0.3175 18 1 6.7031 6.6775 -0.2307 19 6 4.8524 7.6862 -0.5677 20 7 3.5472 7.5632 -0.6730 21 14 5.6507 9.3643 -0.7573 22 1 7.1212 9.2339 -0.5968 23 1 5.3466 9.9077 -2.1055 24 1 5.1188 10.2854 0.2790 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.5056 3.5020 0.8348 31 1 3.6688 3.4352 -0.9364 32 1 4.9975 2.3896 2.2264 33 1 6.0614 1.1967 1.4118 34 1 8.9825 4.1296 3.4293 35 1 8.5528 3.2315 4.9050 36 1 9.1087 2.3544 3.4596 37 1 7.6194 5.0540 1.2100 38 1 6.0465 5.0069 2.0617 39 1 4.4536 4.9684 -1.0798 40 1 4.2863 5.2464 0.6703 41 1 2.9991 8.3440 -0.8486 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000372273426.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:17 Heat of formation + Delta-G solvation = -146.601632 kcal Electronic energy + Delta-G solvation = -21711.894913 eV Core-core repulsion = 18398.378058 eV Total energy + Delta-G solvation = -3313.516855 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.79473 -40.42999 -38.24097 -37.56613 -34.99983 -33.07008 -32.30335 -32.07646 -28.42521 -27.67386 -27.08897 -24.43817 -24.19212 -22.52307 -22.11124 -20.32541 -19.12042 -18.38836 -17.84512 -17.67640 -17.21745 -16.88983 -16.31337 -16.13620 -15.84846 -15.14043 -14.99421 -14.70360 -14.44298 -14.18267 -13.95194 -13.70423 -13.51420 -13.30048 -12.96275 -12.87925 -12.68026 -12.55930 -12.47154 -12.34974 -12.32912 -12.14299 -11.75501 -11.62547 -11.53286 -11.50026 -11.11992 -10.59314 -10.50810 -9.07887 -8.18982 -6.27463 1.11314 1.41777 1.43026 1.55559 1.64796 2.41489 2.64464 3.14567 3.43009 3.53939 3.69707 3.78564 3.86980 4.00676 4.03701 4.08799 4.22108 4.33778 4.38185 4.53020 4.58189 4.59064 4.71324 4.82424 4.85563 4.87054 4.91523 4.93826 4.98901 5.11249 5.12220 5.18178 5.32815 5.43446 5.66395 6.00465 6.16120 6.31580 6.53196 6.69796 6.86959 7.41687 8.92066 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.012226 B = 0.006103 C = 0.004279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.715550 B = 4586.712520 C = 6542.339319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.051 3.949 3 O -0.368 6.368 4 C 0.477 3.523 5 O -0.523 6.523 6 C -0.126 4.126 7 C 0.089 3.911 8 H 0.094 0.906 9 C -0.120 4.120 10 C 0.085 3.915 11 H 0.094 0.906 12 O -0.401 6.401 13 C 0.024 3.976 14 C 0.042 3.958 15 N -0.524 5.524 16 C 0.199 3.801 17 C -0.527 4.527 18 H 0.059 0.941 19 C 0.007 3.993 20 N -0.929 5.929 21 Si 0.963 3.037 22 H -0.266 1.266 23 H -0.278 1.278 24 H -0.280 1.280 25 H 0.105 0.895 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.044 0.956 35 H 0.101 0.899 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.029 0.971 39 H 0.021 0.979 40 H -0.024 1.024 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.697 -13.610 4.631 14.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.022 4.022 3 O -0.285 6.285 4 C 0.321 3.679 5 O -0.412 6.412 6 C -0.164 4.164 7 C -0.020 4.020 8 H 0.112 0.888 9 C -0.159 4.159 10 C 0.027 3.973 11 H 0.112 0.888 12 O -0.319 6.319 13 C -0.072 4.072 14 C -0.087 4.087 15 N -0.249 5.249 16 C 0.073 3.927 17 C -0.565 4.565 18 H 0.077 0.923 19 C -0.192 4.192 20 N -0.570 5.570 21 Si 0.789 3.211 22 H -0.190 1.190 23 H -0.204 1.204 24 H -0.206 1.206 25 H 0.124 0.876 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.115 0.885 31 H 0.129 0.871 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.063 0.937 35 H 0.119 0.881 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.048 0.952 39 H 0.039 0.961 40 H -0.006 1.006 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.935 -13.800 4.321 14.491 hybrid contribution -0.348 1.053 0.279 1.143 sum 0.587 -12.748 4.600 13.565 Atomic orbital electron populations 1.21841 0.90592 1.04475 1.03522 1.23342 0.97068 0.78996 1.02822 1.86552 1.24082 1.34224 1.83647 1.23618 0.80691 0.92262 0.71359 1.90597 1.60666 1.43456 1.46508 1.22022 0.97198 0.90858 1.06318 1.22231 0.90187 0.91398 0.98165 0.88816 1.22808 0.97398 1.00375 0.95275 1.23272 0.98837 0.94152 0.81069 0.88791 1.87855 1.28771 1.94490 1.20804 1.23017 0.82080 1.00820 1.01296 1.23212 0.98738 0.96998 0.89722 1.63829 1.28468 1.01269 1.31310 1.19701 0.89024 0.89629 0.94365 1.21501 0.93966 0.92779 1.48261 0.92296 1.25797 0.95300 1.03067 0.95002 1.70056 1.05290 1.31297 1.50323 0.85420 0.78868 0.79134 0.77723 1.18970 1.20402 1.20587 0.87636 0.91596 0.91571 0.90942 0.90967 0.88506 0.87133 0.91984 0.88946 0.93730 0.88111 0.92437 0.90938 0.95219 0.96084 1.00592 0.92679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 10.29 71.98 0.74 -1.65 16 2 C 0.05 1.14 6.19 71.98 0.45 1.58 16 3 O -0.37 -11.14 10.22 -51.34 -0.52 -11.66 16 4 C 0.48 15.75 7.65 71.24 0.54 16.29 16 5 O -0.52 -17.99 14.60 21.95 0.32 -17.67 16 6 C -0.13 -4.54 3.97 29.85 0.12 -4.42 16 7 C 0.09 3.23 3.09 45.26 0.14 3.37 16 8 H 0.09 3.33 7.95 -2.39 -0.02 3.31 16 9 C -0.12 -3.95 5.14 31.77 0.16 -3.79 16 10 C 0.09 2.74 3.54 31.98 0.11 2.86 16 11 H 0.09 2.65 7.83 -2.38 -0.02 2.63 16 12 O -0.40 -12.49 10.51 -148.98 -1.57 -14.06 16 13 C 0.02 0.53 10.85 113.37 1.23 1.76 16 14 C 0.04 1.66 5.60 86.77 0.49 2.15 16 15 N -0.52 -22.50 5.20 -865.10 -4.49 -26.99 16 16 C 0.20 10.17 3.44 85.56 0.29 10.47 16 17 C -0.53 -29.38 8.70 25.60 0.22 -29.16 16 18 H 0.06 3.26 7.50 -2.91 -0.02 3.24 16 19 C 0.01 0.38 5.46 84.65 0.46 0.84 16 20 N -0.93 -54.57 13.29 21.45 0.28 -54.28 16 21 Si 0.96 43.90 29.54 68.60 2.03 45.93 16 22 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 23 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 25 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 27 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 28 H 0.07 1.55 8.13 -2.39 -0.02 1.53 16 29 H 0.07 1.54 8.13 -2.39 -0.02 1.52 16 30 H 0.10 3.71 6.93 -2.39 -0.02 3.69 16 31 H 0.11 4.25 6.34 -2.39 -0.02 4.23 16 32 H 0.06 2.14 7.82 -2.39 -0.02 2.12 16 33 H 0.09 2.81 7.69 -2.38 -0.02 2.80 16 34 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.06 1.06 8.12 -2.39 -0.02 1.04 16 37 H 0.07 2.85 8.04 -2.39 -0.02 2.83 16 38 H 0.03 1.32 7.71 -2.39 -0.02 1.30 16 39 H 0.02 1.14 6.37 -2.39 -0.02 1.13 16 40 H -0.02 -1.29 6.74 -2.39 -0.02 -1.31 16 41 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -64.96 332.89 2.00 -62.95 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: 1.00 Total: 15.48 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: 4.96 Total: 0.30 kcal Atomic # 7 Polarization: -77.06 SS G_CDS: -4.21 Total: -81.27 kcal Atomic # 8 Polarization: -41.62 SS G_CDS: -1.77 Total: -43.39 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -64.96 2.00 -62.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000372273426.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.647 kcal (2) G-P(sol) polarization free energy of solvation -64.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds