Wall clock time and date at job start Mon Mar 30 2020 05:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86804 * 119.99612 * 2 1 4 4 H 1.48499 * 109.46937 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47202 * 299.99798 * 3 2 1 6 6 H 1.48498 * 109.47283 * 60.00060 * 3 2 1 7 7 C 1.38948 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99862 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00244 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00294 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99669 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00138 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47038 * 179.97438 * 12 10 9 14 14 C 1.46894 * 110.99853 * 179.97438 * 13 12 10 15 15 H 1.08998 * 109.50868 * 325.00330 * 14 13 12 16 16 C 1.53123 * 109.50574 * 85.07956 * 14 13 12 17 17 C 1.53111 * 109.16651 * 177.59613 * 16 14 13 18 18 C 1.53041 * 109.27760 * 302.34741 * 17 16 14 19 19 N 1.46846 * 109.52694 * 59.17664 * 18 17 16 20 20 C 1.46896 * 111.00228 * 174.16272 * 19 18 17 21 21 C 1.53001 * 109.47141 * 195.88925 * 20 19 18 22 22 O 1.42905 * 109.46795 * 64.17235 * 21 20 19 23 23 C 1.46854 * 111.23161 * 298.28349 * 19 18 17 24 24 H 0.97001 * 120.00409 * 0.02562 * 1 2 3 25 25 H 0.97005 * 119.99862 * 0.02562 * 9 7 2 26 26 H 1.08991 * 109.47076 * 59.99731 * 12 10 9 27 27 H 1.09003 * 109.46665 * 299.99901 * 12 10 9 28 28 H 1.00898 * 110.99925 * 303.95361 * 13 12 10 29 29 H 1.09003 * 109.51672 * 297.50339 * 16 14 13 30 30 H 1.09005 * 109.52034 * 57.68419 * 16 14 13 31 31 H 1.09000 * 109.50284 * 62.28319 * 17 16 14 32 32 H 1.08994 * 109.50641 * 182.40702 * 17 16 14 33 33 H 1.08996 * 109.46346 * 179.19637 * 18 17 16 34 34 H 1.08998 * 109.46176 * 299.16124 * 18 17 16 35 35 H 1.08999 * 109.47184 * 315.89529 * 20 19 18 36 36 H 1.09002 * 109.47204 * 75.89631 * 20 19 18 37 37 H 1.09004 * 109.47475 * 184.17103 * 21 20 19 38 38 H 1.08996 * 109.47406 * 304.17690 * 21 20 19 39 39 H 0.96700 * 114.00154 * 179.97438 * 22 21 20 40 40 H 1.09007 * 109.42504 * 301.67967 * 23 19 18 41 41 H 1.08998 * 109.49563 * 181.71667 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0001 12 6 1.2440 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 1.4984 -7.2707 -0.0016 15 1 0.5852 -7.1896 0.5880 16 6 1.1453 -7.6609 -1.4396 17 6 0.4699 -9.0350 -1.4361 18 6 1.4067 -10.0570 -0.7880 19 7 1.7138 -9.6392 0.5858 20 6 2.4985 -10.6653 1.2852 21 6 2.4635 -10.3960 2.7909 22 8 1.1231 -10.5310 3.2678 23 6 2.4050 -8.3436 0.6058 24 1 -0.4851 0.8400 -0.0004 25 1 0.3534 -2.3907 -0.0005 26 1 0.6177 -4.9205 -0.8913 27 1 0.6170 -4.9208 0.8887 28 1 2.8334 -5.9120 -0.7829 29 1 0.4645 -6.9213 -1.8609 30 1 2.0547 -7.7035 -2.0391 31 1 -0.4594 -8.9822 -0.8689 32 1 0.2547 -9.3373 -2.4610 33 1 0.9230 -11.0335 -0.7711 34 1 2.3302 -10.1193 -1.3636 35 1 2.0742 -11.6485 1.0819 36 1 3.5303 -10.6353 0.9348 37 1 3.1054 -11.1127 3.3033 38 1 2.8188 -9.3845 2.9875 39 1 1.0257 -10.3742 4.2170 40 1 3.3243 -8.4142 0.0242 41 1 2.6460 -8.0757 1.6345 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384709686.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:27 Heat of formation + Delta-G solvation = -84.440024 kcal Electronic energy + Delta-G solvation = -21021.823168 eV Core-core repulsion = 17743.294594 eV Total energy + Delta-G solvation = -3278.528574 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.49506 -38.14599 -36.91756 -35.22102 -33.85503 -32.75642 -31.20547 -29.79357 -28.82177 -26.15876 -24.37570 -23.98512 -22.00148 -21.38815 -20.05035 -19.12969 -17.86285 -17.56298 -16.65127 -15.74583 -15.40931 -15.12863 -14.70752 -14.53165 -14.38781 -14.20011 -13.84653 -13.69346 -13.42452 -13.03160 -12.91935 -12.36112 -12.33897 -12.03087 -11.75643 -11.50267 -11.31864 -11.20865 -11.04371 -10.91507 -10.54609 -10.44387 -10.32729 -10.20045 -10.06186 -9.49739 -8.44731 -8.34841 -7.98121 -7.91844 -6.39455 -3.80185 3.17868 3.28164 3.35507 3.61698 3.94303 4.13312 4.17141 4.44526 4.75342 4.81668 4.88331 4.99085 5.03642 5.17744 5.22573 5.24531 5.30705 5.37959 5.42363 5.49577 5.61362 5.63596 5.67540 5.83410 5.84580 5.90894 5.96640 6.04361 6.20416 6.26654 6.33545 6.97733 6.99590 7.32798 7.55227 7.57499 7.73149 8.09214 8.64066 9.20412 9.57289 10.08874 10.78418 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.031754 B = 0.003238 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.564726 B = 8645.853869 C = 8979.360325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.441 3.559 11 O -0.584 6.584 12 C 0.053 3.947 13 N -0.665 5.665 14 C 0.093 3.907 15 H 0.085 0.915 16 C -0.154 4.154 17 C -0.111 4.111 18 C 0.057 3.943 19 N -0.530 5.530 20 C 0.057 3.943 21 C 0.080 3.920 22 O -0.559 6.559 23 C 0.068 3.932 24 H 0.271 0.729 25 H 0.392 0.608 26 H 0.043 0.957 27 H 0.086 0.914 28 H 0.348 0.652 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.030 0.970 35 H 0.079 0.921 36 H 0.047 0.953 37 H 0.045 0.955 38 H 0.049 0.951 39 H 0.373 0.627 40 H 0.032 0.968 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.141 -20.591 1.005 20.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.227 3.773 11 O -0.468 6.468 12 C -0.079 4.079 13 N -0.296 5.296 14 C -0.018 4.018 15 H 0.103 0.897 16 C -0.193 4.193 17 C -0.150 4.150 18 C -0.071 4.071 19 N -0.255 5.255 20 C -0.071 4.071 21 C 0.001 3.999 22 O -0.364 6.364 23 C -0.060 4.060 24 H 0.081 0.919 25 H 0.225 0.775 26 H 0.061 0.939 27 H 0.104 0.896 28 H 0.168 0.832 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.048 0.952 35 H 0.097 0.903 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.219 0.781 40 H 0.050 0.950 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.384 -20.472 1.302 20.517 hybrid contribution 0.335 0.896 -0.790 1.240 sum 0.719 -19.577 0.512 19.596 Atomic orbital electron populations 1.69622 1.05930 1.28018 1.50771 1.25261 0.95632 0.99705 0.97400 0.85804 0.79707 0.81170 0.77683 1.19232 1.20801 1.20741 1.19755 0.93391 0.82255 1.47403 0.87898 1.41873 1.09211 1.04606 1.64434 1.19849 0.88385 0.84765 0.84324 1.90517 1.13800 1.87117 1.55395 1.21674 0.94336 0.90744 1.01192 1.60026 1.18670 0.99731 1.51172 1.21531 0.96943 0.88809 0.94500 0.89656 1.22380 1.00898 0.97488 0.98525 1.21501 0.99116 0.94324 1.00036 1.22090 0.98121 0.98598 0.88300 1.61765 1.45864 1.02363 1.15470 1.22095 0.96079 0.95963 0.93000 1.22196 0.83939 0.99677 0.94052 1.86581 1.27620 1.94016 1.28151 1.22048 0.94511 0.87866 1.01607 0.91945 0.77451 0.93876 0.89570 0.83220 0.91647 0.92101 0.90926 0.91685 0.90946 0.95216 0.90299 0.93459 0.93728 0.93242 0.78069 0.94989 0.89956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.80 13.05 55.50 0.72 -24.08 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.24 29.55 -169.99 -5.02 16.21 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 8 H 0.10 3.06 7.16 -52.48 -0.38 2.68 16 9 N -0.56 -14.55 5.29 -10.96 -0.06 -14.61 16 10 C 0.44 10.63 7.82 -10.99 -0.09 10.54 16 11 O -0.58 -16.12 15.78 5.55 0.09 -16.03 16 12 C 0.05 0.97 5.97 -4.98 -0.03 0.94 16 13 N -0.66 -11.12 5.87 -107.91 -0.63 -11.76 16 14 C 0.09 1.26 2.63 -67.63 -0.18 1.08 16 15 H 0.09 1.23 7.80 -51.93 -0.41 0.82 16 16 C -0.15 -1.82 5.25 -26.61 -0.14 -1.96 16 17 C -0.11 -1.14 6.09 -26.65 -0.16 -1.30 16 18 C 0.06 0.57 5.45 -3.83 -0.02 0.55 16 19 N -0.53 -6.03 4.55 -234.67 -1.07 -7.10 16 20 C 0.06 0.55 5.37 -3.83 -0.02 0.53 16 21 C 0.08 0.72 7.19 37.16 0.27 0.99 16 22 O -0.56 -5.79 13.59 -35.23 -0.48 -6.27 16 23 C 0.07 0.85 4.91 -3.83 -0.02 0.84 16 24 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 25 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 26 H 0.04 0.71 7.49 -51.93 -0.39 0.33 16 27 H 0.09 1.48 8.06 -51.93 -0.42 1.06 16 28 H 0.35 6.02 8.15 -39.29 -0.32 5.70 16 29 H 0.06 0.80 7.53 -51.93 -0.39 0.41 16 30 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.66 7.96 -51.93 -0.41 0.25 16 34 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.08 0.72 7.87 -51.93 -0.41 0.31 16 36 H 0.05 0.41 8.06 -51.93 -0.42 -0.01 16 37 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.05 0.48 6.50 -51.93 -0.34 0.14 16 39 H 0.37 2.28 9.12 45.56 0.42 2.69 16 40 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 1.10 6.42 -51.93 -0.33 0.77 16 LS Contribution 331.99 15.07 5.00 5.00 Total: -1.00 -32.49 331.99 -7.86 -40.36 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -5.79 Total: 14.15 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -0.63 Total: 4.11 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: -1.03 Total: -57.54 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.39 Total: -22.30 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.49 -7.86 -40.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384709686.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.082 kcal (2) G-P(sol) polarization free energy of solvation -32.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds