Wall clock time and date at job start Mon Mar 30 2020 05:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86804 * 119.99612 * 2 1 4 4 H 1.48499 * 109.46937 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47202 * 299.99798 * 3 2 1 6 6 H 1.48498 * 109.47283 * 60.00060 * 3 2 1 7 7 C 1.38948 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99862 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00244 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00294 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99669 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00138 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47038 * 179.97438 * 12 10 9 14 14 C 1.46894 * 110.99853 * 179.97438 * 13 12 10 15 15 H 1.08998 * 109.50868 * 325.00330 * 14 13 12 16 16 C 1.53123 * 109.50574 * 85.07956 * 14 13 12 17 17 C 1.53111 * 109.16651 * 177.59613 * 16 14 13 18 18 C 1.53041 * 109.27760 * 302.34741 * 17 16 14 19 19 N 1.46846 * 109.52694 * 59.17664 * 18 17 16 20 20 C 1.46896 * 111.00228 * 174.16272 * 19 18 17 21 21 C 1.53001 * 109.47141 * 195.88925 * 20 19 18 22 22 O 1.42905 * 109.46795 * 64.17235 * 21 20 19 23 23 C 1.46854 * 111.23161 * 298.28349 * 19 18 17 24 24 H 0.97001 * 120.00409 * 0.02562 * 1 2 3 25 25 H 0.97005 * 119.99862 * 0.02562 * 9 7 2 26 26 H 1.08991 * 109.47076 * 59.99731 * 12 10 9 27 27 H 1.09003 * 109.46665 * 299.99901 * 12 10 9 28 28 H 1.00898 * 110.99925 * 303.95361 * 13 12 10 29 29 H 1.09003 * 109.51672 * 297.50339 * 16 14 13 30 30 H 1.09005 * 109.52034 * 57.68419 * 16 14 13 31 31 H 1.09000 * 109.50284 * 62.28319 * 17 16 14 32 32 H 1.08994 * 109.50641 * 182.40702 * 17 16 14 33 33 H 1.08996 * 109.46346 * 179.19637 * 18 17 16 34 34 H 1.08998 * 109.46176 * 299.16124 * 18 17 16 35 35 H 1.08999 * 109.47184 * 315.89529 * 20 19 18 36 36 H 1.09002 * 109.47204 * 75.89631 * 20 19 18 37 37 H 1.09004 * 109.47475 * 184.17103 * 21 20 19 38 38 H 1.08996 * 109.47406 * 304.17690 * 21 20 19 39 39 H 0.96700 * 114.00154 * 179.97438 * 22 21 20 40 40 H 1.09007 * 109.42504 * 301.67967 * 23 19 18 41 41 H 1.08998 * 109.49563 * 181.71667 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0001 12 6 1.2440 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 1.4984 -7.2707 -0.0016 15 1 0.5852 -7.1896 0.5880 16 6 1.1453 -7.6609 -1.4396 17 6 0.4699 -9.0350 -1.4361 18 6 1.4067 -10.0570 -0.7880 19 7 1.7138 -9.6392 0.5858 20 6 2.4985 -10.6653 1.2852 21 6 2.4635 -10.3960 2.7909 22 8 1.1231 -10.5310 3.2678 23 6 2.4050 -8.3436 0.6058 24 1 -0.4851 0.8400 -0.0004 25 1 0.3534 -2.3907 -0.0005 26 1 0.6177 -4.9205 -0.8913 27 1 0.6170 -4.9208 0.8887 28 1 2.8334 -5.9120 -0.7829 29 1 0.4645 -6.9213 -1.8609 30 1 2.0547 -7.7035 -2.0391 31 1 -0.4594 -8.9822 -0.8689 32 1 0.2547 -9.3373 -2.4610 33 1 0.9230 -11.0335 -0.7711 34 1 2.3302 -10.1193 -1.3636 35 1 2.0742 -11.6485 1.0819 36 1 3.5303 -10.6353 0.9348 37 1 3.1054 -11.1127 3.3033 38 1 2.8188 -9.3845 2.9875 39 1 1.0257 -10.3742 4.2170 40 1 3.3243 -8.4142 0.0242 41 1 2.6460 -8.0757 1.6345 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384709686.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:27 Heat of formation + Delta-G solvation = -112.588898 kcal Electronic energy + Delta-G solvation = -21023.043795 eV Core-core repulsion = 17743.294594 eV Total energy + Delta-G solvation = -3279.749201 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.57653 -39.88810 -37.77941 -36.44035 -35.80662 -33.72520 -33.25768 -30.97994 -29.62923 -27.83884 -25.75907 -25.20481 -23.00982 -22.21404 -21.32589 -20.71975 -19.89380 -18.31316 -17.96608 -17.16752 -16.72759 -16.37254 -16.24158 -15.92050 -15.44515 -15.40157 -15.20793 -14.83826 -14.71265 -14.24110 -13.92515 -13.67554 -13.53145 -13.32250 -13.17706 -12.99933 -12.87903 -12.41047 -12.28879 -12.11547 -12.09906 -11.79242 -11.54384 -11.49564 -11.33368 -10.77946 -10.36126 -10.02199 -9.33118 -9.18333 -8.47064 -5.96088 1.36641 1.41888 1.56351 2.03842 2.28403 2.65046 3.14400 3.20098 3.48927 3.57281 3.85520 3.85923 4.04041 4.19759 4.28742 4.32001 4.33563 4.43375 4.47257 4.52823 4.58396 4.63672 4.65593 4.77982 4.82174 4.86927 4.97700 5.01810 5.08374 5.22337 5.36332 5.40815 5.87518 6.05915 6.15360 6.22096 6.40134 6.59326 7.01143 7.11902 7.55152 8.10283 8.70609 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.031754 B = 0.003238 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.564726 B = 8645.853869 C = 8979.360325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.994 3.006 4 H -0.273 1.273 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.334 4.334 8 H 0.079 0.921 9 N -0.572 5.572 10 C 0.438 3.562 11 O -0.623 6.623 12 C 0.069 3.931 13 N -0.676 5.676 14 C 0.097 3.903 15 H 0.079 0.921 16 C -0.149 4.149 17 C -0.106 4.106 18 C 0.055 3.945 19 N -0.540 5.540 20 C 0.053 3.947 21 C 0.079 3.921 22 O -0.582 6.582 23 C 0.076 3.924 24 H 0.278 0.722 25 H 0.396 0.604 26 H 0.066 0.934 27 H 0.100 0.900 28 H 0.344 0.656 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.034 0.966 35 H 0.086 0.914 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.039 0.961 39 H 0.389 0.611 40 H 0.029 0.971 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.336 -21.400 0.781 21.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.818 3.182 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.464 4.464 8 H 0.097 0.903 9 N -0.210 5.210 10 C 0.226 3.774 11 O -0.510 6.510 12 C -0.063 4.063 13 N -0.308 5.308 14 C -0.013 4.013 15 H 0.097 0.903 16 C -0.188 4.188 17 C -0.145 4.145 18 C -0.072 4.072 19 N -0.265 5.265 20 C -0.075 4.075 21 C 0.001 3.999 22 O -0.389 6.389 23 C -0.053 4.053 24 H 0.087 0.913 25 H 0.230 0.770 26 H 0.083 0.917 27 H 0.118 0.882 28 H 0.163 0.837 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.052 0.948 35 H 0.104 0.896 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.057 0.943 39 H 0.238 0.762 40 H 0.047 0.953 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.128 -21.306 1.092 21.335 hybrid contribution 0.475 1.081 -0.692 1.369 sum 0.346 -20.225 0.400 20.232 Atomic orbital electron populations 1.69680 1.06857 1.29279 1.50311 1.26059 0.96555 1.02449 0.96219 0.84856 0.78019 0.77006 0.78356 1.19778 1.19531 1.19566 1.19715 0.92715 0.84019 1.49937 0.90315 1.41935 1.09336 1.04712 1.64981 1.20849 0.88240 0.86129 0.82228 1.90484 1.15822 1.87968 1.56693 1.21508 0.93968 0.88011 1.02834 1.60020 1.18884 1.00597 1.51264 1.21530 0.96502 0.87488 0.95795 0.90306 1.22309 1.01007 0.98504 0.96973 1.21482 0.98609 0.93269 1.01115 1.22153 0.98355 0.99061 0.87636 1.61781 1.46106 1.02199 1.16436 1.22206 0.96459 0.95654 0.93191 1.22247 0.83851 0.99779 0.94046 1.86524 1.28394 1.94105 1.29855 1.21882 0.94235 0.88489 1.00673 0.91265 0.76977 0.91665 0.88164 0.83726 0.91924 0.92061 0.91474 0.89860 0.89668 0.94817 0.89585 0.92531 0.91453 0.94262 0.76229 0.95314 0.91135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.13 13.05 21.66 0.28 -49.85 16 2 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 3 Si 0.99 43.27 29.55 68.60 2.03 45.30 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 5 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 6 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.33 -19.27 9.68 84.04 0.81 -18.46 16 8 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 9 N -0.57 -29.96 5.29 -306.98 -1.62 -31.58 16 10 C 0.44 21.37 7.82 87.66 0.69 22.05 16 11 O -0.62 -35.23 15.78 -3.07 -0.05 -35.28 16 12 C 0.07 2.48 5.97 85.56 0.51 2.99 16 13 N -0.68 -22.39 5.87 -495.33 -2.91 -25.30 16 14 C 0.10 2.54 2.63 44.97 0.12 2.66 16 15 H 0.08 2.18 7.80 -2.39 -0.02 2.16 16 16 C -0.15 -3.29 5.25 30.67 0.16 -3.13 16 17 C -0.11 -1.95 6.09 30.64 0.19 -1.77 16 18 C 0.06 1.00 5.45 86.33 0.47 1.47 16 19 N -0.54 -11.51 4.55 -896.35 -4.08 -15.59 16 20 C 0.05 0.92 5.37 86.30 0.46 1.39 16 21 C 0.08 1.33 7.19 71.98 0.52 1.84 16 22 O -0.58 -11.30 13.59 -148.98 -2.03 -13.32 16 23 C 0.08 1.85 4.91 86.32 0.42 2.27 16 24 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 25 H 0.40 19.71 7.90 -92.70 -0.73 18.97 16 26 H 0.07 2.07 7.49 -2.39 -0.02 2.05 16 27 H 0.10 3.34 8.06 -2.39 -0.02 3.32 16 28 H 0.34 11.88 8.15 -89.70 -0.73 11.15 16 29 H 0.06 1.42 7.53 -2.39 -0.02 1.40 16 30 H 0.06 1.36 8.10 -2.38 -0.02 1.34 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.31 16 32 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.08 1.34 7.96 -2.39 -0.02 1.32 16 34 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.09 1.39 7.87 -2.39 -0.02 1.37 16 36 H 0.06 0.88 8.06 -2.39 -0.02 0.87 16 37 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 38 H 0.04 0.73 6.50 -2.39 -0.02 0.72 16 39 H 0.39 4.31 9.12 -74.06 -0.68 3.64 16 40 H 0.03 0.71 8.14 -2.38 -0.02 0.69 16 41 H 0.07 1.88 6.42 -2.39 -0.02 1.86 16 Total: -1.00 -69.34 331.99 -4.64 -73.98 By element: Atomic # 1 Polarization: 41.64 SS G_CDS: -1.09 Total: 40.55 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: 4.82 Total: 11.08 kcal Atomic # 7 Polarization: -113.99 SS G_CDS: -8.33 Total: -122.32 kcal Atomic # 8 Polarization: -46.53 SS G_CDS: -2.07 Total: -48.60 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -69.34 -4.64 -73.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384709686.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.607 kcal (2) G-P(sol) polarization free energy of solvation -69.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds