Wall clock time and date at job start Mon Mar 30 2020 05:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46977 * 2 1 4 4 C 1.52997 * 109.47127 * 299.99541 * 3 2 1 5 5 C 1.53000 * 109.47060 * 300.00449 * 4 3 2 6 6 O 1.42900 * 109.47041 * 299.99420 * 5 4 3 7 7 C 1.53001 * 109.46886 * 180.02562 * 5 4 3 8 8 N 1.46896 * 109.47098 * 185.00074 * 7 5 4 9 9 C 1.46903 * 111.00046 * 179.97438 * 8 7 5 10 10 C 1.53006 * 109.47219 * 179.97438 * 9 8 7 11 11 O 1.42904 * 109.47030 * 64.99767 * 10 9 8 12 12 C 1.42894 * 113.99811 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47236 * 180.02562 * 12 11 10 14 14 H 1.08012 * 119.99792 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00631 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99782 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00377 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47347 * 60.00277 * 17 15 13 19 19 H 1.48503 * 109.47214 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47082 * 299.99982 * 17 15 13 21 21 C 1.52996 * 109.47328 * 60.00126 * 5 4 3 22 22 C 1.52997 * 109.47415 * 239.99858 * 2 1 3 23 23 H 1.08992 * 109.47063 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47407 * 300.00489 * 1 2 3 25 25 H 1.09004 * 109.46733 * 59.99806 * 1 2 3 26 26 H 1.09000 * 109.46986 * 119.99740 * 2 1 3 27 27 H 1.08998 * 109.46505 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.46884 * 60.00293 * 3 2 1 29 29 H 1.09002 * 109.47153 * 180.02562 * 4 3 2 30 30 H 1.09001 * 109.46832 * 60.00321 * 4 3 2 31 31 H 0.96702 * 114.00113 * 179.97438 * 6 5 4 32 32 H 1.09008 * 109.46864 * 304.99696 * 7 5 4 33 33 H 1.09000 * 109.47679 * 64.99728 * 7 5 4 34 34 H 1.00905 * 111.00162 * 56.04172 * 8 7 5 35 35 H 1.08991 * 109.47170 * 299.99552 * 9 8 7 36 36 H 1.09001 * 109.46877 * 59.99944 * 9 8 7 37 37 H 1.08996 * 109.47412 * 185.00329 * 10 9 8 38 38 H 1.09006 * 109.47239 * 305.00212 * 10 9 8 39 39 H 1.08995 * 109.47365 * 300.00022 * 12 11 10 40 40 H 1.09008 * 109.47019 * 60.00406 * 12 11 10 41 41 H 0.97003 * 120.00356 * 180.02562 * 16 15 13 42 42 H 1.08992 * 109.47554 * 59.99639 * 21 5 4 43 43 H 1.09004 * 109.47108 * 179.97438 * 21 5 4 44 44 H 1.09002 * 109.47045 * 300.00068 * 22 2 1 45 45 H 1.09001 * 109.47375 * 179.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5301 2.1638 -1.2493 5 6 2.0401 1.4424 -2.4985 6 8 3.4691 1.4425 -2.4984 7 6 1.5307 2.1640 -3.7477 8 7 1.9193 1.4054 -4.9441 9 6 1.4454 2.0696 -6.1657 10 6 1.8688 1.2521 -7.3878 11 8 1.2080 -0.0147 -7.3656 12 6 1.5353 -0.8603 -8.4700 13 6 0.7858 -2.1618 -8.3457 14 1 0.1252 -2.3265 -7.5072 15 6 0.9426 -3.1419 -9.3026 16 7 1.7467 -2.9411 -10.3238 17 14 0.0130 -4.7547 -9.1488 18 1 -1.4475 -4.4861 -9.1465 19 1 0.3533 -5.6336 -10.2965 20 1 0.3947 -5.4271 -7.8809 21 6 1.5301 0.0000 -2.4984 22 6 2.0401 -0.7213 -1.2492 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 0.8900 29 1 1.8938 3.1913 -1.2495 30 1 0.4401 2.1638 -1.2493 31 1 3.8625 1.0004 -3.2632 32 1 0.4443 2.2426 -3.7043 33 1 1.9656 3.1624 -3.7935 34 1 1.5821 0.4555 -4.8953 35 1 0.3586 2.1472 -6.1388 36 1 1.8795 3.0675 -6.2283 37 1 1.5955 1.7887 -8.2963 38 1 2.9479 1.0994 -7.3667 39 1 1.2547 -0.3674 -9.4008 40 1 2.6075 -1.0569 -8.4718 41 1 1.8567 -3.6305 -10.9974 42 1 0.4402 -0.0001 -2.4985 43 1 1.8931 -0.5138 -3.3887 44 1 1.6768 -1.7489 -1.2492 45 1 3.1301 -0.7209 -1.2494 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385196167.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:23 Heat of formation + Delta-G solvation = -127.248532 kcal Electronic energy + Delta-G solvation = -21759.305545 eV Core-core repulsion = 18582.460998 eV Total energy + Delta-G solvation = -3176.844547 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.04103 -37.22512 -36.06939 -34.69785 -32.72119 -31.33299 -30.87761 -28.98494 -27.24098 -26.42617 -24.25811 -22.85190 -22.35135 -21.26991 -20.79389 -18.86214 -16.63842 -16.22670 -16.07934 -15.88856 -15.37358 -15.14166 -14.75060 -14.54272 -14.32836 -13.93854 -13.63284 -13.39438 -13.13977 -12.93279 -12.33591 -12.16368 -12.05296 -11.85830 -11.74942 -11.55833 -11.50709 -11.25259 -10.99539 -10.84140 -10.76954 -10.64734 -10.53268 -10.41706 -10.11241 -9.88559 -9.58342 -9.14473 -8.84884 -8.30371 -8.19744 -6.12800 -4.15017 3.30207 3.33294 3.36665 4.18005 4.29156 4.32745 4.61121 4.68246 4.74720 4.90862 4.99465 5.05725 5.15121 5.23601 5.26910 5.38637 5.46289 5.47689 5.50975 5.59296 5.64684 5.69454 5.73950 5.79691 5.86448 5.91333 5.97366 6.04496 6.13997 6.17289 6.20350 6.23590 6.30570 6.35562 6.43109 7.08286 7.12388 7.41311 7.56109 7.76146 7.84763 8.12877 8.54757 8.97455 9.49953 10.98648 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.019825 B = 0.003898 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.016799 B = 7181.214829 C = 8153.068229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.092 4.092 3 C -0.108 4.108 4 C -0.106 4.106 5 C 0.144 3.856 6 O -0.556 6.556 7 C 0.030 3.970 8 N -0.689 5.689 9 C 0.067 3.933 10 C 0.061 3.939 11 O -0.400 6.400 12 C 0.198 3.802 13 C -0.516 4.516 14 H 0.065 0.935 15 C 0.057 3.943 16 N -0.898 5.898 17 Si 0.908 3.092 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.275 1.275 21 C -0.153 4.153 22 C -0.108 4.108 23 H 0.052 0.948 24 H 0.050 0.950 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.383 0.617 32 H 0.033 0.967 33 H 0.075 0.925 34 H 0.355 0.645 35 H 0.034 0.966 36 H 0.075 0.925 37 H 0.041 0.959 38 H 0.047 0.953 39 H 0.004 0.996 40 H 0.006 0.994 41 H 0.265 0.735 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.059 0.941 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.206 9.753 18.472 20.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.111 4.111 3 C -0.145 4.145 4 C -0.143 4.143 5 C 0.102 3.898 6 O -0.362 6.362 7 C -0.100 4.100 8 N -0.324 5.324 9 C -0.062 4.062 10 C -0.016 4.016 11 O -0.320 6.320 12 C 0.124 3.876 13 C -0.555 4.555 14 H 0.083 0.917 15 C -0.144 4.144 16 N -0.537 5.537 17 Si 0.735 3.265 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.200 1.200 21 C -0.190 4.190 22 C -0.145 4.145 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.232 0.768 32 H 0.051 0.949 33 H 0.094 0.906 34 H 0.176 0.824 35 H 0.052 0.948 36 H 0.093 0.907 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.022 0.978 40 H 0.024 0.976 41 H 0.074 0.926 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.078 0.922 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.263 10.200 18.952 21.524 hybrid contribution -1.182 -1.243 -0.928 1.950 sum -0.919 8.957 18.024 20.148 Atomic orbital electron populations 1.21958 0.95658 1.01650 1.01677 1.21103 0.95576 0.96194 0.98186 1.21451 1.01485 0.94875 0.96733 1.21522 1.00244 0.99148 0.93422 1.21059 0.81682 0.93744 0.93270 1.86389 1.18367 1.81540 1.49946 1.22681 0.98085 0.98461 0.90761 1.60504 1.64046 1.06942 1.00888 1.21940 0.97863 0.97050 0.89390 1.22303 0.96817 0.86970 0.95551 1.87779 1.68590 1.25633 1.50028 1.20168 0.95515 0.88542 0.83421 1.21005 1.26622 0.98744 1.09092 0.91716 1.24939 0.95576 0.98975 0.94918 1.69953 1.37052 1.34762 1.11941 0.86406 0.80073 0.82402 0.77650 1.20055 1.21119 1.19993 1.22286 1.01456 0.96193 0.99111 1.21445 1.01195 0.98327 0.93570 0.92850 0.93085 0.92125 0.91582 0.91076 0.92498 0.91573 0.90806 0.76807 0.94861 0.90623 0.82363 0.94771 0.90680 0.94122 0.93511 0.97840 0.97605 0.92565 0.91165 0.90606 0.92184 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.50 37.16 0.32 -1.02 16 2 C -0.09 -0.86 3.19 -90.62 -0.29 -1.15 16 3 C -0.11 -1.02 5.30 -26.73 -0.14 -1.16 16 4 C -0.11 -1.04 4.67 -26.73 -0.12 -1.16 16 5 C 0.14 1.59 0.79 -90.62 -0.07 1.52 16 6 O -0.56 -6.78 11.63 -35.23 -0.41 -7.19 16 7 C 0.03 0.36 4.93 -3.83 -0.02 0.34 16 8 N -0.69 -9.72 6.02 -113.78 -0.69 -10.40 16 9 C 0.07 0.99 6.11 -3.82 -0.02 0.97 16 10 C 0.06 1.13 6.28 37.16 0.23 1.36 16 11 O -0.40 -9.40 9.85 -35.23 -0.35 -9.75 16 12 C 0.20 5.39 5.69 36.00 0.20 5.60 16 13 C -0.52 -15.08 9.43 -34.44 -0.32 -15.40 16 14 H 0.06 1.86 7.81 -52.48 -0.41 1.45 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 17 Si 0.91 21.70 29.54 -169.99 -5.02 16.68 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 C -0.15 -1.74 4.19 -26.73 -0.11 -1.85 16 22 C -0.11 -1.14 5.31 -26.73 -0.14 -1.28 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.55 4.81 -51.93 -0.25 0.30 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.76 7.68 -51.93 -0.40 0.36 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.67 6.43 -51.93 -0.33 0.33 16 31 H 0.38 4.43 8.66 45.56 0.39 4.83 16 32 H 0.03 0.39 8.14 -51.92 -0.42 -0.03 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.36 5.58 6.17 -39.29 -0.24 5.33 16 35 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.00 0.11 8.14 -51.93 -0.42 -0.32 16 40 H 0.01 0.17 8.14 -51.92 -0.42 -0.25 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.07 0.79 6.43 -51.93 -0.33 0.46 16 43 H 0.08 0.97 6.51 -51.93 -0.34 0.63 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.07 0.77 7.68 -51.93 -0.40 0.37 16 LS Contribution 345.97 15.07 5.21 5.21 Total: -1.00 -30.09 345.97 -8.47 -38.56 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -7.37 Total: 4.68 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: -0.59 Total: -11.70 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: 0.05 Total: -36.49 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -0.76 Total: -16.94 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.09 -8.47 -38.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385196167.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.692 kcal (2) G-P(sol) polarization free energy of solvation -30.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds