Wall clock time and date at job start Mon Mar 30 2020 05:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46977 * 2 1 4 4 C 1.52997 * 109.47127 * 299.99541 * 3 2 1 5 5 C 1.53000 * 109.47060 * 300.00449 * 4 3 2 6 6 O 1.42900 * 109.47041 * 299.99420 * 5 4 3 7 7 C 1.53001 * 109.46886 * 180.02562 * 5 4 3 8 8 N 1.46896 * 109.47098 * 185.00074 * 7 5 4 9 9 C 1.46903 * 111.00046 * 179.97438 * 8 7 5 10 10 C 1.53006 * 109.47219 * 179.97438 * 9 8 7 11 11 O 1.42904 * 109.47030 * 64.99767 * 10 9 8 12 12 C 1.42894 * 113.99811 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47236 * 180.02562 * 12 11 10 14 14 H 1.08012 * 119.99792 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00631 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99782 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00377 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47347 * 60.00277 * 17 15 13 19 19 H 1.48503 * 109.47214 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47082 * 299.99982 * 17 15 13 21 21 C 1.52996 * 109.47328 * 60.00126 * 5 4 3 22 22 C 1.52997 * 109.47415 * 239.99858 * 2 1 3 23 23 H 1.08992 * 109.47063 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47407 * 300.00489 * 1 2 3 25 25 H 1.09004 * 109.46733 * 59.99806 * 1 2 3 26 26 H 1.09000 * 109.46986 * 119.99740 * 2 1 3 27 27 H 1.08998 * 109.46505 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.46884 * 60.00293 * 3 2 1 29 29 H 1.09002 * 109.47153 * 180.02562 * 4 3 2 30 30 H 1.09001 * 109.46832 * 60.00321 * 4 3 2 31 31 H 0.96702 * 114.00113 * 179.97438 * 6 5 4 32 32 H 1.09008 * 109.46864 * 304.99696 * 7 5 4 33 33 H 1.09000 * 109.47679 * 64.99728 * 7 5 4 34 34 H 1.00905 * 111.00162 * 56.04172 * 8 7 5 35 35 H 1.08991 * 109.47170 * 299.99552 * 9 8 7 36 36 H 1.09001 * 109.46877 * 59.99944 * 9 8 7 37 37 H 1.08996 * 109.47412 * 185.00329 * 10 9 8 38 38 H 1.09006 * 109.47239 * 305.00212 * 10 9 8 39 39 H 1.08995 * 109.47365 * 300.00022 * 12 11 10 40 40 H 1.09008 * 109.47019 * 60.00406 * 12 11 10 41 41 H 0.97003 * 120.00356 * 180.02562 * 16 15 13 42 42 H 1.08992 * 109.47554 * 59.99639 * 21 5 4 43 43 H 1.09004 * 109.47108 * 179.97438 * 21 5 4 44 44 H 1.09002 * 109.47045 * 300.00068 * 22 2 1 45 45 H 1.09001 * 109.47375 * 179.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5301 2.1638 -1.2493 5 6 2.0401 1.4424 -2.4985 6 8 3.4691 1.4425 -2.4984 7 6 1.5307 2.1640 -3.7477 8 7 1.9193 1.4054 -4.9441 9 6 1.4454 2.0696 -6.1657 10 6 1.8688 1.2521 -7.3878 11 8 1.2080 -0.0147 -7.3656 12 6 1.5353 -0.8603 -8.4700 13 6 0.7858 -2.1618 -8.3457 14 1 0.1252 -2.3265 -7.5072 15 6 0.9426 -3.1419 -9.3026 16 7 1.7467 -2.9411 -10.3238 17 14 0.0130 -4.7547 -9.1488 18 1 -1.4475 -4.4861 -9.1465 19 1 0.3533 -5.6336 -10.2965 20 1 0.3947 -5.4271 -7.8809 21 6 1.5301 0.0000 -2.4984 22 6 2.0401 -0.7213 -1.2492 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 0.8900 29 1 1.8938 3.1913 -1.2495 30 1 0.4401 2.1638 -1.2493 31 1 3.8625 1.0004 -3.2632 32 1 0.4443 2.2426 -3.7043 33 1 1.9656 3.1624 -3.7935 34 1 1.5821 0.4555 -4.8953 35 1 0.3586 2.1472 -6.1388 36 1 1.8795 3.0675 -6.2283 37 1 1.5955 1.7887 -8.2963 38 1 2.9479 1.0994 -7.3667 39 1 1.2547 -0.3674 -9.4008 40 1 2.6075 -1.0569 -8.4718 41 1 1.8567 -3.6305 -10.9974 42 1 0.4402 -0.0001 -2.4985 43 1 1.8931 -0.5138 -3.3887 44 1 1.6768 -1.7489 -1.2492 45 1 3.1301 -0.7209 -1.2494 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385196167.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:23 Heat of formation + Delta-G solvation = -148.278557 kcal Electronic energy + Delta-G solvation = -21760.217475 eV Core-core repulsion = 18582.460998 eV Total energy + Delta-G solvation = -3177.756477 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.92220 -38.85239 -37.15490 -35.89563 -34.84207 -32.32938 -31.76519 -30.33213 -28.91898 -27.59125 -25.23935 -24.53961 -23.73858 -22.55640 -21.68869 -19.68546 -18.66191 -17.59749 -17.32557 -16.94033 -16.85229 -16.50872 -16.20160 -15.63168 -15.49026 -15.24834 -14.98220 -14.41977 -14.37608 -13.88468 -13.78441 -13.41836 -13.16143 -13.02282 -12.90262 -12.76965 -12.63752 -12.55396 -12.49474 -12.38427 -12.27763 -11.95827 -11.72142 -11.35244 -11.29981 -11.22316 -10.88448 -10.78678 -10.50833 -10.24352 -9.42336 -8.32624 -6.45334 1.39697 1.44130 1.52566 2.33867 3.01446 3.10943 3.20756 3.39680 3.73685 3.83526 3.89433 4.13537 4.18500 4.25963 4.29482 4.37715 4.44901 4.52817 4.57621 4.63256 4.68935 4.72651 4.79063 4.83516 4.87116 4.93681 4.95974 4.97831 5.06954 5.13423 5.17321 5.17434 5.31537 5.41233 5.44298 5.51209 5.53569 5.64572 5.94630 6.00839 6.33916 6.51897 6.80149 6.90897 7.26710 8.79539 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.019825 B = 0.003898 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.016799 B = 7181.214829 C = 8153.068229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.090 4.090 3 C -0.105 4.105 4 C -0.105 4.105 5 C 0.146 3.854 6 O -0.564 6.564 7 C 0.034 3.966 8 N -0.694 5.694 9 C 0.076 3.924 10 C 0.054 3.946 11 O -0.408 6.408 12 C 0.212 3.788 13 C -0.549 4.549 14 H 0.063 0.937 15 C 0.007 3.993 16 N -0.931 5.931 17 Si 0.982 3.018 18 H -0.265 1.265 19 H -0.276 1.276 20 H -0.265 1.265 21 C -0.149 4.149 22 C -0.107 4.107 23 H 0.051 0.949 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.383 0.617 32 H 0.039 0.961 33 H 0.081 0.919 34 H 0.345 0.655 35 H 0.033 0.967 36 H 0.103 0.897 37 H 0.048 0.952 38 H 0.044 0.956 39 H -0.016 1.016 40 H -0.015 1.015 41 H 0.271 0.729 42 H 0.071 0.929 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.233 9.828 19.813 22.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.109 4.109 3 C -0.142 4.142 4 C -0.143 4.143 5 C 0.105 3.895 6 O -0.371 6.371 7 C -0.096 4.096 8 N -0.327 5.327 9 C -0.053 4.053 10 C -0.023 4.023 11 O -0.328 6.328 12 C 0.137 3.863 13 C -0.586 4.586 14 H 0.081 0.919 15 C -0.191 4.191 16 N -0.570 5.570 17 Si 0.805 3.195 18 H -0.190 1.190 19 H -0.201 1.201 20 H -0.190 1.190 21 C -0.187 4.187 22 C -0.145 4.145 23 H 0.070 0.930 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.232 0.768 32 H 0.058 0.942 33 H 0.100 0.900 34 H 0.164 0.836 35 H 0.052 0.948 36 H 0.121 0.879 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.002 0.998 40 H 0.003 0.997 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.757 10.308 20.309 22.788 hybrid contribution -0.807 -1.185 -1.344 1.965 sum -1.565 9.124 18.965 21.104 Atomic orbital electron populations 1.21940 0.94949 1.01755 1.02113 1.21095 0.96114 0.96072 0.97573 1.21424 1.00620 0.94978 0.97216 1.21555 1.00906 0.99078 0.92729 1.21116 0.81138 0.93575 0.93696 1.86387 1.19066 1.81541 1.50077 1.22711 0.98497 0.98370 0.89989 1.60522 1.64140 1.06571 1.01512 1.21897 0.97969 0.97386 0.88069 1.22610 0.96508 0.85245 0.97969 1.87743 1.69235 1.27412 1.48456 1.19781 0.93934 0.88835 0.83759 1.21357 1.27485 1.00087 1.09692 0.91895 1.25949 0.96198 1.02876 0.94110 1.70066 1.38066 1.36268 1.12622 0.85253 0.78820 0.77271 0.78196 1.18995 1.20064 1.18961 1.22236 1.01439 0.96413 0.98642 1.21431 1.00588 0.98422 0.94023 0.92971 0.91805 0.92487 0.90917 0.92447 0.90889 0.91272 0.89671 0.76780 0.94243 0.90041 0.83564 0.94850 0.87892 0.93414 0.93734 0.99815 0.99718 0.92039 0.91015 0.92554 0.92354 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 8.50 71.98 0.61 -1.74 16 2 C -0.09 -1.55 3.19 -10.79 -0.03 -1.59 16 3 C -0.10 -1.80 5.30 30.60 0.16 -1.64 16 4 C -0.11 -1.87 4.67 30.59 0.14 -1.73 16 5 C 0.15 3.09 0.79 -10.79 -0.01 3.09 16 6 O -0.56 -13.47 11.63 -148.98 -1.73 -15.20 16 7 C 0.03 0.75 4.93 86.30 0.43 1.18 16 8 N -0.69 -19.12 6.02 -513.88 -3.09 -22.21 16 9 C 0.08 2.16 6.11 86.30 0.53 2.69 16 10 C 0.05 1.98 6.28 71.98 0.45 2.43 16 11 O -0.41 -19.54 9.85 -148.98 -1.47 -21.01 16 12 C 0.21 11.91 5.69 71.24 0.41 12.31 16 13 C -0.55 -32.51 9.43 25.60 0.24 -32.26 16 14 H 0.06 3.65 7.81 -2.90 -0.02 3.63 16 15 C 0.01 0.42 5.46 84.65 0.46 0.88 16 16 N -0.93 -56.07 13.29 21.45 0.28 -55.78 16 17 Si 0.98 44.10 29.54 68.60 2.03 46.13 16 18 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 19 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 20 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 21 C -0.15 -3.35 4.19 30.59 0.13 -3.22 16 22 C -0.11 -2.22 5.31 30.59 0.16 -2.06 16 23 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.06 0.93 4.81 -2.39 -0.01 0.92 16 26 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.06 1.15 7.68 -2.39 -0.02 1.13 16 28 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.08 1.34 6.43 -2.39 -0.02 1.32 16 31 H 0.38 8.90 8.66 -74.06 -0.64 8.26 16 32 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.34 10.87 6.17 -89.69 -0.55 10.32 16 35 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 39 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 40 H -0.01 -0.88 8.14 -2.38 -0.02 -0.90 16 41 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 42 H 0.07 1.57 6.43 -2.39 -0.02 1.56 16 43 H 0.06 1.48 6.51 -2.38 -0.02 1.46 16 44 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.06 1.32 7.68 -2.39 -0.02 1.31 16 Total: -1.00 -64.03 345.97 -0.54 -64.57 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: -0.23 Total: 25.15 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: 3.68 Total: -21.65 kcal Atomic # 7 Polarization: -75.18 SS G_CDS: -2.81 Total: -77.99 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: -3.20 Total: -36.21 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -64.03 -0.54 -64.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385196167.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.709 kcal (2) G-P(sol) polarization free energy of solvation -64.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds