Wall clock time and date at job start Mon Mar 30 2020 05:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.50535 * 2 1 4 4 C 1.53100 * 109.50501 * 120.08592 * 2 1 3 5 5 N 1.47008 * 109.25851 * 63.08915 * 4 2 1 6 6 C 1.47018 * 110.75709 * 58.61432 * 5 4 2 7 7 C 1.53093 * 109.25711 * 301.38529 * 6 5 4 8 8 H 1.09005 * 109.50942 * 296.86981 * 7 6 5 9 9 C 1.52995 * 109.50635 * 176.78180 * 7 6 5 10 10 O 1.42902 * 109.47230 * 175.08631 * 9 7 6 11 11 C 1.42898 * 114.00186 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47319 * 180.02562 * 11 10 9 13 13 C 1.52992 * 109.47482 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47482 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47212 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00129 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99861 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00346 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99914 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47008 * 59.99580 * 19 17 15 21 21 H 1.48503 * 109.47134 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46873 * 299.99710 * 19 17 15 23 23 O 1.43016 * 109.47022 * 239.88870 * 2 1 3 24 24 H 1.08990 * 109.47360 * 299.91205 * 1 2 3 25 25 H 1.09000 * 109.47006 * 59.91925 * 1 2 3 26 26 H 1.09003 * 109.47044 * 179.91259 * 1 2 3 27 27 H 1.09002 * 109.47006 * 180.08515 * 3 2 1 28 28 H 1.08999 * 109.47013 * 300.08171 * 3 2 1 29 29 H 1.08993 * 109.47653 * 60.08561 * 3 2 1 30 30 H 1.09002 * 109.50613 * 303.15154 * 4 2 1 31 31 H 1.08997 * 109.50544 * 183.02414 * 4 2 1 32 32 H 1.00900 * 110.99861 * 294.83812 * 5 4 2 33 33 H 1.09000 * 109.50825 * 181.44735 * 6 5 4 34 34 H 1.08994 * 109.53763 * 61.33966 * 6 5 4 35 35 H 1.09001 * 109.47081 * 55.08841 * 9 7 6 36 36 H 1.08999 * 109.47384 * 295.08534 * 9 7 6 37 37 H 1.09002 * 109.47259 * 300.00293 * 11 10 9 38 38 H 1.09001 * 109.47074 * 60.00315 * 11 10 9 39 39 H 1.09002 * 109.47153 * 300.00307 * 12 11 10 40 40 H 1.08998 * 109.47533 * 59.99936 * 12 11 10 41 41 H 1.09002 * 109.47103 * 300.00247 * 13 12 11 42 42 H 1.09001 * 109.47066 * 60.00169 * 13 12 11 43 43 H 1.09002 * 109.47153 * 300.00216 * 14 13 12 44 44 H 1.09001 * 109.47289 * 60.00300 * 14 13 12 45 45 H 0.96993 * 120.00442 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4421 0.0000 4 6 2.0412 -0.7234 1.2487 5 7 1.6110 -2.1285 1.2053 6 6 2.1186 -2.7917 -0.0047 7 6 1.6066 -2.0475 -1.2408 8 1 0.5188 -2.1077 -1.2773 9 6 2.1961 -2.6842 -2.5009 10 8 1.6300 -2.0642 -3.6573 11 6 2.1165 -2.5880 -4.8946 12 6 1.4465 -1.8540 -6.0579 13 6 1.9669 -2.4153 -7.3826 14 6 1.2964 -1.6817 -8.5458 15 6 1.8086 -2.2350 -9.8507 16 1 2.5395 -3.0301 -9.8503 17 6 1.3447 -1.7255 -11.0450 18 7 0.4551 -0.7570 -11.0455 19 14 1.9801 -2.4109 -12.6624 20 1 1.6650 -3.8598 -12.7439 21 1 1.3292 -1.6990 -13.7915 22 1 3.4507 -2.2192 -12.7376 23 8 2.0067 -0.6765 -1.1664 24 1 -0.3633 0.5124 0.8907 25 1 -0.3633 0.5151 -0.8893 26 1 -0.3633 -1.0277 -0.0016 27 1 3.1309 1.4415 -0.0015 28 1 1.6766 1.9566 -0.8892 29 1 1.6791 1.9558 0.8907 30 1 1.6331 -0.2451 2.1391 31 1 3.1298 -0.6768 1.2763 32 1 0.6063 -2.2010 1.2628 33 1 1.7670 -3.8231 -0.0291 34 1 3.2084 -2.7787 0.0025 35 1 1.9667 -3.7497 -2.5110 36 1 3.2772 -2.5452 -2.5066 37 1 3.1959 -2.4467 -4.9497 38 1 1.8859 -3.6517 -4.9546 39 1 0.3671 -1.9950 -6.0030 40 1 1.6775 -0.7905 -5.9978 41 1 3.0464 -2.2747 -7.4377 42 1 1.7355 -3.4788 -7.4425 43 1 0.2170 -1.8227 -8.4905 44 1 1.5274 -0.6181 -8.4862 45 1 0.1285 -0.3989 -11.8856 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385208461.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:02 Heat of formation + Delta-G solvation = -116.445915 kcal Electronic energy + Delta-G solvation = -21024.652662 eV Core-core repulsion = 17848.276551 eV Total energy + Delta-G solvation = -3176.376111 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.53799 -37.87132 -34.84216 -34.81357 -34.00880 -32.28734 -30.13413 -28.54365 -27.79762 -26.45287 -24.69682 -23.76199 -22.18151 -21.59023 -20.05128 -19.95121 -17.02597 -16.83878 -16.46548 -16.21166 -15.74668 -15.63140 -15.04853 -14.84180 -14.42079 -14.11459 -13.80579 -13.34178 -13.06024 -12.55140 -12.41345 -12.31376 -12.23894 -12.16942 -12.12693 -11.79246 -11.50339 -11.41510 -11.22841 -11.08385 -11.03763 -10.65771 -10.54777 -10.37354 -10.19354 -9.64388 -9.44519 -9.28769 -9.03225 -8.58650 -8.31029 -5.96087 -3.98607 3.31305 3.35368 3.39469 3.41935 3.59474 3.81099 4.33961 4.48069 4.49157 4.58355 4.70556 4.79018 4.92486 4.98866 5.08384 5.15996 5.25448 5.33477 5.38865 5.39671 5.41427 5.43691 5.53684 5.55655 5.62418 5.65932 5.80696 5.85318 5.92057 6.14988 6.18579 6.39036 6.51540 6.82282 6.82841 6.95626 6.99995 7.13461 7.39585 7.72238 7.87861 8.04699 8.46824 9.08570 9.65031 11.15312 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.039308 B = 0.002545 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.151211 B =10998.410923 C =11406.960251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.071 3.929 3 C -0.135 4.135 4 C 0.032 3.968 5 N -0.680 5.680 6 C 0.028 3.972 7 C 0.054 3.946 8 H 0.068 0.932 9 C 0.073 3.927 10 O -0.382 6.382 11 C 0.063 3.937 12 C -0.116 4.116 13 C -0.107 4.107 14 C 0.021 3.979 15 C -0.521 4.521 16 H 0.054 0.946 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 O -0.355 6.355 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.342 0.658 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.046 0.954 38 H 0.045 0.955 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.048 0.952 42 H 0.048 0.952 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.977 -1.098 27.260 27.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.030 3.970 3 C -0.193 4.193 4 C -0.097 4.097 5 N -0.308 5.308 6 C -0.102 4.102 7 C -0.005 4.005 8 H 0.086 0.914 9 C -0.005 4.005 10 O -0.301 6.301 11 C -0.013 4.013 12 C -0.153 4.153 13 C -0.145 4.145 14 C -0.016 4.016 15 C -0.560 4.560 16 H 0.072 0.928 17 C -0.145 4.145 18 N -0.535 5.535 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 O -0.275 6.275 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.160 0.840 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.034 0.966 44 H 0.035 0.965 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.369 -0.985 27.435 27.554 hybrid contribution -0.276 -0.281 -1.539 1.589 sum 2.093 -1.266 25.896 26.011 Atomic orbital electron populations 1.22405 0.95600 1.02295 1.03351 1.22233 0.93623 0.94072 0.87062 1.21692 1.01965 0.92915 1.02724 1.22706 1.01893 0.87987 0.97153 1.60918 1.17390 1.14538 1.37962 1.22626 1.01894 0.98327 0.87386 1.22836 0.99413 0.83436 0.94852 0.91397 1.22344 0.97711 0.95501 0.84949 1.87956 1.66769 1.62023 1.13325 1.22697 0.97813 0.97195 0.83597 1.21625 1.00526 1.00301 0.92877 1.21575 0.99786 0.99655 0.93484 1.19086 0.95789 0.95529 0.91162 1.21242 1.24209 1.19342 0.91170 0.92775 1.25036 0.95156 0.95096 0.99240 1.69956 1.30402 1.26528 1.26654 0.86658 0.79059 0.79101 0.83165 1.20267 1.21292 1.20254 1.88213 1.75137 1.22105 1.42009 0.91383 0.91048 0.92595 0.91721 0.91435 0.91088 0.89648 0.89867 0.84004 0.89332 0.89637 0.92018 0.92673 0.93612 0.93717 0.91801 0.91670 0.93334 0.93370 0.96562 0.96531 0.92964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.47 8.03 37.16 0.30 -1.17 16 2 C 0.07 0.65 1.11 -90.57 -0.10 0.55 16 3 C -0.14 -1.10 8.85 37.15 0.33 -0.77 16 4 C 0.03 0.25 5.52 -3.71 -0.02 0.23 16 5 N -0.68 -5.29 6.85 -113.50 -0.78 -6.07 16 6 C 0.03 0.23 6.05 -3.71 -0.02 0.20 16 7 C 0.05 0.58 2.68 -26.69 -0.07 0.50 16 8 H 0.07 0.74 6.49 -51.93 -0.34 0.40 16 9 C 0.07 0.85 5.60 37.16 0.21 1.06 16 10 O -0.38 -6.00 10.31 -39.86 -0.41 -6.41 16 11 C 0.06 0.98 5.94 37.16 0.22 1.20 16 12 C -0.12 -2.15 5.58 -26.74 -0.15 -2.29 16 13 C -0.11 -2.28 5.15 -26.74 -0.14 -2.42 16 14 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 15 C -0.52 -15.16 9.11 -34.44 -0.31 -15.48 16 16 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.58 13.29 55.43 0.74 -26.84 16 19 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 23 O -0.36 -4.43 9.90 -39.86 -0.39 -4.83 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.44 5.28 -51.93 -0.27 0.17 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.34 2.31 7.35 -39.29 -0.29 2.02 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 355.13 15.07 5.35 5.35 Total: -1.00 -32.42 355.13 -8.99 -41.41 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -8.47 Total: -3.19 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: 0.00 Total: -16.42 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: -0.04 Total: -32.91 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: -0.81 Total: -11.24 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.42 -8.99 -41.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385208461.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.040 kcal (2) G-P(sol) polarization free energy of solvation -32.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds