Wall clock time and date at job start Mon Mar 30 2020 05:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.50535 * 2 1 4 4 C 1.53100 * 109.50501 * 120.08592 * 2 1 3 5 5 N 1.47008 * 109.25851 * 63.08915 * 4 2 1 6 6 C 1.47018 * 110.75709 * 58.61432 * 5 4 2 7 7 C 1.53093 * 109.25711 * 301.38529 * 6 5 4 8 8 H 1.09005 * 109.50942 * 296.86981 * 7 6 5 9 9 C 1.52995 * 109.50635 * 176.78180 * 7 6 5 10 10 O 1.42902 * 109.47230 * 175.08631 * 9 7 6 11 11 C 1.42898 * 114.00186 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47319 * 180.02562 * 11 10 9 13 13 C 1.52992 * 109.47482 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47482 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47212 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00129 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99861 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00346 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99914 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47008 * 59.99580 * 19 17 15 21 21 H 1.48503 * 109.47134 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46873 * 299.99710 * 19 17 15 23 23 O 1.43016 * 109.47022 * 239.88870 * 2 1 3 24 24 H 1.08990 * 109.47360 * 299.91205 * 1 2 3 25 25 H 1.09000 * 109.47006 * 59.91925 * 1 2 3 26 26 H 1.09003 * 109.47044 * 179.91259 * 1 2 3 27 27 H 1.09002 * 109.47006 * 180.08515 * 3 2 1 28 28 H 1.08999 * 109.47013 * 300.08171 * 3 2 1 29 29 H 1.08993 * 109.47653 * 60.08561 * 3 2 1 30 30 H 1.09002 * 109.50613 * 303.15154 * 4 2 1 31 31 H 1.08997 * 109.50544 * 183.02414 * 4 2 1 32 32 H 1.00900 * 110.99861 * 294.83812 * 5 4 2 33 33 H 1.09000 * 109.50825 * 181.44735 * 6 5 4 34 34 H 1.08994 * 109.53763 * 61.33966 * 6 5 4 35 35 H 1.09001 * 109.47081 * 55.08841 * 9 7 6 36 36 H 1.08999 * 109.47384 * 295.08534 * 9 7 6 37 37 H 1.09002 * 109.47259 * 300.00293 * 11 10 9 38 38 H 1.09001 * 109.47074 * 60.00315 * 11 10 9 39 39 H 1.09002 * 109.47153 * 300.00307 * 12 11 10 40 40 H 1.08998 * 109.47533 * 59.99936 * 12 11 10 41 41 H 1.09002 * 109.47103 * 300.00247 * 13 12 11 42 42 H 1.09001 * 109.47066 * 60.00169 * 13 12 11 43 43 H 1.09002 * 109.47153 * 300.00216 * 14 13 12 44 44 H 1.09001 * 109.47289 * 60.00300 * 14 13 12 45 45 H 0.96993 * 120.00442 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4421 0.0000 4 6 2.0412 -0.7234 1.2487 5 7 1.6110 -2.1285 1.2053 6 6 2.1186 -2.7917 -0.0047 7 6 1.6066 -2.0475 -1.2408 8 1 0.5188 -2.1077 -1.2773 9 6 2.1961 -2.6842 -2.5009 10 8 1.6300 -2.0642 -3.6573 11 6 2.1165 -2.5880 -4.8946 12 6 1.4465 -1.8540 -6.0579 13 6 1.9669 -2.4153 -7.3826 14 6 1.2964 -1.6817 -8.5458 15 6 1.8086 -2.2350 -9.8507 16 1 2.5395 -3.0301 -9.8503 17 6 1.3447 -1.7255 -11.0450 18 7 0.4551 -0.7570 -11.0455 19 14 1.9801 -2.4109 -12.6624 20 1 1.6650 -3.8598 -12.7439 21 1 1.3292 -1.6990 -13.7915 22 1 3.4507 -2.2192 -12.7376 23 8 2.0067 -0.6765 -1.1664 24 1 -0.3633 0.5124 0.8907 25 1 -0.3633 0.5151 -0.8893 26 1 -0.3633 -1.0277 -0.0016 27 1 3.1309 1.4415 -0.0015 28 1 1.6766 1.9566 -0.8892 29 1 1.6791 1.9558 0.8907 30 1 1.6331 -0.2451 2.1391 31 1 3.1298 -0.6768 1.2763 32 1 0.6063 -2.2010 1.2628 33 1 1.7670 -3.8231 -0.0291 34 1 3.2084 -2.7787 0.0025 35 1 1.9667 -3.7497 -2.5110 36 1 3.2772 -2.5452 -2.5066 37 1 3.1959 -2.4467 -4.9497 38 1 1.8859 -3.6517 -4.9546 39 1 0.3671 -1.9950 -6.0030 40 1 1.6775 -0.7905 -5.9978 41 1 3.0464 -2.2747 -7.4377 42 1 1.7355 -3.4788 -7.4425 43 1 0.2170 -1.8227 -8.4905 44 1 1.5274 -0.6181 -8.4862 45 1 0.1285 -0.3989 -11.8856 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385208461.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:01 Heat of formation + Delta-G solvation = -138.584582 kcal Electronic energy + Delta-G solvation = -21025.612666 eV Core-core repulsion = 17848.276551 eV Total energy + Delta-G solvation = -3177.336115 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.26485 -39.01449 -36.49122 -35.51813 -35.03616 -34.21088 -31.21281 -30.10108 -28.45529 -27.34316 -26.38070 -24.57128 -23.41901 -22.86360 -21.75164 -20.70682 -18.44934 -17.84831 -17.66823 -17.33065 -16.92044 -16.54363 -16.39340 -15.93695 -15.59213 -15.45268 -14.78892 -14.35141 -14.25097 -13.96150 -13.65390 -13.62320 -13.15945 -12.98823 -12.89252 -12.83928 -12.77662 -12.71907 -12.41800 -12.32852 -12.25978 -12.12738 -11.92987 -11.88601 -11.47101 -11.35014 -11.12127 -10.96713 -10.58030 -10.55172 -9.25636 -8.20549 -6.32680 1.39435 1.43340 1.51259 2.39963 2.56572 2.62626 3.12139 3.19338 3.66369 3.79814 3.90726 3.94152 4.03330 4.03893 4.11591 4.27281 4.32866 4.42831 4.43452 4.44458 4.55652 4.60599 4.63956 4.67318 4.75804 4.83017 4.85311 4.87202 4.93660 4.97499 5.14187 5.18598 5.23395 5.26336 5.26715 5.51561 5.73501 5.77319 5.84299 6.20566 6.23352 6.28668 6.33013 6.84617 7.36775 8.91510 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.039308 B = 0.002545 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.151211 B =10998.410923 C =11406.960251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.063 3.937 3 C -0.135 4.135 4 C 0.038 3.962 5 N -0.680 5.680 6 C 0.036 3.964 7 C 0.054 3.946 8 H 0.062 0.938 9 C 0.066 3.934 10 O -0.408 6.408 11 C 0.072 3.928 12 C -0.109 4.109 13 C -0.093 4.093 14 C 0.022 3.978 15 C -0.546 4.546 16 H 0.063 0.937 17 C -0.004 4.004 18 N -0.936 5.936 19 Si 0.969 3.031 20 H -0.265 1.265 21 H -0.283 1.283 22 H -0.266 1.266 23 O -0.390 6.390 24 H 0.090 0.910 25 H 0.049 0.951 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.048 0.952 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.077 0.923 32 H 0.349 0.651 33 H 0.107 0.893 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.050 0.950 41 H 0.056 0.944 42 H 0.059 0.941 43 H -0.010 1.010 44 H -0.012 1.012 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.801 -2.641 28.389 28.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.023 3.977 3 C -0.192 4.192 4 C -0.092 4.092 5 N -0.308 5.308 6 C -0.095 4.095 7 C -0.005 4.005 8 H 0.080 0.920 9 C -0.011 4.011 10 O -0.327 6.327 11 C -0.004 4.004 12 C -0.147 4.147 13 C -0.131 4.131 14 C -0.015 4.015 15 C -0.584 4.584 16 H 0.082 0.918 17 C -0.202 4.202 18 N -0.576 5.576 19 Si 0.793 3.207 20 H -0.189 1.189 21 H -0.209 1.209 22 H -0.190 1.190 23 O -0.310 6.310 24 H 0.109 0.891 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.115 0.885 30 H 0.124 0.876 31 H 0.095 0.905 32 H 0.168 0.832 33 H 0.125 0.875 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.008 0.992 44 H 0.006 0.994 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.196 -2.538 28.591 28.881 hybrid contribution -0.568 0.258 -1.838 1.941 sum 2.629 -2.280 26.753 26.978 Atomic orbital electron populations 1.22377 0.95095 1.02454 1.03371 1.22472 0.94092 0.94335 0.86833 1.21728 1.01752 0.92670 1.03088 1.22682 1.01578 0.87903 0.97017 1.60943 1.17987 1.14522 1.37377 1.22590 1.01677 0.98920 0.86268 1.22914 0.99020 0.83180 0.95412 0.92049 1.22632 0.97794 0.96843 0.83856 1.87910 1.67484 1.63117 1.14225 1.22491 0.97731 0.97476 0.82714 1.21451 1.00269 0.99762 0.93238 1.21350 0.99608 0.99519 0.92624 1.19021 0.94651 0.94526 0.93321 1.21707 1.24573 1.19764 0.92309 0.91833 1.26064 0.95203 0.95273 1.03638 1.70105 1.31711 1.27923 1.27897 0.85446 0.78785 0.78739 0.77744 1.18937 1.20854 1.19042 1.88166 1.75760 1.23208 1.43845 0.89117 0.93218 0.92368 0.92075 0.93257 0.88514 0.87592 0.90494 0.83223 0.87465 0.89940 0.89489 0.92502 0.92711 0.91781 0.92597 0.93134 0.92561 0.92206 0.99177 0.99395 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.75 8.03 71.98 0.58 -2.17 16 2 C 0.06 1.10 1.11 -10.76 -0.01 1.09 16 3 C -0.13 -2.13 8.85 71.98 0.64 -1.49 16 4 C 0.04 0.51 5.52 86.32 0.48 0.99 16 5 N -0.68 -9.15 6.85 -513.01 -3.51 -12.66 16 6 C 0.04 0.52 6.05 86.31 0.52 1.04 16 7 C 0.05 1.10 2.68 30.62 0.08 1.18 16 8 H 0.06 1.30 6.49 -2.38 -0.02 1.28 16 9 C 0.07 1.45 5.60 71.98 0.40 1.86 16 10 O -0.41 -12.59 10.31 -144.56 -1.49 -14.08 16 11 C 0.07 2.16 5.94 71.98 0.43 2.59 16 12 C -0.11 -4.10 5.58 30.59 0.17 -3.93 16 13 C -0.09 -3.97 5.15 30.59 0.16 -3.81 16 14 C 0.02 1.21 4.97 29.85 0.15 1.36 16 15 C -0.55 -31.98 9.11 25.60 0.23 -31.74 16 16 H 0.06 3.52 7.74 -2.91 -0.02 3.49 16 17 C 0.00 -0.26 5.46 84.66 0.46 0.21 16 18 N -0.94 -58.75 13.29 21.45 0.28 -58.47 16 19 Si 0.97 44.99 29.54 68.60 2.03 47.02 16 20 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 21 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 22 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 23 O -0.39 -9.69 9.90 -144.56 -1.43 -11.12 16 24 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.06 0.86 5.28 -2.39 -0.01 0.85 16 27 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.35 3.93 7.35 -89.69 -0.66 3.27 16 33 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 43 H -0.01 -0.61 8.14 -2.39 -0.02 -0.62 16 44 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 45 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -70.74 355.13 0.43 -70.30 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 0.27 Total: 11.84 kcal Atomic # 6 Polarization: -37.12 SS G_CDS: 4.29 Total: -32.83 kcal Atomic # 7 Polarization: -67.90 SS G_CDS: -3.23 Total: -71.13 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -2.92 Total: -25.19 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -70.74 0.43 -70.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385208461.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.281 kcal (2) G-P(sol) polarization free energy of solvation -70.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds