Wall clock time and date at job start Mon Mar 30 2020 05:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.50176 * 2 1 4 4 C 1.53098 * 109.50665 * 239.91893 * 2 1 3 5 5 N 1.47104 * 109.20593 * 296.86844 * 4 2 1 6 6 C 1.47011 * 110.77695 * 301.41020 * 5 4 2 7 7 C 1.53101 * 109.25895 * 58.62084 * 6 5 4 8 8 H 1.09002 * 109.50590 * 63.08287 * 7 6 5 9 9 C 1.52994 * 109.50870 * 183.21600 * 7 6 5 10 10 O 1.42901 * 109.47125 * 184.77669 * 9 7 6 11 11 C 1.42900 * 113.99897 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47216 * 180.02562 * 11 10 9 13 13 C 1.52993 * 109.47386 * 180.02562 * 12 11 10 14 14 C 1.53003 * 109.47386 * 179.97438 * 13 12 11 15 15 C 1.50694 * 109.47307 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99913 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99957 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99869 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99868 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47128 * 89.99800 * 19 17 15 21 21 H 1.48504 * 109.46723 * 209.99943 * 19 17 15 22 22 H 1.48501 * 109.47238 * 329.99430 * 19 17 15 23 23 O 1.43009 * 109.50622 * 120.08878 * 2 1 3 24 24 H 1.09001 * 109.46801 * 59.99841 * 1 2 3 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47050 * 299.99729 * 1 2 3 27 27 H 1.09000 * 109.47041 * 60.00290 * 3 2 1 28 28 H 1.09003 * 109.46591 * 180.02562 * 3 2 1 29 29 H 1.08993 * 109.47669 * 299.99978 * 3 2 1 30 30 H 1.09000 * 109.51043 * 56.84434 * 4 2 1 31 31 H 1.08998 * 109.50646 * 176.97728 * 4 2 1 32 32 H 1.00905 * 110.98776 * 177.62539 * 5 4 2 33 33 H 1.08998 * 109.50864 * 298.68156 * 6 5 4 34 34 H 1.09009 * 109.50723 * 178.54800 * 6 5 4 35 35 H 1.08996 * 109.47503 * 304.78063 * 9 7 6 36 36 H 1.08998 * 109.47199 * 64.78195 * 9 7 6 37 37 H 1.09000 * 109.47605 * 300.00088 * 11 10 9 38 38 H 1.09000 * 109.47214 * 60.00614 * 11 10 9 39 39 H 1.08998 * 109.47017 * 300.00868 * 12 11 10 40 40 H 1.09010 * 109.46749 * 60.00052 * 12 11 10 41 41 H 1.09000 * 109.47432 * 299.99881 * 13 12 11 42 42 H 1.09000 * 109.47216 * 60.00302 * 13 12 11 43 43 H 1.08998 * 109.47017 * 300.00761 * 14 13 12 44 44 H 1.09000 * 109.46696 * 59.99984 * 14 13 12 45 45 H 0.97003 * 119.99726 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0408 1.4422 0.0000 4 6 2.0413 -0.7233 -1.2487 5 7 1.6111 -2.1293 -1.2037 6 6 2.1187 -2.7915 0.0067 7 6 1.6066 -2.0465 1.2423 8 1 0.5188 -2.1061 1.2784 9 6 2.1961 -2.6822 2.5029 10 8 1.6324 -2.0592 3.6588 11 6 2.1182 -2.5828 4.8965 12 6 1.4499 -1.8464 6.0592 13 6 1.9705 -2.4064 7.3844 14 6 1.3026 -1.6696 8.5471 15 6 1.8159 -2.2208 9.8523 16 1 2.5459 -3.0168 9.8525 17 6 1.3537 -1.7090 11.0462 18 7 0.4644 -0.7400 11.0459 19 14 1.9905 -2.3918 12.6641 20 1 3.1908 -1.6262 13.0864 21 1 0.9354 -2.2704 13.7021 22 1 2.3514 -3.8218 12.4901 23 8 2.0076 -0.6758 1.1664 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6778 1.9562 0.8900 28 1 3.1309 1.4416 -0.0005 29 1 1.6779 1.9563 -0.8899 30 1 1.6332 -0.2451 -2.1391 31 1 3.1299 -0.6767 -1.2763 32 1 1.9013 -2.6229 -2.0346 33 1 3.2086 -2.7780 -0.0009 34 1 1.7670 -3.8230 0.0320 35 1 1.9649 -3.7473 2.5150 36 1 3.2774 -2.5452 2.5073 37 1 1.8849 -3.6457 4.9580 38 1 3.1980 -2.4440 4.9508 39 1 1.6827 -0.7833 5.9979 40 1 0.3701 -1.9855 6.0047 41 1 1.7379 -3.4695 7.4460 42 1 3.0502 -2.2669 7.4386 43 1 1.5355 -0.6066 8.4853 44 1 0.2229 -1.8087 8.4930 45 1 0.1390 -0.3802 11.8859 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385208462.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:05 Heat of formation + Delta-G solvation = -115.293389 kcal Electronic energy + Delta-G solvation = -20994.360331 eV Core-core repulsion = 17818.034198 eV Total energy + Delta-G solvation = -3176.326133 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.26130 -37.82419 -34.91601 -34.78086 -33.92812 -32.26800 -30.17990 -28.53792 -27.55581 -26.45043 -24.71204 -23.82680 -22.09524 -21.55481 -19.98265 -19.55397 -17.07567 -16.69971 -16.43015 -16.16828 -15.75415 -15.15256 -14.95522 -14.82492 -14.40558 -14.30934 -13.95083 -13.64885 -12.98584 -12.69317 -12.38190 -12.30817 -12.17986 -12.12385 -11.96488 -11.75951 -11.42258 -11.34617 -11.04738 -11.03589 -10.67003 -10.52374 -10.41412 -10.34195 -9.82634 -9.62502 -9.41294 -9.26512 -9.00144 -8.87721 -8.29947 -5.94952 -3.97272 3.34885 3.40568 3.40779 3.43961 3.47838 3.89856 4.46080 4.49882 4.61321 4.70949 4.80905 4.85494 4.98738 5.09998 5.19558 5.24507 5.28277 5.29799 5.40291 5.42044 5.45107 5.56822 5.58820 5.69795 5.72663 5.79909 5.83449 5.96473 6.14247 6.17534 6.21575 6.40850 6.54133 6.82336 6.84788 6.98265 7.09941 7.16029 7.42804 7.74134 7.89778 8.06201 8.48340 9.10155 9.66345 11.16476 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.039268 B = 0.002543 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.881527 B =11009.288208 C =11424.724359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.111 3.889 3 C -0.139 4.139 4 C 0.032 3.968 5 N -0.684 5.684 6 C 0.028 3.972 7 C 0.094 3.906 8 H 0.078 0.922 9 C 0.071 3.929 10 O -0.379 6.379 11 C 0.063 3.937 12 C -0.116 4.116 13 C -0.107 4.107 14 C 0.021 3.979 15 C -0.520 4.520 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.896 5.896 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 O -0.361 6.361 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.039 0.961 32 H 0.346 0.654 33 H 0.041 0.959 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.047 0.953 42 H 0.048 0.952 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.226 -1.680 -28.046 28.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.072 3.928 3 C -0.196 4.196 4 C -0.098 4.098 5 N -0.316 5.316 6 C -0.102 4.102 7 C 0.035 3.965 8 H 0.096 0.904 9 C -0.007 4.007 10 O -0.298 6.298 11 C -0.013 4.013 12 C -0.153 4.153 13 C -0.145 4.145 14 C -0.016 4.016 15 C -0.559 4.559 16 H 0.073 0.927 17 C -0.146 4.146 18 N -0.535 5.535 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 O -0.280 6.280 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.057 0.943 32 H 0.165 0.835 33 H 0.060 0.940 34 H 0.106 0.894 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.035 0.965 44 H 0.035 0.965 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.486 -1.188 -27.520 27.658 hybrid contribution 1.345 -0.822 0.492 1.651 sum 3.831 -2.010 -27.028 27.372 Atomic orbital electron populations 1.22275 0.94784 1.03303 1.02163 1.21548 0.94199 0.92508 0.84581 1.21745 1.01746 0.93243 1.02880 1.22658 0.98285 0.89497 0.99358 1.60493 1.63533 1.02775 1.04774 1.22522 0.98134 0.98783 0.90774 1.22099 0.99905 0.82191 0.92258 0.90415 1.22351 0.97565 0.95561 0.85208 1.87956 1.66877 1.61767 1.13239 1.22698 0.97770 0.97222 0.83603 1.21628 1.00586 1.00302 0.92826 1.21574 0.99760 0.99656 0.93505 1.19091 0.95832 0.95524 0.91168 1.21279 1.24167 1.19237 0.91170 0.92739 1.25039 0.95156 0.95133 0.99240 1.69974 1.30466 1.26543 1.26532 0.86601 0.78507 0.79381 0.83538 1.20690 1.21237 1.19920 1.88140 1.75044 1.22472 1.42365 0.92011 0.91142 0.91916 0.91124 0.92002 0.91109 0.89700 0.94272 0.83550 0.94034 0.89379 0.92026 0.92899 0.93719 0.93659 0.91643 0.91724 0.93375 0.93367 0.96522 0.96521 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.64 8.17 37.16 0.30 -1.33 16 2 C 0.11 1.12 1.11 -90.56 -0.10 1.02 16 3 C -0.14 -1.19 8.85 37.16 0.33 -0.87 16 4 C 0.03 0.25 5.47 -3.66 -0.02 0.23 16 5 N -0.68 -5.31 6.29 -113.43 -0.71 -6.02 16 6 C 0.03 0.23 6.05 -3.71 -0.02 0.21 16 7 C 0.09 1.07 2.69 -26.68 -0.07 1.00 16 8 H 0.08 0.95 6.49 -51.93 -0.34 0.61 16 9 C 0.07 0.85 5.60 37.15 0.21 1.06 16 10 O -0.38 -6.05 10.31 -39.95 -0.41 -6.46 16 11 C 0.06 0.99 5.94 37.16 0.22 1.21 16 12 C -0.12 -2.16 5.58 -26.73 -0.15 -2.31 16 13 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 14 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 15 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 16 H 0.05 1.53 7.74 -52.48 -0.41 1.13 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.62 13.29 55.43 0.74 -26.89 16 19 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 23 O -0.36 -4.74 9.89 -39.95 -0.40 -5.14 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.74 6.12 -51.93 -0.32 0.42 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.35 1.93 8.90 -39.29 -0.35 1.58 16 33 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.09 0.61 8.14 -51.92 -0.42 0.18 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 357.06 15.07 5.38 5.38 Total: -1.00 -32.57 357.06 -8.99 -41.56 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -8.58 Total: -3.76 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: 0.01 Total: -15.72 kcal Atomic # 7 Polarization: -32.93 SS G_CDS: 0.02 Total: -32.91 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: -0.81 Total: -11.60 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.57 -8.99 -41.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385208462.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.729 kcal (2) G-P(sol) polarization free energy of solvation -32.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds