Wall clock time and date at job start Mon Mar 30 2020 05:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.50176 * 2 1 4 4 C 1.53098 * 109.50665 * 239.91893 * 2 1 3 5 5 N 1.47104 * 109.20593 * 296.86844 * 4 2 1 6 6 C 1.47011 * 110.77695 * 301.41020 * 5 4 2 7 7 C 1.53101 * 109.25895 * 58.62084 * 6 5 4 8 8 H 1.09002 * 109.50590 * 63.08287 * 7 6 5 9 9 C 1.52994 * 109.50870 * 183.21600 * 7 6 5 10 10 O 1.42901 * 109.47125 * 184.77669 * 9 7 6 11 11 C 1.42900 * 113.99897 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47216 * 180.02562 * 11 10 9 13 13 C 1.52993 * 109.47386 * 180.02562 * 12 11 10 14 14 C 1.53003 * 109.47386 * 179.97438 * 13 12 11 15 15 C 1.50694 * 109.47307 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99913 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99957 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99869 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99868 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47128 * 89.99800 * 19 17 15 21 21 H 1.48504 * 109.46723 * 209.99943 * 19 17 15 22 22 H 1.48501 * 109.47238 * 329.99430 * 19 17 15 23 23 O 1.43009 * 109.50622 * 120.08878 * 2 1 3 24 24 H 1.09001 * 109.46801 * 59.99841 * 1 2 3 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47050 * 299.99729 * 1 2 3 27 27 H 1.09000 * 109.47041 * 60.00290 * 3 2 1 28 28 H 1.09003 * 109.46591 * 180.02562 * 3 2 1 29 29 H 1.08993 * 109.47669 * 299.99978 * 3 2 1 30 30 H 1.09000 * 109.51043 * 56.84434 * 4 2 1 31 31 H 1.08998 * 109.50646 * 176.97728 * 4 2 1 32 32 H 1.00905 * 110.98776 * 177.62539 * 5 4 2 33 33 H 1.08998 * 109.50864 * 298.68156 * 6 5 4 34 34 H 1.09009 * 109.50723 * 178.54800 * 6 5 4 35 35 H 1.08996 * 109.47503 * 304.78063 * 9 7 6 36 36 H 1.08998 * 109.47199 * 64.78195 * 9 7 6 37 37 H 1.09000 * 109.47605 * 300.00088 * 11 10 9 38 38 H 1.09000 * 109.47214 * 60.00614 * 11 10 9 39 39 H 1.08998 * 109.47017 * 300.00868 * 12 11 10 40 40 H 1.09010 * 109.46749 * 60.00052 * 12 11 10 41 41 H 1.09000 * 109.47432 * 299.99881 * 13 12 11 42 42 H 1.09000 * 109.47216 * 60.00302 * 13 12 11 43 43 H 1.08998 * 109.47017 * 300.00761 * 14 13 12 44 44 H 1.09000 * 109.46696 * 59.99984 * 14 13 12 45 45 H 0.97003 * 119.99726 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0408 1.4422 0.0000 4 6 2.0413 -0.7233 -1.2487 5 7 1.6111 -2.1293 -1.2037 6 6 2.1187 -2.7915 0.0067 7 6 1.6066 -2.0465 1.2423 8 1 0.5188 -2.1061 1.2784 9 6 2.1961 -2.6822 2.5029 10 8 1.6324 -2.0592 3.6588 11 6 2.1182 -2.5828 4.8965 12 6 1.4499 -1.8464 6.0592 13 6 1.9705 -2.4064 7.3844 14 6 1.3026 -1.6696 8.5471 15 6 1.8159 -2.2208 9.8523 16 1 2.5459 -3.0168 9.8525 17 6 1.3537 -1.7090 11.0462 18 7 0.4644 -0.7400 11.0459 19 14 1.9905 -2.3918 12.6641 20 1 3.1908 -1.6262 13.0864 21 1 0.9354 -2.2704 13.7021 22 1 2.3514 -3.8218 12.4901 23 8 2.0076 -0.6758 1.1664 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6778 1.9562 0.8900 28 1 3.1309 1.4416 -0.0005 29 1 1.6779 1.9563 -0.8899 30 1 1.6332 -0.2451 -2.1391 31 1 3.1299 -0.6767 -1.2763 32 1 1.9013 -2.6229 -2.0346 33 1 3.2086 -2.7780 -0.0009 34 1 1.7670 -3.8230 0.0320 35 1 1.9649 -3.7473 2.5150 36 1 3.2774 -2.5452 2.5073 37 1 1.8849 -3.6457 4.9580 38 1 3.1980 -2.4440 4.9508 39 1 1.6827 -0.7833 5.9979 40 1 0.3701 -1.9855 6.0047 41 1 1.7379 -3.4695 7.4460 42 1 3.0502 -2.2669 7.4386 43 1 1.5355 -0.6066 8.4853 44 1 0.2229 -1.8087 8.4930 45 1 0.1390 -0.3802 11.8859 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385208462.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:04 Heat of formation + Delta-G solvation = -137.449334 kcal Electronic energy + Delta-G solvation = -20995.321085 eV Core-core repulsion = 17818.034198 eV Total energy + Delta-G solvation = -3177.286887 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.03674 -38.98499 -36.47400 -35.61324 -34.98833 -34.19182 -31.26649 -30.14447 -28.29865 -27.34938 -26.39110 -24.69365 -23.40575 -22.79916 -21.73624 -20.31367 -18.44678 -17.88702 -17.51583 -17.43228 -16.92415 -16.52643 -16.02968 -15.74516 -15.59579 -15.35419 -15.05004 -14.74639 -14.30298 -13.95301 -13.84415 -13.60109 -13.20767 -13.02612 -12.91594 -12.84844 -12.71701 -12.67143 -12.38905 -12.32363 -12.22003 -12.11173 -11.89954 -11.46227 -11.33783 -11.25286 -11.07494 -10.61675 -10.56361 -10.53555 -9.49338 -8.19890 -6.31814 1.39967 1.42167 1.53273 2.40386 2.55238 2.64170 3.12922 3.19429 3.77138 3.88665 3.90950 4.01652 4.05795 4.08345 4.17507 4.30767 4.37085 4.41563 4.46212 4.50512 4.61966 4.63129 4.64407 4.68878 4.74381 4.84481 4.86723 4.93220 4.98869 5.03283 5.16127 5.24821 5.25125 5.28473 5.37040 5.52905 5.74947 5.78370 5.85515 6.23014 6.24795 6.35449 6.37652 6.85741 7.37609 8.92391 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.039268 B = 0.002543 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.881527 B =11009.288208 C =11424.724359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.099 3.901 3 C -0.137 4.137 4 C 0.037 3.963 5 N -0.688 5.688 6 C 0.035 3.965 7 C 0.090 3.910 8 H 0.063 0.937 9 C 0.065 3.935 10 O -0.406 6.406 11 C 0.072 3.928 12 C -0.110 4.110 13 C -0.093 4.093 14 C 0.021 3.979 15 C -0.544 4.544 16 H 0.063 0.937 17 C -0.005 4.005 18 N -0.936 5.936 19 Si 0.969 3.031 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.261 1.261 23 O -0.393 6.393 24 H 0.081 0.919 25 H 0.061 0.939 26 H 0.043 0.957 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.105 0.895 31 H 0.038 0.962 32 H 0.361 0.639 33 H 0.044 0.956 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.050 0.950 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.056 0.944 43 H -0.012 1.012 44 H -0.010 1.010 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.393 -3.229 -29.232 29.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.060 3.940 3 C -0.194 4.194 4 C -0.093 4.093 5 N -0.321 5.321 6 C -0.095 4.095 7 C 0.032 3.968 8 H 0.081 0.919 9 C -0.011 4.011 10 O -0.326 6.326 11 C -0.004 4.004 12 C -0.148 4.148 13 C -0.131 4.131 14 C -0.016 4.016 15 C -0.582 4.582 16 H 0.082 0.918 17 C -0.202 4.202 18 N -0.576 5.576 19 Si 0.793 3.207 20 H -0.197 1.197 21 H -0.207 1.207 22 H -0.185 1.185 23 O -0.313 6.313 24 H 0.100 0.900 25 H 0.080 0.920 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.114 0.886 30 H 0.123 0.877 31 H 0.057 0.943 32 H 0.182 0.818 33 H 0.062 0.938 34 H 0.124 0.876 35 H 0.105 0.895 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.006 0.994 44 H 0.008 0.992 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.663 -2.751 -28.740 29.102 hybrid contribution 0.933 -0.282 0.815 1.271 sum 4.596 -3.033 -27.925 28.462 Atomic orbital electron populations 1.22225 0.94926 1.02674 1.02178 1.21821 0.94214 0.93184 0.84754 1.21769 1.01665 0.92704 1.03305 1.22604 0.98229 0.89617 0.98832 1.60459 1.63659 1.02816 1.05181 1.22441 0.98156 0.99186 0.89703 1.22166 0.99114 0.82107 0.93373 0.91903 1.22614 0.97708 0.96831 0.83981 1.87910 1.67622 1.62873 1.14176 1.22499 0.97759 0.97497 0.82654 1.21457 1.00303 0.99798 0.93206 1.21349 0.99618 0.99500 0.92615 1.19027 0.94673 0.94545 0.93330 1.21733 1.24516 1.19643 0.92302 0.91840 1.26066 0.95210 0.95308 1.03644 1.70119 1.31775 1.27929 1.27825 0.85389 0.78002 0.79195 0.78100 1.19714 1.20734 1.18485 1.88096 1.75530 1.23527 1.44143 0.90003 0.92034 0.93832 0.92821 0.92105 0.88557 0.87721 0.94337 0.81848 0.93781 0.87553 0.89476 0.92490 0.91771 0.92635 0.93075 0.92574 0.92221 0.92539 0.99370 0.99161 0.92760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 8.17 71.98 0.59 -2.53 16 2 C 0.10 1.93 1.11 -10.76 -0.01 1.91 16 3 C -0.14 -2.28 8.85 71.98 0.64 -1.65 16 4 C 0.04 0.51 5.47 86.30 0.47 0.99 16 5 N -0.69 -9.19 6.29 -512.77 -3.23 -12.41 16 6 C 0.03 0.52 6.05 86.32 0.52 1.04 16 7 C 0.09 2.00 2.69 30.63 0.08 2.08 16 8 H 0.06 1.54 6.49 -2.39 -0.02 1.53 16 9 C 0.07 1.50 5.60 71.98 0.40 1.90 16 10 O -0.41 -12.77 10.31 -144.46 -1.49 -14.26 16 11 C 0.07 2.17 5.94 71.98 0.43 2.60 16 12 C -0.11 -4.14 5.58 30.59 0.17 -3.97 16 13 C -0.09 -3.97 5.15 30.59 0.16 -3.81 16 14 C 0.02 1.18 4.97 29.85 0.15 1.33 16 15 C -0.54 -31.94 9.11 25.60 0.23 -31.70 16 16 H 0.06 3.52 7.74 -2.91 -0.02 3.50 16 17 C 0.00 -0.29 5.46 84.66 0.46 0.17 16 18 N -0.94 -58.87 13.29 21.45 0.28 -58.59 16 19 Si 0.97 45.11 29.54 68.60 2.03 47.14 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 22 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 23 O -0.39 -10.32 9.89 -144.46 -1.43 -11.75 16 24 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.06 1.28 6.12 -2.39 -0.01 1.26 16 26 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.05 1.05 8.14 -2.39 -0.02 1.04 16 28 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.36 3.06 8.90 -89.69 -0.80 2.26 16 33 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 41 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 43 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 44 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 45 H 0.26 15.50 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -71.25 357.06 0.59 -70.66 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 0.13 Total: 10.84 kcal Atomic # 6 Polarization: -35.92 SS G_CDS: 4.29 Total: -31.63 kcal Atomic # 7 Polarization: -68.06 SS G_CDS: -2.94 Total: -71.00 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -2.92 Total: -26.01 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -71.25 0.59 -70.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385208462.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.793 kcal (2) G-P(sol) polarization free energy of solvation -71.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds