Wall clock time and date at job start Mon Mar 30 2020 05:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42905 * 109.47179 * 180.02562 * 9 7 2 11 11 C 1.42897 * 113.99899 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.46795 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.47215 * 65.00306 * 12 11 10 14 14 C 1.46899 * 111.00141 * 179.97438 * 13 12 11 15 15 C 1.53000 * 109.46901 * 179.97438 * 14 13 12 16 16 H 1.08999 * 109.46980 * 304.99697 * 15 14 13 17 17 C 1.52997 * 109.46890 * 65.00182 * 15 14 13 18 18 C 1.53002 * 109.46815 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.47468 * 299.99889 * 18 17 15 20 20 C 1.53004 * 109.46917 * 59.99990 * 19 18 17 21 21 H 1.09000 * 109.47113 * 60.00270 * 20 19 18 22 22 C 1.53000 * 109.47130 * 179.97438 * 20 19 18 23 23 O 1.42894 * 109.47489 * 295.00394 * 22 20 19 24 24 C 1.52997 * 109.46775 * 185.00057 * 15 14 13 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 27 27 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 28 28 H 1.08995 * 109.47179 * 299.99629 * 11 10 9 29 29 H 1.09002 * 109.47160 * 60.00474 * 11 10 9 30 30 H 1.09000 * 109.47075 * 184.99889 * 12 11 10 31 31 H 1.08993 * 109.47766 * 304.99947 * 12 11 10 32 32 H 1.00895 * 110.99446 * 303.95185 * 13 12 11 33 33 H 1.09003 * 109.47267 * 300.00000 * 14 13 12 34 34 H 1.09002 * 109.47131 * 60.00030 * 14 13 12 35 35 H 1.08999 * 109.47173 * 299.99713 * 17 15 14 36 36 H 1.09006 * 109.47080 * 60.00060 * 17 15 14 37 37 H 1.09006 * 109.46937 * 60.00353 * 18 17 15 38 38 H 1.08998 * 109.47318 * 179.97438 * 18 17 15 39 39 H 1.08998 * 109.47527 * 179.97438 * 19 18 17 40 40 H 1.08992 * 109.47336 * 300.00261 * 19 18 17 41 41 H 1.09008 * 109.46929 * 55.00501 * 22 20 19 42 42 H 1.09002 * 109.47001 * 174.99927 * 22 20 19 43 43 H 0.96698 * 114.00262 * 180.02562 * 23 22 20 44 44 H 1.08998 * 109.47794 * 300.00172 * 24 15 14 45 45 H 1.09005 * 109.47217 * 60.00283 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 2.1796 -3.5854 -0.0005 11 6 1.5650 -4.8754 -0.0011 12 6 2.6480 -5.9562 -0.0017 13 7 3.4081 -5.8885 1.2536 14 6 4.4588 -6.9145 1.2888 15 6 5.2274 -6.8122 2.6078 16 1 5.6065 -5.7976 2.7297 17 6 4.2922 -7.1505 3.7705 18 6 5.0610 -7.0488 5.0894 19 6 6.2324 -8.0329 5.0742 20 6 7.1675 -7.6947 3.9114 21 1 7.5469 -6.6802 4.0336 22 6 8.3393 -8.6784 3.8966 23 8 9.1247 -8.5017 5.0771 24 6 6.3991 -7.7960 2.5928 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5571 0.8897 27 1 0.6240 -2.5568 -0.8903 28 1 0.9447 -4.9827 0.8886 29 1 0.9452 -4.9822 -0.8914 30 1 2.1820 -6.9374 -0.0917 31 1 3.3215 -5.7953 -0.8434 32 1 3.7967 -4.9676 1.3916 33 1 4.0050 -7.9022 1.2079 34 1 5.1450 -6.7606 0.4560 35 1 3.4575 -6.4496 3.7811 36 1 3.9132 -8.1652 3.6485 37 1 5.4403 -6.0342 5.2116 38 1 4.3947 -7.2893 5.9178 39 1 6.7803 -7.9602 6.0136 40 1 5.8531 -9.0474 4.9520 41 1 7.9568 -9.6986 3.8640 42 1 8.9574 -8.4939 3.0179 43 1 9.8870 -9.0938 5.1347 44 1 6.0201 -8.8107 2.4709 45 1 7.0653 -7.5550 1.7644 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385211678.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:02 Heat of formation + Delta-G solvation = -136.650559 kcal Electronic energy + Delta-G solvation = -20870.211220 eV Core-core repulsion = 17692.958970 eV Total energy + Delta-G solvation = -3177.252250 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.38332 -37.32330 -36.70478 -35.16952 -32.75486 -31.80128 -31.43383 -28.54527 -26.72589 -25.73988 -24.23364 -22.34708 -22.10478 -21.29639 -20.46715 -19.88716 -17.58680 -16.43830 -15.92897 -15.57980 -15.46395 -15.13664 -14.84739 -14.55137 -14.36858 -14.28572 -13.81090 -13.56666 -13.25524 -12.88945 -12.40413 -12.32444 -11.94781 -11.87498 -11.62835 -11.56403 -11.20695 -11.12856 -10.95151 -10.81201 -10.73631 -10.59532 -10.47144 -10.34047 -10.13563 -10.02685 -9.91858 -9.10775 -8.80791 -8.15946 -8.14569 -6.09805 -4.11661 3.32772 3.35450 3.39218 3.84513 4.35704 4.42573 4.48591 4.61760 4.77246 4.89619 4.96933 5.06561 5.19327 5.21902 5.26498 5.29732 5.43610 5.44590 5.48136 5.53416 5.58199 5.67093 5.73800 5.74964 5.79016 5.93160 6.07257 6.08261 6.15007 6.17224 6.22853 6.26637 6.37503 6.45848 6.48134 7.12756 7.27063 7.30781 7.45428 7.69348 7.79714 8.16608 8.59307 9.01196 9.53069 11.01674 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.022093 B = 0.002956 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.063237 B = 9471.176701 C =10098.328110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.515 4.515 8 H 0.065 0.935 9 C 0.198 3.802 10 O -0.399 6.399 11 C 0.062 3.938 12 C 0.066 3.934 13 N -0.686 5.686 14 C 0.063 3.937 15 C -0.083 4.083 16 H 0.071 0.929 17 C -0.106 4.106 18 C -0.123 4.123 19 C -0.108 4.108 20 C -0.086 4.086 21 H 0.077 0.923 22 C 0.079 3.921 23 O -0.573 6.573 24 C -0.106 4.106 25 H 0.264 0.736 26 H 0.006 0.994 27 H 0.004 0.996 28 H 0.046 0.954 29 H 0.039 0.961 30 H 0.073 0.927 31 H 0.032 0.968 32 H 0.355 0.645 33 H 0.066 0.934 34 H 0.025 0.975 35 H 0.078 0.922 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.044 0.956 42 H 0.044 0.956 43 H 0.376 0.624 44 H 0.063 0.937 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.458 -19.918 6.886 25.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.212 1.212 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.554 4.554 8 H 0.083 0.917 9 C 0.123 3.877 10 O -0.319 6.319 11 C -0.016 4.016 12 C -0.063 4.063 13 N -0.319 5.319 14 C -0.066 4.066 15 C -0.102 4.102 16 H 0.090 0.910 17 C -0.143 4.143 18 C -0.160 4.160 19 C -0.146 4.146 20 C -0.105 4.105 21 H 0.095 0.905 22 C 0.002 3.998 23 O -0.378 6.378 24 C -0.144 4.144 25 H 0.074 0.926 26 H 0.024 0.976 27 H 0.021 0.979 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.174 0.826 33 H 0.085 0.915 34 H 0.043 0.957 35 H 0.096 0.904 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.223 0.777 44 H 0.082 0.918 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.574 -19.677 7.339 24.478 hybrid contribution 1.081 0.745 -0.878 1.580 sum 13.655 -18.932 6.461 24.220 Atomic orbital electron populations 1.69956 1.06101 1.27252 1.50451 1.24953 0.94979 0.99423 0.95158 0.86397 0.79313 0.81946 0.78815 1.21156 1.19980 1.20075 1.21015 0.93951 0.89440 1.50951 0.91696 1.20163 0.88690 0.83445 0.95353 1.87784 1.35784 1.13145 1.95227 1.22293 0.94559 0.85279 0.99451 1.21930 0.95857 0.97914 0.90585 1.60451 1.27074 1.09112 1.35216 1.21972 0.92529 0.96389 0.95719 1.21110 0.94643 0.99403 0.94994 0.91019 1.21486 0.98174 1.01828 0.92835 1.21586 0.96941 0.99556 0.97934 1.21511 0.95973 0.99029 0.98069 1.21130 0.93891 0.99699 0.95784 0.90462 1.22266 0.92412 0.98349 0.86806 1.86494 1.43622 1.64380 1.43307 1.21516 0.96819 0.99926 0.96162 0.92601 0.97632 0.97867 0.93573 0.94266 0.90852 0.94940 0.82566 0.91518 0.95671 0.90361 0.92575 0.92027 0.92174 0.91682 0.92478 0.93802 0.93808 0.77713 0.91838 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -15.28 9.43 -34.44 -0.32 -15.60 16 8 H 0.06 1.90 7.81 -52.49 -0.41 1.49 16 9 C 0.20 5.48 5.69 36.00 0.20 5.69 16 10 O -0.40 -9.60 9.85 -35.23 -0.35 -9.95 16 11 C 0.06 1.17 6.28 37.16 0.23 1.40 16 12 C 0.07 1.01 6.11 -3.82 -0.02 0.99 16 13 N -0.69 -10.12 5.96 -113.78 -0.68 -10.80 16 14 C 0.06 0.75 5.07 -3.82 -0.02 0.73 16 15 C -0.08 -0.88 2.33 -90.62 -0.21 -1.10 16 16 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 17 C -0.11 -1.15 5.09 -26.73 -0.14 -1.29 16 18 C -0.12 -1.25 5.92 -26.73 -0.16 -1.40 16 19 C -0.11 -1.02 5.10 -26.73 -0.14 -1.16 16 20 C -0.09 -0.79 2.42 -90.64 -0.22 -1.01 16 21 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 22 C 0.08 0.62 6.43 37.16 0.24 0.86 16 23 O -0.57 -4.86 13.19 -35.23 -0.46 -5.32 16 24 C -0.11 -0.94 4.48 -26.75 -0.12 -1.06 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.01 0.17 8.14 -51.92 -0.42 -0.25 16 27 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.35 5.89 8.29 -39.29 -0.33 5.56 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.08 1.00 7.75 -51.93 -0.40 0.60 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.66 7.82 -51.93 -0.41 0.25 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.04 0.30 8.14 -51.92 -0.42 -0.12 16 42 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.38 1.46 9.12 45.56 0.42 1.87 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 358.62 15.07 5.40 5.40 Total: -1.00 -31.80 358.62 -9.01 -40.81 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -7.87 Total: 0.70 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -0.77 Total: -11.43 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.06 Total: -37.19 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.81 Total: -15.27 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.80 -9.01 -40.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385211678.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.838 kcal (2) G-P(sol) polarization free energy of solvation -31.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds