Wall clock time and date at job start Mon Mar 30 2020 05:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42905 * 109.47179 * 180.02562 * 9 7 2 11 11 C 1.42897 * 113.99899 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.46795 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.47215 * 65.00306 * 12 11 10 14 14 C 1.46899 * 111.00141 * 179.97438 * 13 12 11 15 15 C 1.53000 * 109.46901 * 179.97438 * 14 13 12 16 16 H 1.08999 * 109.46980 * 304.99697 * 15 14 13 17 17 C 1.52997 * 109.46890 * 65.00182 * 15 14 13 18 18 C 1.53002 * 109.46815 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.47468 * 299.99889 * 18 17 15 20 20 C 1.53004 * 109.46917 * 59.99990 * 19 18 17 21 21 H 1.09000 * 109.47113 * 60.00270 * 20 19 18 22 22 C 1.53000 * 109.47130 * 179.97438 * 20 19 18 23 23 O 1.42894 * 109.47489 * 295.00394 * 22 20 19 24 24 C 1.52997 * 109.46775 * 185.00057 * 15 14 13 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 27 27 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 28 28 H 1.08995 * 109.47179 * 299.99629 * 11 10 9 29 29 H 1.09002 * 109.47160 * 60.00474 * 11 10 9 30 30 H 1.09000 * 109.47075 * 184.99889 * 12 11 10 31 31 H 1.08993 * 109.47766 * 304.99947 * 12 11 10 32 32 H 1.00895 * 110.99446 * 303.95185 * 13 12 11 33 33 H 1.09003 * 109.47267 * 300.00000 * 14 13 12 34 34 H 1.09002 * 109.47131 * 60.00030 * 14 13 12 35 35 H 1.08999 * 109.47173 * 299.99713 * 17 15 14 36 36 H 1.09006 * 109.47080 * 60.00060 * 17 15 14 37 37 H 1.09006 * 109.46937 * 60.00353 * 18 17 15 38 38 H 1.08998 * 109.47318 * 179.97438 * 18 17 15 39 39 H 1.08998 * 109.47527 * 179.97438 * 19 18 17 40 40 H 1.08992 * 109.47336 * 300.00261 * 19 18 17 41 41 H 1.09008 * 109.46929 * 55.00501 * 22 20 19 42 42 H 1.09002 * 109.47001 * 174.99927 * 22 20 19 43 43 H 0.96698 * 114.00262 * 180.02562 * 23 22 20 44 44 H 1.08998 * 109.47794 * 300.00172 * 24 15 14 45 45 H 1.09005 * 109.47217 * 60.00283 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 2.1796 -3.5854 -0.0005 11 6 1.5650 -4.8754 -0.0011 12 6 2.6480 -5.9562 -0.0017 13 7 3.4081 -5.8885 1.2536 14 6 4.4588 -6.9145 1.2888 15 6 5.2274 -6.8122 2.6078 16 1 5.6065 -5.7976 2.7297 17 6 4.2922 -7.1505 3.7705 18 6 5.0610 -7.0488 5.0894 19 6 6.2324 -8.0329 5.0742 20 6 7.1675 -7.6947 3.9114 21 1 7.5469 -6.6802 4.0336 22 6 8.3393 -8.6784 3.8966 23 8 9.1247 -8.5017 5.0771 24 6 6.3991 -7.7960 2.5928 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5571 0.8897 27 1 0.6240 -2.5568 -0.8903 28 1 0.9447 -4.9827 0.8886 29 1 0.9452 -4.9822 -0.8914 30 1 2.1820 -6.9374 -0.0917 31 1 3.3215 -5.7953 -0.8434 32 1 3.7967 -4.9676 1.3916 33 1 4.0050 -7.9022 1.2079 34 1 5.1450 -6.7606 0.4560 35 1 3.4575 -6.4496 3.7811 36 1 3.9132 -8.1652 3.6485 37 1 5.4403 -6.0342 5.2116 38 1 4.3947 -7.2893 5.9178 39 1 6.7803 -7.9602 6.0136 40 1 5.8531 -9.0474 4.9520 41 1 7.9568 -9.6986 3.8640 42 1 8.9574 -8.4939 3.0179 43 1 9.8870 -9.0938 5.1347 44 1 6.0201 -8.8107 2.4709 45 1 7.0653 -7.5550 1.7644 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385211678.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:01 Heat of formation + Delta-G solvation = -159.520636 kcal Electronic energy + Delta-G solvation = -20871.202941 eV Core-core repulsion = 17692.958970 eV Total energy + Delta-G solvation = -3178.243971 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.18789 -38.85233 -37.62806 -36.36418 -34.89081 -32.83101 -32.26665 -30.11181 -28.60083 -26.43731 -25.28069 -24.51311 -22.95437 -22.62890 -21.29833 -20.69215 -18.64319 -18.18657 -17.54108 -16.96002 -16.52153 -16.41832 -16.06885 -15.83389 -15.62292 -15.17055 -15.02715 -14.89317 -14.43970 -14.03799 -13.59115 -13.41363 -13.25070 -13.14109 -12.90845 -12.76501 -12.63911 -12.52782 -12.32747 -12.27706 -11.91180 -11.84754 -11.77395 -11.30929 -11.30374 -11.00591 -10.93925 -10.85676 -10.71791 -10.23608 -9.29905 -8.32771 -6.45431 1.39337 1.44210 1.52584 2.34006 3.00960 3.12073 3.22354 3.48053 3.74320 3.83020 4.00265 4.10930 4.22187 4.34720 4.37883 4.42690 4.44365 4.55350 4.59751 4.63633 4.69635 4.73164 4.78509 4.82333 4.85099 4.86515 4.90649 4.93265 4.98466 5.12450 5.17618 5.28301 5.32160 5.36886 5.47939 5.53549 5.55996 5.62758 5.94948 6.15445 6.41631 6.52656 6.80772 6.94544 7.26451 8.79414 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.022093 B = 0.002956 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.063237 B = 9471.176701 C =10098.328110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.984 3.016 4 H -0.275 1.275 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.549 4.549 8 H 0.062 0.938 9 C 0.212 3.788 10 O -0.409 6.409 11 C 0.054 3.946 12 C 0.076 3.924 13 N -0.695 5.695 14 C 0.067 3.933 15 C -0.080 4.080 16 H 0.053 0.947 17 C -0.101 4.101 18 C -0.121 4.121 19 C -0.102 4.102 20 C -0.088 4.088 21 H 0.057 0.943 22 C 0.081 3.919 23 O -0.595 6.595 24 C -0.098 4.098 25 H 0.271 0.729 26 H -0.016 1.016 27 H -0.015 1.015 28 H 0.042 0.958 29 H 0.047 0.953 30 H 0.104 0.896 31 H 0.032 0.968 32 H 0.341 0.659 33 H 0.082 0.918 34 H 0.029 0.971 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.047 0.953 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.054 0.946 43 H 0.395 0.605 44 H 0.078 0.922 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.828 -20.881 6.668 26.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.193 4.193 3 Si 0.806 3.194 4 H -0.200 1.200 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.587 4.587 8 H 0.080 0.920 9 C 0.137 3.863 10 O -0.329 6.329 11 C -0.023 4.023 12 C -0.053 4.053 13 N -0.327 5.327 14 C -0.062 4.062 15 C -0.098 4.098 16 H 0.072 0.928 17 C -0.138 4.138 18 C -0.159 4.159 19 C -0.140 4.140 20 C -0.107 4.107 21 H 0.076 0.924 22 C 0.003 3.997 23 O -0.403 6.403 24 C -0.136 4.136 25 H 0.080 0.920 26 H 0.001 0.999 27 H 0.003 0.997 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.122 0.878 31 H 0.050 0.950 32 H 0.158 0.842 33 H 0.100 0.900 34 H 0.047 0.953 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.245 0.755 44 H 0.097 0.903 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 13.958 -20.687 7.121 25.952 hybrid contribution 0.621 0.958 -0.783 1.384 sum 14.579 -19.729 6.339 25.337 Atomic orbital electron populations 1.70068 1.07794 1.28731 1.50407 1.25986 0.95978 1.03456 0.93907 0.85226 0.78088 0.76670 0.79381 1.19981 1.19009 1.18966 1.21362 0.94096 0.90846 1.52357 0.91953 1.19779 0.88565 0.84644 0.93325 1.87749 1.35524 1.14383 1.95205 1.22616 0.96185 0.83900 0.99638 1.21893 0.94924 0.97652 0.90817 1.60502 1.28258 1.08986 1.34905 1.22032 0.91958 0.95954 0.96271 1.21068 0.95234 0.99129 0.94416 0.92844 1.21412 0.97513 1.01596 0.93307 1.21563 0.97374 0.99197 0.97763 1.21450 0.95448 0.99179 0.97916 1.21116 0.94583 0.99215 0.95742 0.92441 1.22247 0.91978 0.98467 0.86984 1.86443 1.44737 1.65470 1.43676 1.21441 0.95970 0.99960 0.96234 0.92024 0.99852 0.99737 0.93981 0.93433 0.87764 0.95013 0.84180 0.90013 0.95297 0.92720 0.91610 0.93371 0.91796 0.92482 0.91381 0.92320 0.92819 0.75515 0.90339 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.74 13.29 21.45 0.28 -56.45 16 2 C 0.01 0.31 5.46 84.66 0.46 0.77 16 3 Si 0.98 44.81 29.54 68.60 2.03 46.84 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 6 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.55 -33.14 9.43 25.60 0.24 -32.90 16 8 H 0.06 3.70 7.81 -2.91 -0.02 3.67 16 9 C 0.21 12.15 5.69 71.23 0.41 12.55 16 10 O -0.41 -20.09 9.85 -148.98 -1.47 -21.56 16 11 C 0.05 2.04 6.28 71.98 0.45 2.49 16 12 C 0.08 2.23 6.11 86.30 0.53 2.76 16 13 N -0.70 -20.15 5.96 -513.88 -3.06 -23.21 16 14 C 0.07 1.47 5.07 86.30 0.44 1.90 16 15 C -0.08 -1.64 2.33 -10.80 -0.03 -1.66 16 16 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 17 C -0.10 -2.14 5.09 30.59 0.16 -1.98 16 18 C -0.12 -2.44 5.92 30.59 0.18 -2.26 16 19 C -0.10 -1.82 5.10 30.59 0.16 -1.66 16 20 C -0.09 -1.50 2.42 -10.81 -0.03 -1.53 16 21 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 22 C 0.08 1.08 6.43 71.98 0.46 1.55 16 23 O -0.59 -9.14 13.19 -148.98 -1.97 -11.10 16 24 C -0.10 -1.55 4.48 30.58 0.14 -1.41 16 25 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 26 H -0.02 -0.98 8.14 -2.38 -0.02 -1.00 16 27 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 28 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.34 11.50 8.29 -89.70 -0.74 10.76 16 33 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.05 1.42 7.75 -2.39 -0.02 1.40 16 36 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.06 1.11 7.82 -2.39 -0.02 1.09 16 40 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 42 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.40 2.34 9.12 -74.06 -0.68 1.66 16 44 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 Total: -1.00 -68.60 358.62 -1.09 -69.69 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -0.48 Total: 17.18 kcal Atomic # 6 Polarization: -24.96 SS G_CDS: 3.57 Total: -21.39 kcal Atomic # 7 Polarization: -76.88 SS G_CDS: -2.78 Total: -79.66 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -3.43 Total: -32.66 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -68.60 -1.09 -69.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385211678.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.830 kcal (2) G-P(sol) polarization free energy of solvation -68.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds