Wall clock time and date at job start Mon Mar 30 2020 05:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42899 * 109.46876 * 179.72213 * 9 7 2 11 11 C 1.42901 * 113.99607 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46804 * 179.97438 * 11 10 9 13 13 O 1.42905 * 109.46607 * 65.00238 * 12 11 10 14 14 C 1.42901 * 113.99664 * 179.97438 * 13 12 11 15 15 C 1.53004 * 109.47016 * 179.97438 * 14 13 12 16 16 H 1.08997 * 109.46388 * 55.00494 * 15 14 13 17 17 C 1.52997 * 109.47253 * 295.00794 * 15 14 13 18 18 C 1.53010 * 109.47054 * 299.99702 * 17 15 14 19 19 C 1.53003 * 109.46942 * 300.00236 * 18 17 15 20 20 C 1.53002 * 109.47108 * 59.99954 * 19 18 17 21 21 C 1.52995 * 109.47271 * 299.99809 * 20 19 18 22 22 H 1.09003 * 109.47082 * 300.00158 * 21 20 19 23 23 C 1.53002 * 109.47271 * 179.97438 * 21 20 19 24 24 N 1.46904 * 109.46991 * 64.99826 * 23 21 20 25 25 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 27 27 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 28 28 H 1.08995 * 109.47224 * 300.00085 * 11 10 9 29 29 H 1.09001 * 109.47248 * 60.00362 * 11 10 9 30 30 H 1.08997 * 109.46956 * 184.99881 * 12 11 10 31 31 H 1.08995 * 109.47420 * 305.00237 * 12 11 10 32 32 H 1.08990 * 109.47525 * 300.00333 * 14 13 12 33 33 H 1.09009 * 109.46372 * 60.00263 * 14 13 12 34 34 H 1.08996 * 109.47610 * 59.99474 * 17 15 14 35 35 H 1.09003 * 109.47068 * 179.97438 * 17 15 14 36 36 H 1.08998 * 109.46737 * 180.02562 * 18 17 15 37 37 H 1.08994 * 109.46799 * 60.00119 * 18 17 15 38 38 H 1.08998 * 109.46882 * 300.00218 * 19 18 17 39 39 H 1.08998 * 109.46819 * 179.97438 * 19 18 17 40 40 H 1.09002 * 109.46930 * 179.97438 * 20 19 18 41 41 H 1.09003 * 109.47197 * 59.99897 * 20 19 18 42 42 H 1.08997 * 109.47185 * 185.00210 * 23 21 20 43 43 H 1.09000 * 109.46665 * 305.00076 * 23 21 20 44 44 H 1.00902 * 110.99720 * 179.97438 * 24 23 21 45 45 H 1.00893 * 110.99711 * 303.95838 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 2.1795 -3.5854 -0.0101 11 6 1.5649 -4.8754 -0.0153 12 6 2.6478 -5.9563 -0.0207 13 8 3.3879 -5.8950 1.2002 14 6 4.4296 -6.8684 1.2978 15 6 5.1514 -6.7102 2.6376 16 1 4.4265 -6.7665 3.4496 17 6 5.8590 -5.3543 2.6788 18 6 6.8766 -5.2753 1.5389 19 6 7.9082 -6.3940 1.6976 20 6 7.2005 -7.7499 1.6564 21 6 6.1830 -7.8290 2.7963 22 1 6.6972 -7.7163 3.7508 23 6 5.4748 -9.1846 2.7547 24 7 6.4460 -10.2529 3.0259 25 1 -0.4850 0.8401 -0.0004 26 1 0.6242 -2.5609 0.8844 27 1 0.6244 -2.5529 -0.8956 28 1 0.9449 -4.9861 0.8743 29 1 0.9445 -4.9787 -0.9056 30 1 2.1817 -6.9371 -0.1143 31 1 3.3209 -5.7921 -0.8622 32 1 4.0002 -7.8679 1.2318 33 1 5.1397 -6.7233 0.4836 34 1 5.1242 -4.5573 2.5657 35 1 6.3729 -5.2415 3.6335 36 1 7.3810 -4.3095 1.5685 37 1 6.3624 -5.3879 0.5845 38 1 8.4223 -6.2814 2.6521 39 1 8.6328 -6.3380 0.8853 40 1 7.9355 -8.5469 1.7691 41 1 6.6863 -7.8626 0.7019 42 1 4.6892 -9.2075 3.5099 43 1 5.0354 -9.3348 1.7686 44 1 6.0024 -11.1589 3.0044 45 1 7.2182 -10.2125 2.3778 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385258099.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:28 Heat of formation + Delta-G solvation = -124.742436 kcal Electronic energy + Delta-G solvation = -21595.127307 eV Core-core repulsion = 18418.391432 eV Total energy + Delta-G solvation = -3176.735875 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.87523 -37.51380 -36.14399 -34.78960 -32.72228 -31.69095 -30.29397 -29.43771 -26.85320 -25.71605 -24.76305 -22.39925 -22.25809 -21.83995 -21.02921 -18.66314 -16.81141 -16.42814 -16.36126 -16.11292 -15.42170 -15.22467 -14.79416 -14.47586 -14.31982 -14.11547 -13.79770 -13.64931 -13.44747 -13.10849 -12.58359 -12.30261 -12.11440 -11.81659 -11.59630 -11.44542 -11.38254 -11.12183 -10.98444 -10.81500 -10.72998 -10.50685 -10.15317 -10.10949 -10.00020 -9.92924 -9.32315 -9.06260 -8.92582 -8.79482 -8.13396 -6.07762 -4.08885 3.32588 3.37358 3.43436 3.85923 4.24464 4.37644 4.55731 4.60647 4.69313 4.89070 5.00802 5.08973 5.18730 5.23994 5.28722 5.31842 5.37531 5.43602 5.48762 5.53990 5.59273 5.61354 5.67484 5.72124 5.89959 5.94344 6.03304 6.05680 6.05948 6.11133 6.23190 6.26299 6.33001 6.48203 6.54147 6.81608 7.10297 7.13183 7.46135 7.50312 7.83330 8.19091 8.62174 9.04798 9.55689 11.03969 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.025513 B = 0.003579 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.233908 B = 7821.627102 C = 8583.244822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.512 4.512 8 H 0.066 0.934 9 C 0.194 3.806 10 O -0.388 6.388 11 C 0.064 3.936 12 C 0.069 3.931 13 O -0.370 6.370 14 C 0.060 3.940 15 C -0.077 4.077 16 H 0.078 0.922 17 C -0.112 4.112 18 C -0.122 4.122 19 C -0.117 4.117 20 C -0.118 4.118 21 C -0.078 4.078 22 H 0.083 0.917 23 C 0.061 3.939 24 N -0.852 5.852 25 H 0.263 0.737 26 H 0.005 0.995 27 H 0.004 0.996 28 H 0.045 0.955 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.040 0.960 33 H 0.051 0.949 34 H 0.080 0.920 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.073 0.927 43 H 0.029 0.971 44 H 0.339 0.661 45 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.364 -19.381 3.182 23.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.550 4.550 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.308 6.308 11 C -0.014 4.014 12 C -0.007 4.007 13 O -0.289 6.289 14 C -0.016 4.016 15 C -0.096 4.096 16 H 0.096 0.904 17 C -0.149 4.149 18 C -0.160 4.160 19 C -0.155 4.155 20 C -0.156 4.156 21 C -0.097 4.097 22 H 0.102 0.898 23 C -0.070 4.070 24 N -0.382 5.382 25 H 0.073 0.927 26 H 0.023 0.977 27 H 0.021 0.979 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.047 0.953 44 H 0.151 0.849 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 12.455 -18.734 4.040 22.857 hybrid contribution -0.271 0.271 -1.258 1.315 sum 12.184 -18.464 2.783 22.296 Atomic orbital electron populations 1.69968 1.06107 1.27095 1.50759 1.24953 0.94978 0.99423 0.95218 0.86337 0.79720 0.82264 0.78184 1.20509 1.21088 1.19577 1.21064 0.94080 0.89346 1.50532 0.91538 1.20202 0.88807 0.83705 0.95292 1.87914 1.35104 1.12606 1.95145 1.22248 0.93723 0.85701 0.99702 1.22530 0.93976 0.96981 0.87257 1.88021 1.47166 1.55724 1.38014 1.22690 0.89851 0.91214 0.97892 1.21064 0.96301 0.95258 0.97016 0.90386 1.21485 0.98274 0.97041 0.98120 1.21575 0.96689 0.98180 0.99540 1.21525 0.97805 0.94575 1.01595 1.21648 0.97937 0.97580 0.98408 1.21166 0.95748 0.92891 0.99874 0.89838 1.21953 0.94509 0.91212 0.99294 1.58751 1.13094 1.06630 1.59769 0.92699 0.97675 0.97855 0.93719 0.93161 0.93158 0.93007 0.94163 0.93068 0.90162 0.92305 0.91942 0.91633 0.92059 0.92320 0.92132 0.92147 0.90887 0.95325 0.84867 0.84779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 22.22 29.54 -169.99 -5.02 17.20 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.51 -15.48 9.43 -34.44 -0.32 -15.80 16 8 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 9 C 0.19 5.50 5.69 36.01 0.20 5.71 16 10 O -0.39 -9.82 10.29 -40.09 -0.41 -10.23 16 11 C 0.06 1.24 6.32 37.16 0.23 1.48 16 12 C 0.07 1.10 6.32 37.16 0.23 1.33 16 13 O -0.37 -6.26 9.84 -40.09 -0.39 -6.66 16 14 C 0.06 0.76 4.39 37.16 0.16 0.93 16 15 C -0.08 -0.90 2.43 -90.62 -0.22 -1.12 16 16 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 17 C -0.11 -1.43 5.35 -26.73 -0.14 -1.57 16 18 C -0.12 -1.45 5.65 -26.72 -0.15 -1.60 16 19 C -0.12 -1.12 5.92 -26.73 -0.16 -1.27 16 20 C -0.12 -1.03 4.70 -26.73 -0.13 -1.15 16 21 C -0.08 -0.73 2.17 -90.62 -0.20 -0.93 16 22 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 23 C 0.06 0.52 5.75 -3.82 -0.02 0.50 16 24 N -0.85 -6.36 9.62 -10.37 -0.10 -6.46 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 27 H 0.00 0.11 8.14 -51.93 -0.42 -0.32 16 28 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.04 0.45 6.28 -51.93 -0.33 0.12 16 33 H 0.05 0.64 4.83 -51.92 -0.25 0.39 16 34 H 0.08 1.27 7.82 -51.93 -0.41 0.87 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.85 6.32 -51.93 -0.33 0.52 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.45 6.68 -51.93 -0.35 0.11 16 41 H 0.06 0.54 6.54 -51.93 -0.34 0.20 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.03 0.24 6.59 -51.93 -0.34 -0.10 16 44 H 0.34 2.01 9.08 -39.29 -0.36 1.66 16 45 H 0.34 2.20 7.25 -39.30 -0.28 1.92 16 LS Contribution 346.85 15.07 5.23 5.23 Total: -1.00 -32.44 346.85 -8.59 -41.03 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -8.02 Total: -1.48 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -0.60 Total: -11.98 kcal Atomic # 7 Polarization: -33.75 SS G_CDS: 0.64 Total: -33.11 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.81 Total: -16.89 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.44 -8.59 -41.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385258099.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.710 kcal (2) G-P(sol) polarization free energy of solvation -32.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds