Wall clock time and date at job start Mon Mar 30 2020 05:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42899 * 109.46876 * 179.72213 * 9 7 2 11 11 C 1.42901 * 113.99607 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46804 * 179.97438 * 11 10 9 13 13 O 1.42905 * 109.46607 * 65.00238 * 12 11 10 14 14 C 1.42901 * 113.99664 * 179.97438 * 13 12 11 15 15 C 1.53004 * 109.47016 * 179.97438 * 14 13 12 16 16 H 1.08997 * 109.46388 * 55.00494 * 15 14 13 17 17 C 1.52997 * 109.47253 * 295.00794 * 15 14 13 18 18 C 1.53010 * 109.47054 * 299.99702 * 17 15 14 19 19 C 1.53003 * 109.46942 * 300.00236 * 18 17 15 20 20 C 1.53002 * 109.47108 * 59.99954 * 19 18 17 21 21 C 1.52995 * 109.47271 * 299.99809 * 20 19 18 22 22 H 1.09003 * 109.47082 * 300.00158 * 21 20 19 23 23 C 1.53002 * 109.47271 * 179.97438 * 21 20 19 24 24 N 1.46904 * 109.46991 * 64.99826 * 23 21 20 25 25 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 27 27 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 28 28 H 1.08995 * 109.47224 * 300.00085 * 11 10 9 29 29 H 1.09001 * 109.47248 * 60.00362 * 11 10 9 30 30 H 1.08997 * 109.46956 * 184.99881 * 12 11 10 31 31 H 1.08995 * 109.47420 * 305.00237 * 12 11 10 32 32 H 1.08990 * 109.47525 * 300.00333 * 14 13 12 33 33 H 1.09009 * 109.46372 * 60.00263 * 14 13 12 34 34 H 1.08996 * 109.47610 * 59.99474 * 17 15 14 35 35 H 1.09003 * 109.47068 * 179.97438 * 17 15 14 36 36 H 1.08998 * 109.46737 * 180.02562 * 18 17 15 37 37 H 1.08994 * 109.46799 * 60.00119 * 18 17 15 38 38 H 1.08998 * 109.46882 * 300.00218 * 19 18 17 39 39 H 1.08998 * 109.46819 * 179.97438 * 19 18 17 40 40 H 1.09002 * 109.46930 * 179.97438 * 20 19 18 41 41 H 1.09003 * 109.47197 * 59.99897 * 20 19 18 42 42 H 1.08997 * 109.47185 * 185.00210 * 23 21 20 43 43 H 1.09000 * 109.46665 * 305.00076 * 23 21 20 44 44 H 1.00902 * 110.99720 * 179.97438 * 24 23 21 45 45 H 1.00893 * 110.99711 * 303.95838 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 2.1795 -3.5854 -0.0101 11 6 1.5649 -4.8754 -0.0153 12 6 2.6478 -5.9563 -0.0207 13 8 3.3879 -5.8950 1.2002 14 6 4.4296 -6.8684 1.2978 15 6 5.1514 -6.7102 2.6376 16 1 4.4265 -6.7665 3.4496 17 6 5.8590 -5.3543 2.6788 18 6 6.8766 -5.2753 1.5389 19 6 7.9082 -6.3940 1.6976 20 6 7.2005 -7.7499 1.6564 21 6 6.1830 -7.8290 2.7963 22 1 6.6972 -7.7163 3.7508 23 6 5.4748 -9.1846 2.7547 24 7 6.4460 -10.2529 3.0259 25 1 -0.4850 0.8401 -0.0004 26 1 0.6242 -2.5609 0.8844 27 1 0.6244 -2.5529 -0.8956 28 1 0.9449 -4.9861 0.8743 29 1 0.9445 -4.9787 -0.9056 30 1 2.1817 -6.9371 -0.1143 31 1 3.3209 -5.7921 -0.8622 32 1 4.0002 -7.8679 1.2318 33 1 5.1397 -6.7233 0.4836 34 1 5.1242 -4.5573 2.5657 35 1 6.3729 -5.2415 3.6335 36 1 7.3810 -4.3095 1.5685 37 1 6.3624 -5.3879 0.5845 38 1 8.4223 -6.2814 2.6521 39 1 8.6328 -6.3380 0.8853 40 1 7.9355 -8.5469 1.7691 41 1 6.6863 -7.8626 0.7019 42 1 4.6892 -9.2075 3.5099 43 1 5.0354 -9.3348 1.7686 44 1 6.0024 -11.1589 3.0044 45 1 7.2182 -10.2125 2.3778 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385258099.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:27 Heat of formation + Delta-G solvation = -147.262918 kcal Electronic energy + Delta-G solvation = -21596.103868 eV Core-core repulsion = 18418.391432 eV Total energy + Delta-G solvation = -3177.712436 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.78839 -38.99324 -37.76311 -35.52042 -34.94830 -32.68356 -31.11718 -30.94443 -28.92923 -26.75452 -25.54838 -24.56253 -23.41776 -23.05746 -21.86414 -19.57936 -18.67322 -17.93041 -17.70062 -17.17393 -16.70323 -16.42145 -16.34359 -15.81775 -15.61612 -15.44244 -14.98191 -14.74348 -14.42278 -14.21051 -13.84497 -13.69071 -13.37338 -13.09382 -12.94590 -12.88989 -12.70437 -12.60999 -12.28929 -12.28592 -11.97655 -11.90145 -11.79974 -11.32045 -11.08567 -10.99087 -10.89787 -10.84791 -10.42979 -10.26164 -9.53113 -8.34071 -6.46541 1.38190 1.41530 1.53791 2.33555 2.73348 2.99436 3.17063 3.56715 3.71420 3.80254 3.91523 4.11058 4.18284 4.23304 4.25905 4.32112 4.40270 4.45303 4.48394 4.56253 4.59574 4.61781 4.69990 4.73221 4.74992 4.79224 4.86253 4.96314 5.09670 5.10689 5.15009 5.20433 5.28307 5.33642 5.39861 5.52221 5.52706 5.57404 5.93875 6.26507 6.34428 6.52330 6.63502 6.80101 7.25340 8.78491 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.025513 B = 0.003579 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.233908 B = 7821.627102 C = 8583.244822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.006 3.994 3 Si 0.984 3.016 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.266 1.266 7 C -0.550 4.550 8 H 0.059 0.941 9 C 0.209 3.791 10 O -0.407 6.407 11 C 0.051 3.949 12 C 0.075 3.925 13 O -0.404 6.404 14 C 0.059 3.941 15 C -0.075 4.075 16 H 0.068 0.932 17 C -0.111 4.111 18 C -0.122 4.122 19 C -0.112 4.112 20 C -0.115 4.115 21 C -0.068 4.068 22 H 0.080 0.920 23 C 0.065 3.935 24 N -0.857 5.857 25 H 0.272 0.728 26 H -0.017 1.017 27 H -0.010 1.010 28 H 0.041 0.959 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.038 0.962 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.051 0.949 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.033 0.967 44 H 0.349 0.651 45 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.854 -20.397 2.926 24.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.192 4.192 3 Si 0.807 3.193 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.190 1.190 7 C -0.587 4.587 8 H 0.077 0.923 9 C 0.134 3.866 10 O -0.327 6.327 11 C -0.026 4.026 12 C -0.002 4.002 13 O -0.324 6.324 14 C -0.017 4.017 15 C -0.094 4.094 16 H 0.086 0.914 17 C -0.149 4.149 18 C -0.159 4.159 19 C -0.150 4.150 20 C -0.152 4.152 21 C -0.087 4.087 22 H 0.098 0.902 23 C -0.066 4.066 24 N -0.388 5.388 25 H 0.080 0.920 26 H 0.000 1.000 27 H 0.008 0.992 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.110 0.890 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.051 0.949 44 H 0.162 0.838 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 13.945 -19.789 3.779 24.502 hybrid contribution -0.775 0.511 -1.152 1.479 sum 13.170 -19.278 2.628 23.495 Atomic orbital electron populations 1.70069 1.07744 1.28713 1.50433 1.25982 0.96011 1.03413 0.93819 0.85172 0.78317 0.76890 0.78971 1.19008 1.19712 1.19040 1.21379 0.94011 0.90932 1.52393 0.92278 1.19832 0.88623 0.84749 0.93436 1.87869 1.35326 1.14262 1.95201 1.22651 0.95522 0.83996 1.00405 1.22527 0.93264 0.97267 0.87099 1.87982 1.48421 1.57595 1.38427 1.22868 0.89116 0.91277 0.98404 1.21057 0.96587 0.95461 0.96307 0.91402 1.21439 0.97744 0.96623 0.99103 1.21553 0.96959 0.99150 0.98256 1.21491 0.97200 0.93928 1.02361 1.21640 0.98046 0.97583 0.97952 1.21055 0.95129 0.92466 1.00065 0.90189 1.21845 0.94475 0.90916 0.99351 1.58709 1.13159 1.06894 1.60072 0.91956 0.99950 0.99248 0.94039 0.91362 0.88983 0.92778 0.91961 0.92713 0.94265 0.91389 0.92616 0.93057 0.91481 0.91199 0.90152 0.92122 0.91538 0.94851 0.83775 0.83993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.18 13.29 21.45 0.28 -56.90 16 2 C 0.01 0.37 5.46 84.66 0.46 0.83 16 3 Si 0.98 45.52 29.54 68.60 2.03 47.54 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.55 -34.12 9.43 25.60 0.24 -33.88 16 8 H 0.06 3.66 7.81 -2.91 -0.02 3.63 16 9 C 0.21 12.29 5.69 71.24 0.41 12.70 16 10 O -0.41 -21.27 10.29 -144.34 -1.49 -22.76 16 11 C 0.05 2.00 6.32 71.98 0.45 2.46 16 12 C 0.07 2.30 6.32 71.98 0.45 2.76 16 13 O -0.40 -13.72 9.84 -144.34 -1.42 -15.14 16 14 C 0.06 1.45 4.39 71.98 0.32 1.76 16 15 C -0.08 -1.72 2.43 -10.79 -0.03 -1.75 16 16 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 17 C -0.11 -2.94 5.35 30.60 0.16 -2.77 16 18 C -0.12 -2.89 5.65 30.60 0.17 -2.72 16 19 C -0.11 -1.94 5.92 30.60 0.18 -1.76 16 20 C -0.11 -1.72 4.70 30.59 0.14 -1.57 16 21 C -0.07 -1.16 2.17 -10.79 -0.02 -1.19 16 22 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 23 C 0.06 0.96 5.75 86.30 0.50 1.46 16 24 N -0.86 -10.58 9.62 -186.71 -1.80 -12.37 16 25 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 26 H -0.02 -1.07 8.14 -2.38 -0.02 -1.09 16 27 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 28 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.06 1.25 6.28 -2.39 -0.02 1.23 16 33 H 0.05 1.30 4.83 -2.38 -0.01 1.29 16 34 H 0.04 1.33 7.82 -2.39 -0.02 1.31 16 35 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.05 1.35 6.32 -2.39 -0.02 1.33 16 38 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.07 1.07 8.14 -2.39 -0.02 1.06 16 40 H 0.08 0.93 6.68 -2.39 -0.02 0.92 16 41 H 0.06 0.93 6.54 -2.39 -0.02 0.92 16 42 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 43 H 0.03 0.47 6.59 -2.39 -0.02 0.45 16 44 H 0.35 3.27 9.08 -89.69 -0.81 2.46 16 45 H 0.35 3.45 7.25 -89.70 -0.65 2.80 16 Total: -1.00 -71.18 346.85 0.55 -70.63 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -0.50 Total: 12.67 kcal Atomic # 6 Polarization: -27.11 SS G_CDS: 3.44 Total: -23.67 kcal Atomic # 7 Polarization: -67.76 SS G_CDS: -1.51 Total: -69.27 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: -2.91 Total: -37.90 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal Total: -71.18 0.55 -70.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385258099.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.634 kcal (2) G-P(sol) polarization free energy of solvation -71.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds