Wall clock time and date at job start Mon Mar 30 2020 05:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34231 * 117.00317 * 2 1 4 4 O 1.20830 * 119.99608 * 0.02562 * 3 2 1 5 5 C 1.50690 * 120.00562 * 179.97438 * 3 2 1 6 6 H 1.09008 * 109.53812 * 31.89267 * 5 3 2 7 7 C 1.53099 * 109.51045 * 271.78375 * 5 3 2 8 8 O 1.43013 * 109.25700 * 183.21417 * 7 5 3 9 9 C 1.43013 * 113.73973 * 58.67169 * 8 7 5 10 10 C 1.53100 * 109.25787 * 301.32513 * 9 8 7 11 11 N 1.47015 * 109.50757 * 151.99450 * 5 3 2 12 12 C 1.46893 * 111.00197 * 302.33084 * 11 5 3 13 13 C 1.53007 * 109.46953 * 163.76930 * 12 11 5 14 14 C 1.53000 * 109.47124 * 180.02562 * 13 12 11 15 15 C 1.52993 * 109.47180 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47364 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99793 * 359.97438 * 16 15 14 18 18 C 1.37882 * 120.00224 * 180.02562 * 16 15 14 19 19 N 1.31509 * 119.99878 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99959 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47163 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47172 * 119.99692 * 20 18 16 23 23 H 1.48498 * 109.47320 * 239.99815 * 20 18 16 24 24 H 1.08996 * 109.46863 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46512 * 299.99584 * 1 2 3 26 26 H 1.08990 * 109.47201 * 59.99628 * 1 2 3 27 27 H 1.09002 * 109.50607 * 63.27891 * 7 5 3 28 28 H 1.08995 * 109.50514 * 303.14775 * 7 5 3 29 29 H 1.09000 * 109.50689 * 61.26233 * 9 8 7 30 30 H 1.09005 * 109.50965 * 181.39105 * 9 8 7 31 31 H 1.09001 * 109.50646 * 176.78247 * 10 9 8 32 32 H 1.09000 * 109.50472 * 296.87233 * 10 9 8 33 33 H 1.08994 * 109.47288 * 283.76617 * 12 11 5 34 34 H 1.08996 * 109.47437 * 43.77426 * 12 11 5 35 35 H 1.09003 * 109.47010 * 300.00157 * 13 12 11 36 36 H 1.08997 * 109.47078 * 60.00317 * 13 12 11 37 37 H 1.08998 * 109.47157 * 300.00678 * 14 13 12 38 38 H 1.08997 * 109.46900 * 60.00188 * 14 13 12 39 39 H 1.09002 * 109.47357 * 299.99864 * 15 14 13 40 40 H 1.08997 * 109.47152 * 60.00218 * 15 14 13 41 41 H 0.97006 * 119.99833 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9762 0.4229 -0.5418 7 6 4.0787 1.2571 1.4432 8 8 5.5009 1.4077 1.4405 9 6 5.9511 2.6123 0.8149 10 6 5.4578 2.6438 -0.6340 11 7 3.9927 2.5223 -0.6502 12 6 3.4727 2.6051 -2.0215 13 6 3.5794 4.0474 -2.5211 14 6 3.0372 4.1338 -3.9492 15 6 3.1445 5.5758 -4.4491 16 6 2.6099 5.6611 -5.8554 17 1 2.2318 4.7753 -6.3440 18 6 2.6044 6.8699 -6.5188 19 7 3.0652 7.9484 -5.9240 20 14 1.9423 6.9754 -8.2623 21 1 1.4874 5.6317 -8.7012 22 1 0.7993 7.9226 -8.3013 23 1 3.0144 7.4557 -9.1707 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 3.8139 0.3093 1.9118 28 1 3.6269 2.0780 2.0000 29 1 5.5537 3.4726 1.3536 30 1 7.0406 2.6447 0.8292 31 1 5.7499 3.5861 -1.0976 32 1 5.8986 1.8142 -1.1867 33 1 4.0550 1.9516 -2.6710 34 1 2.4285 2.2928 -2.0336 35 1 2.9971 4.7009 -1.8716 36 1 4.6236 4.3597 -2.5091 37 1 3.6190 3.4801 -4.5990 38 1 1.9929 3.8216 -3.9608 39 1 2.5628 6.2298 -3.7994 40 1 4.1889 5.8876 -4.4375 41 1 3.0610 8.7989 -6.3906 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385784311.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:12 Heat of formation + Delta-G solvation = -134.533447 kcal Electronic energy + Delta-G solvation = -21361.225165 eV Core-core repulsion = 18048.231625 eV Total energy + Delta-G solvation = -3312.993539 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.05351 -39.40584 -36.89358 -36.19831 -34.24304 -32.38421 -31.81538 -29.38113 -28.06756 -26.75664 -25.05468 -24.14244 -22.04607 -21.42087 -20.23237 -19.95536 -17.98779 -17.18444 -17.01001 -16.22067 -16.09872 -15.99403 -15.44275 -14.96123 -14.50625 -14.46332 -14.19059 -14.02433 -13.43571 -13.08683 -12.59925 -12.52735 -12.27660 -12.09334 -11.77881 -11.66174 -11.45986 -11.09081 -10.94659 -10.93093 -10.59314 -10.48849 -10.43642 -10.33160 -9.96416 -9.59692 -9.24715 -8.98234 -8.54711 -8.31070 -5.96031 -3.98044 1.96965 2.33098 3.32894 3.40001 3.42408 3.44671 3.69168 4.41815 4.49043 4.52112 4.69933 4.74540 4.89748 4.94440 4.98744 5.04137 5.26404 5.31514 5.33032 5.39458 5.40659 5.49561 5.61031 5.70311 5.83435 6.11388 6.12702 6.16033 6.48605 6.69660 6.76412 6.80385 6.90508 7.01213 7.21751 7.59600 7.73315 7.89294 8.05192 8.48127 9.09502 9.65679 11.15394 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.021486 B = 0.003784 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.874601 B = 7396.919085 C = 8404.210210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.463 3.537 4 O -0.472 6.472 5 C 0.057 3.943 6 H 0.081 0.919 7 C 0.079 3.921 8 O -0.377 6.377 9 C 0.059 3.941 10 C 0.019 3.981 11 N -0.519 5.519 12 C 0.052 3.948 13 C -0.107 4.107 14 C -0.109 4.109 15 C 0.022 3.978 16 C -0.519 4.519 17 H 0.054 0.946 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.102 0.898 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.107 0.893 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.047 0.953 33 H 0.037 0.963 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.044 0.956 38 H 0.046 0.954 39 H 0.016 0.984 40 H 0.015 0.985 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.916 -16.919 15.888 23.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.280 6.280 3 C 0.303 3.697 4 O -0.356 6.356 5 C -0.053 4.053 6 H 0.099 0.901 7 C 0.001 3.999 8 O -0.295 6.295 9 C -0.018 4.018 10 C -0.109 4.109 11 N -0.246 5.246 12 C -0.075 4.075 13 C -0.145 4.145 14 C -0.147 4.147 15 C -0.015 4.015 16 C -0.557 4.557 17 H 0.072 0.928 18 C -0.145 4.145 19 N -0.535 5.535 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.120 0.880 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.125 0.875 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.035 0.965 40 H 0.033 0.967 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.628 -16.177 16.212 22.960 hybrid contribution -0.499 -0.226 -1.717 1.802 sum 1.129 -16.403 14.495 21.918 Atomic orbital electron populations 1.23294 0.75926 1.03729 1.02894 1.86490 1.23732 1.33386 1.84354 1.23263 0.91271 0.81675 0.73532 1.90740 1.66397 1.36001 1.42446 1.21913 0.88479 0.94925 0.99951 0.90081 1.22515 0.82051 1.03341 0.91968 1.88018 1.20358 1.41982 1.79105 1.22812 0.99918 0.87402 0.91680 1.22912 0.86575 1.03406 0.97959 1.62118 1.10549 1.31787 1.20129 1.22395 0.99688 0.99682 0.85712 1.21595 1.01344 0.93595 0.97985 1.21597 0.99204 1.01087 0.92811 1.19084 0.97074 0.89780 0.95602 1.21323 1.40709 0.94258 0.99454 0.92763 1.25029 0.95561 0.95889 0.98036 1.69981 1.46873 0.99399 1.37278 0.86560 0.78663 0.78022 0.84903 1.19792 1.21014 1.21036 0.88008 0.91770 0.91586 0.87539 0.91305 0.91632 0.87826 0.87988 0.93457 0.94520 0.91034 0.91356 0.92526 0.93712 0.93543 0.96548 0.96690 0.93116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.56 101.05 1.07 1.37 16 2 O -0.36 -4.01 10.57 -39.26 -0.41 -4.42 16 3 C 0.46 6.01 5.86 36.00 0.21 6.22 16 4 O -0.47 -7.68 15.35 -18.75 -0.29 -7.96 16 5 C 0.06 0.67 2.49 -68.76 -0.17 0.50 16 6 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 7 C 0.08 0.79 6.27 37.21 0.23 1.02 16 8 O -0.38 -4.05 10.83 -35.23 -0.38 -4.43 16 9 C 0.06 0.57 7.01 37.21 0.26 0.83 16 10 C 0.02 0.21 5.47 -3.71 -0.02 0.19 16 11 N -0.52 -7.01 4.23 -227.73 -0.96 -7.97 16 12 C 0.05 0.80 4.64 -3.82 -0.02 0.78 16 13 C -0.11 -1.93 5.27 -26.73 -0.14 -2.08 16 14 C -0.11 -2.34 5.15 -26.73 -0.14 -2.47 16 15 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 16 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 17 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -27.54 13.29 55.43 0.74 -26.80 16 20 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 21 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 24 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 26 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 27 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.10 1.16 6.66 -51.93 -0.35 0.81 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.04 0.53 8.04 -51.93 -0.42 0.11 16 34 H 0.07 1.18 5.97 -51.93 -0.31 0.87 16 35 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.06 0.98 6.75 -51.93 -0.35 0.63 16 37 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 334.80 15.07 5.05 5.05 Total: -1.00 -33.57 334.80 -7.43 -41.00 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -6.88 Total: -4.38 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: 0.73 Total: -7.13 kcal Atomic # 7 Polarization: -34.55 SS G_CDS: -0.23 Total: -34.78 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -1.08 Total: -16.82 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.57 -7.43 -41.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385784311.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.531 kcal (2) G-P(sol) polarization free energy of solvation -33.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds