Wall clock time and date at job start Mon Mar 30 2020 05:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34231 * 117.00317 * 2 1 4 4 O 1.20830 * 119.99608 * 0.02562 * 3 2 1 5 5 C 1.50690 * 120.00562 * 179.97438 * 3 2 1 6 6 H 1.09008 * 109.53812 * 31.89267 * 5 3 2 7 7 C 1.53099 * 109.51045 * 271.78375 * 5 3 2 8 8 O 1.43013 * 109.25700 * 183.21417 * 7 5 3 9 9 C 1.43013 * 113.73973 * 58.67169 * 8 7 5 10 10 C 1.53100 * 109.25787 * 301.32513 * 9 8 7 11 11 N 1.47015 * 109.50757 * 151.99450 * 5 3 2 12 12 C 1.46893 * 111.00197 * 302.33084 * 11 5 3 13 13 C 1.53007 * 109.46953 * 163.76930 * 12 11 5 14 14 C 1.53000 * 109.47124 * 180.02562 * 13 12 11 15 15 C 1.52993 * 109.47180 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47364 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99793 * 359.97438 * 16 15 14 18 18 C 1.37882 * 120.00224 * 180.02562 * 16 15 14 19 19 N 1.31509 * 119.99878 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99959 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47163 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47172 * 119.99692 * 20 18 16 23 23 H 1.48498 * 109.47320 * 239.99815 * 20 18 16 24 24 H 1.08996 * 109.46863 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46512 * 299.99584 * 1 2 3 26 26 H 1.08990 * 109.47201 * 59.99628 * 1 2 3 27 27 H 1.09002 * 109.50607 * 63.27891 * 7 5 3 28 28 H 1.08995 * 109.50514 * 303.14775 * 7 5 3 29 29 H 1.09000 * 109.50689 * 61.26233 * 9 8 7 30 30 H 1.09005 * 109.50965 * 181.39105 * 9 8 7 31 31 H 1.09001 * 109.50646 * 176.78247 * 10 9 8 32 32 H 1.09000 * 109.50472 * 296.87233 * 10 9 8 33 33 H 1.08994 * 109.47288 * 283.76617 * 12 11 5 34 34 H 1.08996 * 109.47437 * 43.77426 * 12 11 5 35 35 H 1.09003 * 109.47010 * 300.00157 * 13 12 11 36 36 H 1.08997 * 109.47078 * 60.00317 * 13 12 11 37 37 H 1.08998 * 109.47157 * 300.00678 * 14 13 12 38 38 H 1.08997 * 109.46900 * 60.00188 * 14 13 12 39 39 H 1.09002 * 109.47357 * 299.99864 * 15 14 13 40 40 H 1.08997 * 109.47152 * 60.00218 * 15 14 13 41 41 H 0.97006 * 119.99833 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9762 0.4229 -0.5418 7 6 4.0787 1.2571 1.4432 8 8 5.5009 1.4077 1.4405 9 6 5.9511 2.6123 0.8149 10 6 5.4578 2.6438 -0.6340 11 7 3.9927 2.5223 -0.6502 12 6 3.4727 2.6051 -2.0215 13 6 3.5794 4.0474 -2.5211 14 6 3.0372 4.1338 -3.9492 15 6 3.1445 5.5758 -4.4491 16 6 2.6099 5.6611 -5.8554 17 1 2.2318 4.7753 -6.3440 18 6 2.6044 6.8699 -6.5188 19 7 3.0652 7.9484 -5.9240 20 14 1.9423 6.9754 -8.2623 21 1 1.4874 5.6317 -8.7012 22 1 0.7993 7.9226 -8.3013 23 1 3.0144 7.4557 -9.1707 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 3.8139 0.3093 1.9118 28 1 3.6269 2.0780 2.0000 29 1 5.5537 3.4726 1.3536 30 1 7.0406 2.6447 0.8292 31 1 5.7499 3.5861 -1.0976 32 1 5.8986 1.8142 -1.1867 33 1 4.0550 1.9516 -2.6710 34 1 2.4285 2.2928 -2.0336 35 1 2.9971 4.7009 -1.8716 36 1 4.6236 4.3597 -2.5091 37 1 3.6190 3.4801 -4.5990 38 1 1.9929 3.8216 -3.9608 39 1 2.5628 6.2298 -3.7994 40 1 4.1889 5.8876 -4.4375 41 1 3.0610 8.7989 -6.3906 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385784311.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:11 Heat of formation + Delta-G solvation = -157.244563 kcal Electronic energy + Delta-G solvation = -21362.209993 eV Core-core repulsion = 18048.231625 eV Total energy + Delta-G solvation = -3313.978367 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.02081 -40.30056 -37.90326 -37.35294 -35.97399 -34.21767 -32.81399 -30.90053 -28.95711 -28.10508 -25.92484 -25.85183 -23.11151 -22.85965 -21.74099 -21.12997 -18.94407 -18.47293 -18.12562 -17.91115 -16.98570 -16.84972 -16.57558 -16.51227 -15.94676 -15.63755 -15.18520 -15.13655 -14.52394 -14.46695 -13.98290 -13.85807 -13.63292 -13.35451 -13.11907 -12.97025 -12.82241 -12.48077 -12.35000 -12.27474 -12.10273 -11.86717 -11.82913 -11.47370 -11.39417 -11.31910 -11.11602 -10.75048 -10.57572 -9.55202 -8.21381 -6.33060 0.97739 1.38315 1.39051 1.47265 1.52488 2.39106 2.49706 2.87173 3.11358 3.55950 3.62862 3.82563 3.86023 3.95713 4.13283 4.25843 4.26494 4.29459 4.30512 4.43239 4.49344 4.57321 4.59836 4.65538 4.68567 4.79038 4.88231 4.93074 5.14806 5.21089 5.22786 5.29326 5.51095 5.69911 5.72651 5.80410 5.84303 5.99435 6.23721 6.63715 6.83969 7.36289 8.90833 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.021486 B = 0.003784 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.874601 B = 7396.919085 C = 8404.210210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.359 6.359 3 C 0.466 3.534 4 O -0.513 6.513 5 C 0.058 3.942 6 H 0.096 0.904 7 C 0.082 3.918 8 O -0.381 6.381 9 C 0.060 3.940 10 C 0.017 3.983 11 N -0.536 5.536 12 C 0.065 3.935 13 C -0.096 4.096 14 C -0.096 4.096 15 C 0.025 3.975 16 C -0.545 4.545 17 H 0.059 0.941 18 C -0.002 4.002 19 N -0.934 5.934 20 Si 0.967 3.033 21 H -0.262 1.262 22 H -0.278 1.278 23 H -0.275 1.275 24 H 0.137 0.863 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.133 0.867 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.129 0.871 31 H 0.097 0.903 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.047 0.953 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.042 0.958 39 H -0.014 1.014 40 H -0.006 1.006 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.236 -18.826 15.653 24.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.275 6.275 3 C 0.308 3.692 4 O -0.400 6.400 5 C -0.052 4.052 6 H 0.114 0.886 7 C 0.005 3.995 8 O -0.299 6.299 9 C -0.016 4.016 10 C -0.110 4.110 11 N -0.263 5.263 12 C -0.063 4.063 13 C -0.134 4.134 14 C -0.134 4.134 15 C -0.012 4.012 16 C -0.583 4.583 17 H 0.077 0.923 18 C -0.199 4.199 19 N -0.574 5.574 20 Si 0.791 3.209 21 H -0.186 1.186 22 H -0.204 1.204 23 H -0.201 1.201 24 H 0.155 0.845 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.150 0.850 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.147 0.853 31 H 0.115 0.885 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.004 0.996 40 H 0.013 0.987 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.957 -18.117 15.992 24.244 hybrid contribution -0.617 0.362 -1.598 1.751 sum 1.339 -17.755 14.393 22.896 Atomic orbital electron populations 1.23578 0.74496 1.05938 1.02474 1.86489 1.25135 1.32222 1.83702 1.23557 0.91788 0.81568 0.72278 1.90727 1.67330 1.37373 1.44567 1.22033 0.87705 0.94419 1.01026 0.88602 1.22602 0.81719 1.04455 0.90751 1.88019 1.20546 1.42298 1.79058 1.22906 1.01333 0.87009 0.90361 1.22995 0.85163 1.03507 0.99288 1.61999 1.12048 1.33443 1.18837 1.22101 0.99394 0.97453 0.87320 1.21388 1.01035 0.95529 0.95412 1.21392 0.99439 0.97564 0.95015 1.18997 0.94972 0.92560 0.94718 1.21748 1.41176 0.94791 1.00599 0.92296 1.26016 0.95590 0.95359 1.02960 1.70112 1.47778 1.00114 1.39398 0.85372 0.78117 0.78519 0.78873 1.18602 1.20356 1.20068 0.84471 0.91583 0.92706 0.84962 0.92091 0.92074 0.85295 0.88503 0.92502 0.93149 0.92352 0.93435 0.91779 0.92632 0.93944 0.99592 0.98720 0.92728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.64 16 2 O -0.36 -7.41 10.57 -51.43 -0.54 -7.95 16 3 C 0.47 11.77 5.86 71.23 0.42 12.18 16 4 O -0.51 -16.88 15.35 21.95 0.34 -16.54 16 5 C 0.06 1.27 2.49 44.18 0.11 1.38 16 6 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 7 C 0.08 1.49 6.27 72.02 0.45 1.94 16 8 O -0.38 -7.31 10.83 -148.98 -1.61 -8.93 16 9 C 0.06 1.05 7.01 72.02 0.50 1.56 16 10 C 0.02 0.36 5.47 86.31 0.47 0.84 16 11 N -0.54 -14.03 4.23 -874.40 -3.69 -17.72 16 12 C 0.06 1.95 4.64 86.31 0.40 2.35 16 13 C -0.10 -3.50 5.27 30.60 0.16 -3.34 16 14 C -0.10 -4.18 5.15 30.59 0.16 -4.02 16 15 C 0.02 1.37 4.97 29.84 0.15 1.51 16 16 C -0.55 -32.26 9.11 25.60 0.23 -32.02 16 17 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 18 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 19 N -0.93 -58.36 13.29 21.45 0.28 -58.07 16 20 Si 0.97 45.25 29.54 68.60 2.03 47.28 16 21 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 22 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 23 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 24 H 0.14 1.13 8.14 -2.39 -0.02 1.12 16 25 H 0.07 1.02 8.13 -2.38 -0.02 1.00 16 26 H 0.05 0.99 8.13 -2.39 -0.02 0.97 16 27 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.13 1.58 8.14 -2.38 -0.02 1.56 16 31 H 0.10 2.11 6.66 -2.39 -0.02 2.10 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.05 1.37 8.04 -2.39 -0.02 1.35 16 34 H 0.06 1.92 5.97 -2.39 -0.01 1.90 16 35 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.06 2.23 6.75 -2.39 -0.02 2.21 16 37 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.04 1.85 8.14 -2.39 -0.02 1.84 16 39 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 40 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 41 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 Total: -1.00 -72.96 334.80 2.50 -70.46 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: 0.99 Total: 7.09 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: 4.72 Total: -15.62 kcal Atomic # 7 Polarization: -72.38 SS G_CDS: -3.41 Total: -75.79 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -1.82 Total: -33.42 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -72.96 2.50 -70.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385784311.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.784 kcal (2) G-P(sol) polarization free energy of solvation -72.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds