Wall clock time and date at job start Mon Mar 30 2020 05:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34223 * 117.00356 * 2 1 4 4 O 1.20824 * 120.00250 * 359.97438 * 3 2 1 5 5 C 1.50705 * 120.00321 * 180.02562 * 3 2 1 6 6 H 1.08993 * 109.54044 * 305.11299 * 5 3 2 7 7 C 1.53103 * 109.50416 * 65.21514 * 5 3 2 8 8 N 1.47017 * 109.25606 * 176.78487 * 7 5 3 9 9 C 1.46900 * 110.99765 * 177.61039 * 8 7 5 10 10 C 1.53001 * 109.46922 * 189.68430 * 9 8 7 11 11 C 1.53006 * 109.47115 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.46922 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.46890 * 179.97438 * 12 11 10 14 14 H 1.08007 * 119.99768 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00125 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99672 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00074 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47470 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47230 * 120.00079 * 17 15 13 20 20 H 1.48498 * 109.47138 * 240.00204 * 17 15 13 21 21 C 1.47014 * 110.75303 * 301.38548 * 8 7 5 22 22 C 1.53096 * 109.25675 * 58.61803 * 21 8 7 23 23 O 1.43010 * 109.51080 * 184.99811 * 5 3 2 24 24 H 1.09002 * 109.46855 * 59.99343 * 1 2 3 25 25 H 1.08992 * 109.47223 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46910 * 299.99966 * 1 2 3 27 27 H 1.09006 * 109.50645 * 56.85066 * 7 5 3 28 28 H 1.08997 * 109.50861 * 296.71922 * 7 5 3 29 29 H 1.09003 * 109.47456 * 309.67891 * 9 8 7 30 30 H 1.09000 * 109.47638 * 69.68242 * 9 8 7 31 31 H 1.09003 * 109.46557 * 299.99423 * 10 9 8 32 32 H 1.08992 * 109.47213 * 59.99766 * 10 9 8 33 33 H 1.08999 * 109.46321 * 299.99683 * 11 10 9 34 34 H 1.08998 * 109.46856 * 59.99428 * 11 10 9 35 35 H 1.08994 * 109.47236 * 299.99826 * 12 11 10 36 36 H 1.09005 * 109.46937 * 59.99961 * 12 11 10 37 37 H 0.97000 * 119.99761 * 180.02562 * 16 15 13 38 38 H 1.09004 * 109.50706 * 298.68119 * 21 8 7 39 39 H 1.08995 * 109.54210 * 178.57064 * 21 8 7 40 40 H 1.08997 * 109.50375 * 183.21864 * 22 21 8 41 41 H 1.08996 * 109.54637 * 63.10402 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9617 0.7037 0.8394 7 6 4.1080 0.6976 -1.3112 8 7 5.5703 0.8474 -1.3392 9 6 6.1369 0.2539 -2.5577 10 6 7.6620 0.2110 -2.4424 11 6 8.2522 -0.4065 -3.7118 12 6 9.7773 -0.4488 -3.5967 13 6 10.3586 -1.0576 -4.8467 14 1 9.7056 -1.3815 -5.6437 15 6 11.7242 -1.2001 -4.9734 16 7 12.5193 -0.8052 -4.0032 17 14 12.4447 -1.9541 -6.5231 18 1 11.3465 -2.3125 -7.4562 19 1 13.3485 -0.9736 -7.1766 20 1 13.2122 -3.1750 -6.1689 21 6 5.9515 2.2618 -1.2157 22 6 5.3914 2.8232 0.0939 23 8 3.9732 2.6407 0.1170 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.6709 1.2342 -2.1533 28 1 3.8490 -0.3590 -1.3781 29 1 5.7533 -0.7589 -2.6809 30 1 5.8546 0.8568 -3.4208 31 1 8.0456 1.2239 -2.3193 32 1 7.9443 -0.3919 -1.5794 33 1 7.8686 -1.4192 -3.8353 34 1 7.9698 0.1968 -4.5745 35 1 10.1606 0.5640 -3.4733 36 1 10.0600 -1.0519 -2.7339 37 1 13.4800 -0.9051 -4.0924 38 1 5.5439 2.8234 -2.0563 39 1 7.0381 2.3477 -1.2132 40 1 5.6228 3.8861 0.1627 41 1 5.8397 2.2978 0.9372 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385786065.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:59 Heat of formation + Delta-G solvation = -136.856632 kcal Electronic energy + Delta-G solvation = -20747.765705 eV Core-core repulsion = 17434.671425 eV Total energy + Delta-G solvation = -3313.094280 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.02527 -39.54964 -36.95753 -36.36402 -34.24250 -32.36871 -31.94757 -29.37788 -28.33494 -26.80245 -24.94666 -24.12687 -22.28181 -21.04321 -20.56410 -20.03575 -18.07142 -17.45202 -16.83881 -16.33203 -16.21710 -15.90322 -15.50739 -14.92203 -14.72381 -14.49169 -14.24134 -14.01861 -13.46910 -13.29717 -12.60558 -12.48962 -12.26023 -12.17467 -11.85417 -11.63980 -11.52715 -11.17118 -11.07966 -11.00090 -10.65482 -10.51726 -10.46269 -10.36912 -10.02294 -9.63861 -9.27600 -9.01189 -8.53510 -8.34072 -5.99118 -4.01241 1.80701 1.99886 3.31051 3.38496 3.42520 3.48768 3.79760 4.36469 4.43961 4.46784 4.66417 4.74802 4.77317 4.82910 4.93807 5.06700 5.16563 5.26360 5.33627 5.36771 5.42528 5.50266 5.62290 5.71256 5.82065 5.95040 6.08229 6.14917 6.45165 6.63962 6.74511 6.83641 6.89202 6.95155 7.18062 7.40522 7.69742 7.84895 8.01845 8.44671 9.06467 9.62821 11.12281 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.038693 B = 0.002768 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.467771 B =10111.742212 C =10630.305168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.354 6.354 3 C 0.469 3.531 4 O -0.486 6.486 5 C 0.106 3.894 6 H 0.108 0.892 7 C 0.030 3.970 8 N -0.534 5.534 9 C 0.056 3.944 10 C -0.114 4.114 11 C -0.109 4.109 12 C 0.021 3.979 13 C -0.519 4.519 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.009 3.991 22 C 0.066 3.934 23 O -0.364 6.364 24 H 0.064 0.936 25 H 0.105 0.895 26 H 0.064 0.936 27 H 0.047 0.953 28 H 0.100 0.900 29 H 0.076 0.924 30 H 0.035 0.965 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.047 0.953 34 H 0.045 0.955 35 H 0.014 0.986 36 H 0.016 0.984 37 H 0.259 0.741 38 H 0.045 0.955 39 H 0.100 0.900 40 H 0.107 0.893 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.155 3.412 9.594 23.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.271 6.271 3 C 0.310 3.690 4 O -0.371 6.371 5 C 0.047 3.953 6 H 0.126 0.874 7 C -0.098 4.098 8 N -0.259 5.259 9 C -0.070 4.070 10 C -0.151 4.151 11 C -0.148 4.148 12 C -0.016 4.016 13 C -0.558 4.558 14 H 0.073 0.927 15 C -0.146 4.146 16 N -0.536 5.536 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.119 4.119 22 C -0.010 4.010 23 O -0.283 6.283 24 H 0.083 0.917 25 H 0.123 0.877 26 H 0.083 0.917 27 H 0.065 0.935 28 H 0.118 0.882 29 H 0.095 0.905 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.033 0.967 36 H 0.034 0.966 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.118 0.882 40 H 0.125 0.875 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -21.155 3.630 10.055 23.703 hybrid contribution 0.188 -0.084 -1.576 1.590 sum -20.967 3.546 8.479 22.893 Atomic orbital electron populations 1.23322 0.75666 1.03999 1.02735 1.86484 1.23802 1.32601 1.84207 1.23154 0.91031 0.81743 0.73086 1.90691 1.66642 1.36292 1.43469 1.21379 0.87278 0.86133 1.00548 0.87441 1.22620 0.89537 1.02488 0.95173 1.62281 1.07810 1.15686 1.40127 1.22296 0.96980 0.99179 0.88586 1.21681 0.91737 1.01399 1.00322 1.21602 0.99573 0.98918 0.94660 1.19089 0.88458 0.97043 0.96992 1.21323 0.91651 1.40077 1.02730 0.92729 1.25036 0.97373 0.95749 0.96409 1.69977 1.03608 1.47763 1.32209 0.86556 0.79133 0.78959 0.83474 1.19776 1.21048 1.21009 1.22925 1.02771 0.88430 0.97765 1.22837 0.79177 1.01933 0.97088 1.88033 1.23445 1.22387 1.94435 0.91732 0.87675 0.91724 0.93501 0.88182 0.90512 0.94704 0.92512 0.91477 0.93371 0.93662 0.96743 0.96578 0.93093 0.93647 0.88154 0.87475 0.91504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.56 101.05 1.07 1.31 16 2 O -0.35 -3.38 10.56 -39.24 -0.41 -3.79 16 3 C 0.47 5.44 7.29 36.01 0.26 5.70 16 4 O -0.49 -7.08 16.26 -25.45 -0.41 -7.49 16 5 C 0.11 1.15 3.33 -27.83 -0.09 1.06 16 6 H 0.11 1.01 8.14 -51.93 -0.42 0.58 16 7 C 0.03 0.33 4.91 -3.71 -0.02 0.31 16 8 N -0.53 -6.46 4.73 -234.30 -1.11 -7.57 16 9 C 0.06 0.76 4.96 -3.82 -0.02 0.74 16 10 C -0.11 -1.84 5.14 -26.73 -0.14 -1.98 16 11 C -0.11 -2.19 5.15 -26.73 -0.14 -2.33 16 12 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 13 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 14 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -27.04 13.29 55.43 0.74 -26.31 16 17 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 C 0.01 0.10 5.43 -3.71 -0.02 0.08 16 22 C 0.07 0.66 7.01 37.21 0.26 0.92 16 23 O -0.36 -4.52 10.01 -55.10 -0.55 -5.07 16 24 H 0.06 0.43 8.13 -51.93 -0.42 0.00 16 25 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.10 0.96 8.09 -51.93 -0.42 0.54 16 29 H 0.08 0.98 8.04 -51.93 -0.42 0.56 16 30 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 31 H 0.06 0.91 6.51 -51.93 -0.34 0.58 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.10 1.13 6.37 -51.93 -0.33 0.80 16 40 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 338.03 15.07 5.09 5.09 Total: -1.00 -33.05 338.03 -8.03 -41.08 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: -6.96 Total: -5.25 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: 0.62 Total: -7.37 kcal Atomic # 7 Polarization: -33.51 SS G_CDS: -0.37 Total: -33.88 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -1.38 Total: -16.35 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.05 -8.03 -41.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385786065.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.778 kcal (2) G-P(sol) polarization free energy of solvation -33.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds