Wall clock time and date at job start Mon Mar 30 2020 05:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34223 * 117.00356 * 2 1 4 4 O 1.20824 * 120.00250 * 359.97438 * 3 2 1 5 5 C 1.50705 * 120.00321 * 180.02562 * 3 2 1 6 6 H 1.08993 * 109.54044 * 305.11299 * 5 3 2 7 7 C 1.53103 * 109.50416 * 65.21514 * 5 3 2 8 8 N 1.47017 * 109.25606 * 176.78487 * 7 5 3 9 9 C 1.46900 * 110.99765 * 177.61039 * 8 7 5 10 10 C 1.53001 * 109.46922 * 189.68430 * 9 8 7 11 11 C 1.53006 * 109.47115 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.46922 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.46890 * 179.97438 * 12 11 10 14 14 H 1.08007 * 119.99768 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00125 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99672 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00074 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47470 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47230 * 120.00079 * 17 15 13 20 20 H 1.48498 * 109.47138 * 240.00204 * 17 15 13 21 21 C 1.47014 * 110.75303 * 301.38548 * 8 7 5 22 22 C 1.53096 * 109.25675 * 58.61803 * 21 8 7 23 23 O 1.43010 * 109.51080 * 184.99811 * 5 3 2 24 24 H 1.09002 * 109.46855 * 59.99343 * 1 2 3 25 25 H 1.08992 * 109.47223 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46910 * 299.99966 * 1 2 3 27 27 H 1.09006 * 109.50645 * 56.85066 * 7 5 3 28 28 H 1.08997 * 109.50861 * 296.71922 * 7 5 3 29 29 H 1.09003 * 109.47456 * 309.67891 * 9 8 7 30 30 H 1.09000 * 109.47638 * 69.68242 * 9 8 7 31 31 H 1.09003 * 109.46557 * 299.99423 * 10 9 8 32 32 H 1.08992 * 109.47213 * 59.99766 * 10 9 8 33 33 H 1.08999 * 109.46321 * 299.99683 * 11 10 9 34 34 H 1.08998 * 109.46856 * 59.99428 * 11 10 9 35 35 H 1.08994 * 109.47236 * 299.99826 * 12 11 10 36 36 H 1.09005 * 109.46937 * 59.99961 * 12 11 10 37 37 H 0.97000 * 119.99761 * 180.02562 * 16 15 13 38 38 H 1.09004 * 109.50706 * 298.68119 * 21 8 7 39 39 H 1.08995 * 109.54210 * 178.57064 * 21 8 7 40 40 H 1.08997 * 109.50375 * 183.21864 * 22 21 8 41 41 H 1.08996 * 109.54637 * 63.10402 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9617 0.7037 0.8394 7 6 4.1080 0.6976 -1.3112 8 7 5.5703 0.8474 -1.3392 9 6 6.1369 0.2539 -2.5577 10 6 7.6620 0.2110 -2.4424 11 6 8.2522 -0.4065 -3.7118 12 6 9.7773 -0.4488 -3.5967 13 6 10.3586 -1.0576 -4.8467 14 1 9.7056 -1.3815 -5.6437 15 6 11.7242 -1.2001 -4.9734 16 7 12.5193 -0.8052 -4.0032 17 14 12.4447 -1.9541 -6.5231 18 1 11.3465 -2.3125 -7.4562 19 1 13.3485 -0.9736 -7.1766 20 1 13.2122 -3.1750 -6.1689 21 6 5.9515 2.2618 -1.2157 22 6 5.3914 2.8232 0.0939 23 8 3.9732 2.6407 0.1170 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.6709 1.2342 -2.1533 28 1 3.8490 -0.3590 -1.3781 29 1 5.7533 -0.7589 -2.6809 30 1 5.8546 0.8568 -3.4208 31 1 8.0456 1.2239 -2.3193 32 1 7.9443 -0.3919 -1.5794 33 1 7.8686 -1.4192 -3.8353 34 1 7.9698 0.1968 -4.5745 35 1 10.1606 0.5640 -3.4733 36 1 10.0600 -1.0519 -2.7339 37 1 13.4800 -0.9051 -4.0924 38 1 5.5439 2.8234 -2.0563 39 1 7.0381 2.3477 -1.2132 40 1 5.6228 3.8861 0.1627 41 1 5.8397 2.2978 0.9372 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385786065.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:59 Heat of formation + Delta-G solvation = -158.339799 kcal Electronic energy + Delta-G solvation = -20748.697285 eV Core-core repulsion = 17434.671425 eV Total energy + Delta-G solvation = -3314.025860 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.88234 -40.42566 -37.91146 -37.38040 -35.93194 -34.12198 -32.91117 -30.80234 -29.21693 -27.93289 -26.22006 -25.33874 -23.54422 -22.20053 -21.61797 -21.45835 -18.92544 -18.41237 -18.30120 -17.64407 -17.19292 -16.78147 -16.56390 -16.49316 -15.88088 -15.60260 -15.40775 -15.01763 -14.49600 -14.30219 -14.14494 -13.76453 -13.58414 -13.20649 -13.08025 -12.92819 -12.82674 -12.59628 -12.31620 -12.21698 -12.00794 -11.88977 -11.83940 -11.49690 -11.32013 -11.22824 -11.08364 -10.76908 -10.54357 -9.49641 -8.18948 -6.29798 0.92846 1.25321 1.40555 1.40677 1.54030 2.41462 2.57418 2.98952 3.14145 3.53229 3.64947 3.85639 3.91416 3.98589 4.16508 4.23578 4.27967 4.31492 4.41809 4.49331 4.55099 4.58687 4.64558 4.70300 4.74915 4.84583 4.89521 4.98215 5.18238 5.23797 5.29319 5.38146 5.57328 5.78375 5.81731 5.87687 5.90668 5.93844 6.27891 6.57285 6.88346 7.39546 8.93059 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.038693 B = 0.002768 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.467771 B =10111.742212 C =10630.305168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.352 6.352 3 C 0.474 3.526 4 O -0.522 6.522 5 C 0.105 3.895 6 H 0.125 0.875 7 C 0.035 3.965 8 N -0.538 5.538 9 C 0.066 3.934 10 C -0.102 4.102 11 C -0.097 4.097 12 C 0.023 3.977 13 C -0.542 4.542 14 H 0.059 0.941 15 C -0.003 4.003 16 N -0.934 5.934 17 Si 0.964 3.036 18 H -0.262 1.262 19 H -0.279 1.279 20 H -0.278 1.278 21 C 0.008 3.992 22 C 0.068 3.932 23 O -0.385 6.385 24 H 0.062 0.938 25 H 0.138 0.862 26 H 0.065 0.935 27 H 0.039 0.961 28 H 0.116 0.884 29 H 0.087 0.913 30 H 0.036 0.964 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.048 0.952 35 H -0.011 1.011 36 H -0.009 1.009 37 H 0.263 0.737 38 H 0.039 0.961 39 H 0.098 0.902 40 H 0.124 0.876 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.112 2.525 9.121 24.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.268 6.268 3 C 0.316 3.684 4 O -0.410 6.410 5 C 0.046 3.954 6 H 0.143 0.857 7 C -0.093 4.093 8 N -0.263 5.263 9 C -0.061 4.061 10 C -0.140 4.140 11 C -0.135 4.135 12 C -0.014 4.014 13 C -0.581 4.581 14 H 0.077 0.923 15 C -0.200 4.200 16 N -0.575 5.575 17 Si 0.789 3.211 18 H -0.186 1.186 19 H -0.204 1.204 20 H -0.203 1.203 21 C -0.120 4.120 22 C -0.008 4.008 23 O -0.305 6.305 24 H 0.081 0.919 25 H 0.156 0.844 26 H 0.083 0.917 27 H 0.058 0.942 28 H 0.134 0.866 29 H 0.106 0.894 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.008 0.992 36 H 0.009 0.991 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.116 0.884 40 H 0.142 0.858 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -22.130 2.727 9.586 24.270 hybrid contribution 0.463 0.177 -1.389 1.475 sum -21.667 2.904 8.197 23.347 Atomic orbital electron populations 1.23644 0.73977 1.06149 1.02725 1.86482 1.25453 1.31374 1.83533 1.23312 0.91278 0.81744 0.72018 1.90675 1.67421 1.37534 1.45410 1.21490 0.86966 0.85814 1.01123 0.85718 1.22618 0.88424 1.03345 0.94925 1.62226 1.08685 1.16123 1.39217 1.22094 0.94676 1.00071 0.89273 1.21486 0.93891 1.00718 0.97943 1.21401 0.95599 0.99757 0.96779 1.19018 0.92421 0.94736 0.95227 1.21783 0.92319 1.40250 1.03699 0.92259 1.25997 0.97930 0.96159 0.99951 1.70106 1.04057 1.48877 1.34439 0.85410 0.78426 0.78087 0.79195 1.18576 1.20440 1.20337 1.22962 1.02664 0.88026 0.98381 1.22955 0.78172 1.03124 0.96578 1.88015 1.24607 1.23351 1.94505 0.91911 0.84444 0.91667 0.94227 0.86622 0.89432 0.94593 0.92684 0.92067 0.92823 0.93357 0.99226 0.99060 0.92809 0.94254 0.88380 0.85798 0.90517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 113.37 1.20 1.52 16 2 O -0.35 -6.12 10.56 -51.35 -0.54 -6.66 16 3 C 0.47 10.49 7.29 71.24 0.52 11.01 16 4 O -0.52 -15.06 16.26 28.38 0.46 -14.60 16 5 C 0.11 2.13 3.33 29.88 0.10 2.23 16 6 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 7 C 0.04 0.70 4.91 86.32 0.42 1.12 16 8 N -0.54 -12.13 4.73 -895.19 -4.23 -16.36 16 9 C 0.07 1.65 4.96 86.30 0.43 2.08 16 10 C -0.10 -3.25 5.14 30.60 0.16 -3.09 16 11 C -0.10 -3.85 5.15 30.60 0.16 -3.70 16 12 C 0.02 1.21 4.97 29.85 0.15 1.36 16 13 C -0.54 -31.00 9.11 25.60 0.23 -30.76 16 14 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 15 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 16 N -0.93 -57.15 13.29 21.45 0.28 -56.86 16 17 Si 0.96 44.31 29.54 68.60 2.03 46.33 16 18 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 20 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 21 C 0.01 0.16 5.43 86.31 0.47 0.63 16 22 C 0.07 1.26 7.01 72.01 0.50 1.76 16 23 O -0.39 -9.14 10.01 -129.98 -1.30 -10.44 16 24 H 0.06 0.76 8.13 -2.39 -0.02 0.74 16 25 H 0.14 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.06 0.76 8.13 -2.39 -0.02 0.74 16 27 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 28 H 0.12 1.92 8.09 -2.39 -0.02 1.90 16 29 H 0.09 2.02 8.04 -2.39 -0.02 2.00 16 30 H 0.04 0.90 8.12 -2.39 -0.02 0.88 16 31 H 0.05 1.75 6.51 -2.39 -0.02 1.74 16 32 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 35 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 36 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 37 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 38 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.10 2.13 6.37 -2.39 -0.02 2.11 16 40 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -71.00 338.03 2.48 -68.52 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: 0.99 Total: 5.61 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: 4.80 Total: -15.53 kcal Atomic # 7 Polarization: -69.27 SS G_CDS: -3.95 Total: -73.22 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -1.38 Total: -31.70 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -71.00 2.48 -68.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385786065.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.819 kcal (2) G-P(sol) polarization free energy of solvation -71.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds