Wall clock time and date at job start Mon Mar 30 2020 04:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46893 * 110.99987 * 2 1 4 4 C 1.53004 * 109.46861 * 293.94885 * 3 2 1 5 5 C 1.53005 * 109.47013 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.46720 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46848 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00162 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00008 * 179.97438 * 7 6 5 10 10 N 1.31508 * 119.99754 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99992 * 0.02562 * 9 7 6 12 12 H 1.48505 * 109.46973 * 89.99494 * 11 9 7 13 13 H 1.48495 * 109.47116 * 209.99533 * 11 9 7 14 14 H 1.48498 * 109.47153 * 329.99839 * 11 9 7 15 15 C 1.46904 * 110.99704 * 123.94839 * 2 1 3 16 16 H 1.09006 * 110.56545 * 286.58490 * 15 2 1 17 17 C 1.54487 * 110.51272 * 49.26138 * 15 2 1 18 18 O 1.44423 * 104.80221 * 142.61990 * 17 15 2 19 19 C 1.44426 * 105.27866 * 319.49420 * 18 17 15 20 20 C 1.54483 * 104.80192 * 40.50845 * 19 18 17 21 21 H 1.08996 * 110.50821 * 94.80513 * 20 19 18 22 22 C 1.50699 * 110.50810 * 217.37737 * 20 19 18 23 23 O 1.20822 * 120.00111 * 53.77676 * 22 20 19 24 24 O 1.34225 * 119.99814 * 233.77449 * 22 20 19 25 25 H 1.08997 * 109.47849 * 297.36045 * 1 2 3 26 26 H 1.09006 * 109.47284 * 57.36520 * 1 2 3 27 27 H 1.09005 * 109.47310 * 177.35736 * 1 2 3 28 28 H 1.09000 * 109.47665 * 53.94689 * 3 2 1 29 29 H 1.09001 * 109.46973 * 173.95164 * 3 2 1 30 30 H 1.09000 * 109.46821 * 300.00321 * 4 3 2 31 31 H 1.09001 * 109.47099 * 60.00356 * 4 3 2 32 32 H 1.08996 * 109.46903 * 299.99906 * 5 4 3 33 33 H 1.09001 * 109.47139 * 60.00084 * 5 4 3 34 34 H 1.08996 * 109.47440 * 299.99680 * 6 5 4 35 35 H 1.09001 * 109.47162 * 60.00200 * 6 5 4 36 36 H 0.97008 * 120.00027 * 180.02562 * 10 9 7 37 37 H 1.08999 * 110.36885 * 23.79718 * 17 15 2 38 38 H 1.08991 * 110.46528 * 261.50675 * 17 15 2 39 39 H 1.08997 * 110.36881 * 281.67664 * 19 18 17 40 40 H 1.08998 * 110.46692 * 159.38708 * 19 18 17 41 41 H 0.96711 * 117.00183 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0573 -1.3184 5 6 2.1803 3.4855 -1.3187 6 6 1.8169 4.1711 -2.6373 7 6 2.3570 5.5781 -2.6373 8 1 2.9049 5.9462 -1.7826 9 6 2.1524 6.3950 -3.7291 10 7 2.6241 7.6226 -3.7293 11 14 1.2052 5.7580 -5.2078 12 1 -0.2406 6.0483 -5.0321 13 1 1.6987 6.4279 -6.4378 14 1 1.4044 4.2915 -5.3290 15 6 1.9954 -0.7659 1.1377 16 1 1.8606 -0.2124 2.0671 17 6 1.3078 -2.1465 1.2254 18 8 2.3524 -3.0533 1.6404 19 6 3.5249 -2.6470 0.9014 20 6 3.4874 -1.1027 0.9197 21 1 4.0922 -0.7158 1.7398 22 6 3.9673 -0.5473 -0.3964 23 8 3.4586 -0.9150 -1.4288 24 8 4.9598 0.3560 -0.4218 25 1 -0.3635 0.4723 0.9126 26 1 -0.3634 0.5542 -0.8655 27 1 -0.3634 -1.0266 -0.0474 28 1 1.5610 1.9274 0.8308 29 1 3.0797 1.3443 0.1083 30 1 2.0658 1.5013 -2.1492 31 1 0.5472 2.0844 -1.4267 32 1 1.7463 4.0417 -0.4878 33 1 3.2646 3.4581 -1.2106 34 1 2.2513 3.6149 -3.4679 35 1 0.7327 4.1985 -2.7458 36 1 2.4799 8.1975 -4.4972 37 1 0.9172 -2.4384 0.2506 38 1 0.5066 -2.1270 1.9641 39 1 3.4742 -3.0157 -0.1231 40 1 4.4286 -3.0104 1.3904 41 1 5.2332 0.6837 -1.2896 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385797615.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:00 Heat of formation + Delta-G solvation = -132.576407 kcal Electronic energy + Delta-G solvation = -21878.799334 eV Core-core repulsion = 18565.890659 eV Total energy + Delta-G solvation = -3312.908676 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.14422 -39.07620 -37.32584 -35.96963 -34.54225 -32.45508 -31.79792 -29.82878 -28.25609 -26.60908 -24.54102 -24.03801 -22.05125 -20.97441 -20.23249 -19.88801 -18.25523 -17.24400 -16.89726 -16.59170 -16.23493 -15.65374 -15.18095 -15.01194 -14.57462 -14.29068 -14.09824 -13.81322 -13.15266 -12.82770 -12.71031 -12.46076 -12.35159 -11.97586 -11.87802 -11.65649 -11.63416 -11.34454 -11.23437 -11.03564 -10.74863 -10.48771 -10.42026 -10.17974 -9.86256 -9.68292 -9.50348 -9.15169 -8.52471 -8.47220 -6.03158 -4.00834 2.23679 2.86984 3.31862 3.39302 3.44405 3.47494 3.75794 4.04604 4.35056 4.46910 4.68421 4.74103 4.84667 4.99472 5.16167 5.21727 5.30494 5.31368 5.32551 5.39364 5.39877 5.46578 5.58092 5.73094 5.81996 5.98655 6.02717 6.25833 6.35652 6.57786 6.62085 6.75051 6.83976 6.86422 7.01513 7.33548 7.46774 7.81783 7.97561 8.55786 9.01917 9.59967 11.10401 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.031260 B = 0.004003 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.494912 B = 6992.844855 C = 7321.321252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.528 5.528 3 C 0.042 3.958 4 C -0.115 4.115 5 C -0.100 4.100 6 C -0.013 4.013 7 C -0.520 4.520 8 H 0.070 0.930 9 C 0.065 3.935 10 N -0.905 5.905 11 Si 0.880 3.120 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.265 1.265 15 C 0.062 3.938 16 H 0.069 0.931 17 C 0.051 3.949 18 O -0.367 6.367 19 C 0.063 3.937 20 C -0.114 4.114 21 H 0.112 0.888 22 C 0.492 3.508 23 O -0.478 6.478 24 O -0.524 6.524 25 H 0.027 0.973 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.037 0.963 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.015 0.985 35 H 0.009 0.991 36 H 0.262 0.738 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.102 0.898 41 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.110 -20.892 11.262 23.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.253 5.253 3 C -0.085 4.085 4 C -0.153 4.153 5 C -0.138 4.138 6 C -0.050 4.050 7 C -0.558 4.558 8 H 0.089 0.911 9 C -0.136 4.136 10 N -0.545 5.545 11 Si 0.707 3.293 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.190 1.190 15 C -0.048 4.048 16 H 0.087 0.913 17 C -0.026 4.026 18 O -0.285 6.285 19 C -0.014 4.014 20 C -0.134 4.134 21 H 0.130 0.870 22 C 0.331 3.669 23 O -0.363 6.363 24 O -0.337 6.337 25 H 0.046 0.954 26 H 0.098 0.902 27 H 0.088 0.912 28 H 0.055 0.945 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.033 0.967 35 H 0.028 0.972 36 H 0.072 0.928 37 H 0.097 0.903 38 H 0.115 0.885 39 H 0.094 0.906 40 H 0.120 0.880 41 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -0.237 -21.406 10.967 24.052 hybrid contribution -0.555 0.828 -0.769 1.259 sum -0.792 -20.577 10.197 22.979 Atomic orbital electron populations 1.22479 0.86724 1.02186 1.01457 1.62246 1.08587 1.14566 1.39861 1.22492 1.00250 0.86728 0.98994 1.21693 1.00974 0.96812 0.95792 1.21419 0.99865 0.92564 0.99978 1.19556 0.96037 0.96304 0.93131 1.21178 1.35321 0.95702 1.03600 0.91137 1.25040 0.95391 0.94700 0.98420 1.69920 1.46471 1.07171 1.30890 0.86775 0.80378 0.79674 0.82460 1.20346 1.21403 1.18963 1.22985 0.91610 0.96319 0.93883 0.91318 1.23621 0.90966 0.86518 1.01454 1.89149 1.19876 1.54424 1.65021 1.23366 0.90052 0.89656 0.98328 1.22440 0.97700 0.98250 0.95015 0.87016 1.22358 0.76560 0.76716 0.91217 1.90727 1.53537 1.57257 1.34759 1.84507 1.51656 1.56339 1.41238 0.95437 0.90219 0.91250 0.94474 0.90486 0.91472 0.92409 0.93099 0.92924 0.96667 0.97246 0.92787 0.90283 0.88548 0.90584 0.87991 0.72654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 8.94 60.06 0.54 0.74 16 2 N -0.53 -6.42 3.03 -232.99 -0.71 -7.13 16 3 C 0.04 0.58 4.20 -3.83 -0.02 0.56 16 4 C -0.11 -1.89 5.14 -26.73 -0.14 -2.03 16 5 C -0.10 -1.98 5.15 -26.73 -0.14 -2.12 16 6 C -0.01 -0.31 4.04 -27.88 -0.11 -0.43 16 7 C -0.52 -15.06 9.66 -34.44 -0.33 -15.39 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.77 16 9 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 10 N -0.91 -28.26 13.96 55.43 0.77 -27.49 16 11 Si 0.88 22.14 27.47 -169.99 -4.67 17.47 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 14 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 15 C 0.06 0.62 2.84 -66.14 -0.19 0.43 16 16 H 0.07 0.64 8.11 -51.93 -0.42 0.22 16 17 C 0.05 0.47 5.99 37.94 0.23 0.70 16 18 O -0.37 -3.75 11.65 -35.23 -0.41 -4.16 16 19 C 0.06 0.57 7.15 37.94 0.27 0.84 16 20 C -0.11 -1.11 3.41 -90.21 -0.31 -1.42 16 21 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 22 C 0.49 5.91 4.40 36.01 0.16 6.07 16 23 O -0.48 -7.21 16.10 -18.75 -0.30 -7.51 16 24 O -0.52 -5.66 12.39 -39.24 -0.49 -6.15 16 25 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.08 0.93 6.35 -51.93 -0.33 0.60 16 27 H 0.07 0.62 6.27 -51.93 -0.33 0.30 16 28 H 0.04 0.50 8.12 -51.93 -0.42 0.08 16 29 H 0.08 1.06 4.84 -51.93 -0.25 0.81 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.06 0.93 6.50 -51.93 -0.34 0.60 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 35 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 36 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 37 H 0.08 0.78 7.03 -51.93 -0.37 0.41 16 38 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.76 7.44 -51.93 -0.39 0.37 16 40 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.41 3.44 9.10 45.56 0.41 3.85 16 LS Contribution 323.58 15.07 4.88 4.88 Total: -1.00 -33.83 323.58 -6.79 -40.62 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -5.74 Total: -0.32 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -0.14 Total: -10.21 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: 0.07 Total: -34.62 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -1.20 Total: -17.82 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.83 -6.79 -40.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385797615.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.956 kcal (2) G-P(sol) polarization free energy of solvation -33.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds