Wall clock time and date at job start Mon Mar 30 2020 04:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46893 * 110.99987 * 2 1 4 4 C 1.53004 * 109.46861 * 293.94885 * 3 2 1 5 5 C 1.53005 * 109.47013 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.46720 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46848 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00162 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00008 * 179.97438 * 7 6 5 10 10 N 1.31508 * 119.99754 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99992 * 0.02562 * 9 7 6 12 12 H 1.48505 * 109.46973 * 89.99494 * 11 9 7 13 13 H 1.48495 * 109.47116 * 209.99533 * 11 9 7 14 14 H 1.48498 * 109.47153 * 329.99839 * 11 9 7 15 15 C 1.46904 * 110.99704 * 123.94839 * 2 1 3 16 16 H 1.09006 * 110.56545 * 286.58490 * 15 2 1 17 17 C 1.54487 * 110.51272 * 49.26138 * 15 2 1 18 18 O 1.44423 * 104.80221 * 142.61990 * 17 15 2 19 19 C 1.44426 * 105.27866 * 319.49420 * 18 17 15 20 20 C 1.54483 * 104.80192 * 40.50845 * 19 18 17 21 21 H 1.08996 * 110.50821 * 94.80513 * 20 19 18 22 22 C 1.50699 * 110.50810 * 217.37737 * 20 19 18 23 23 O 1.20822 * 120.00111 * 53.77676 * 22 20 19 24 24 O 1.34225 * 119.99814 * 233.77449 * 22 20 19 25 25 H 1.08997 * 109.47849 * 297.36045 * 1 2 3 26 26 H 1.09006 * 109.47284 * 57.36520 * 1 2 3 27 27 H 1.09005 * 109.47310 * 177.35736 * 1 2 3 28 28 H 1.09000 * 109.47665 * 53.94689 * 3 2 1 29 29 H 1.09001 * 109.46973 * 173.95164 * 3 2 1 30 30 H 1.09000 * 109.46821 * 300.00321 * 4 3 2 31 31 H 1.09001 * 109.47099 * 60.00356 * 4 3 2 32 32 H 1.08996 * 109.46903 * 299.99906 * 5 4 3 33 33 H 1.09001 * 109.47139 * 60.00084 * 5 4 3 34 34 H 1.08996 * 109.47440 * 299.99680 * 6 5 4 35 35 H 1.09001 * 109.47162 * 60.00200 * 6 5 4 36 36 H 0.97008 * 120.00027 * 180.02562 * 10 9 7 37 37 H 1.08999 * 110.36885 * 23.79718 * 17 15 2 38 38 H 1.08991 * 110.46528 * 261.50675 * 17 15 2 39 39 H 1.08997 * 110.36881 * 281.67664 * 19 18 17 40 40 H 1.08998 * 110.46692 * 159.38708 * 19 18 17 41 41 H 0.96711 * 117.00183 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0573 -1.3184 5 6 2.1803 3.4855 -1.3187 6 6 1.8169 4.1711 -2.6373 7 6 2.3570 5.5781 -2.6373 8 1 2.9049 5.9462 -1.7826 9 6 2.1524 6.3950 -3.7291 10 7 2.6241 7.6226 -3.7293 11 14 1.2052 5.7580 -5.2078 12 1 -0.2406 6.0483 -5.0321 13 1 1.6987 6.4279 -6.4378 14 1 1.4044 4.2915 -5.3290 15 6 1.9954 -0.7659 1.1377 16 1 1.8606 -0.2124 2.0671 17 6 1.3078 -2.1465 1.2254 18 8 2.3524 -3.0533 1.6404 19 6 3.5249 -2.6470 0.9014 20 6 3.4874 -1.1027 0.9197 21 1 4.0922 -0.7158 1.7398 22 6 3.9673 -0.5473 -0.3964 23 8 3.4586 -0.9150 -1.4288 24 8 4.9598 0.3560 -0.4218 25 1 -0.3635 0.4723 0.9126 26 1 -0.3634 0.5542 -0.8655 27 1 -0.3634 -1.0266 -0.0474 28 1 1.5610 1.9274 0.8308 29 1 3.0797 1.3443 0.1083 30 1 2.0658 1.5013 -2.1492 31 1 0.5472 2.0844 -1.4267 32 1 1.7463 4.0417 -0.4878 33 1 3.2646 3.4581 -1.2106 34 1 2.2513 3.6149 -3.4679 35 1 0.7327 4.1985 -2.7458 36 1 2.4799 8.1975 -4.4972 37 1 0.9172 -2.4384 0.2506 38 1 0.5066 -2.1270 1.9641 39 1 3.4742 -3.0157 -0.1231 40 1 4.4286 -3.0104 1.3904 41 1 5.2332 0.6837 -1.2896 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385797615.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:59 Heat of formation + Delta-G solvation = -156.802138 kcal Electronic energy + Delta-G solvation = -21879.849841 eV Core-core repulsion = 18565.890659 eV Total energy + Delta-G solvation = -3313.959182 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.99335 -39.91713 -38.32091 -36.90935 -36.18710 -34.33625 -32.75935 -31.22034 -29.27536 -27.80292 -25.64453 -25.24735 -23.04162 -22.31110 -21.70817 -20.87215 -19.13994 -18.87767 -18.11375 -17.62288 -17.12303 -16.56840 -16.29518 -16.10849 -16.02339 -15.63920 -15.11987 -14.84478 -14.70104 -14.09531 -14.01351 -13.75962 -13.50131 -13.16293 -13.07022 -12.78522 -12.65669 -12.54133 -12.32758 -12.24355 -12.09920 -11.93233 -11.72542 -11.38778 -11.38050 -11.31997 -11.21338 -10.89078 -10.77952 -9.35130 -8.31231 -6.35058 1.33036 1.33637 1.35795 1.48181 2.06986 2.34554 2.67380 2.98602 3.04154 3.30767 3.64592 3.88693 3.97701 4.01463 4.08613 4.16356 4.35276 4.42995 4.48828 4.49130 4.58679 4.67452 4.67871 4.71944 4.75634 4.77943 4.84685 5.03298 5.10383 5.12124 5.22426 5.51720 5.54956 5.60486 5.65988 5.74289 5.94231 6.02753 6.27476 6.72897 7.11011 7.29888 8.85624 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.031260 B = 0.004003 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.494912 B = 6992.844855 C = 7321.321252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.541 5.541 3 C 0.051 3.949 4 C -0.101 4.101 5 C -0.091 4.091 6 C -0.011 4.011 7 C -0.533 4.533 8 H 0.032 0.968 9 C 0.004 3.996 10 N -0.951 5.951 11 Si 0.950 3.050 12 H -0.265 1.265 13 H -0.282 1.282 14 H -0.251 1.251 15 C 0.059 3.941 16 H 0.083 0.917 17 C 0.054 3.946 18 O -0.376 6.376 19 C 0.065 3.935 20 C -0.115 4.115 21 H 0.132 0.868 22 C 0.493 3.507 23 O -0.515 6.515 24 O -0.524 6.524 25 H 0.039 0.961 26 H 0.066 0.934 27 H 0.085 0.915 28 H 0.043 0.957 29 H 0.076 0.924 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.015 0.985 35 H 0.015 0.985 36 H 0.266 0.734 37 H 0.070 0.930 38 H 0.118 0.882 39 H 0.061 0.939 40 H 0.127 0.873 41 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.023 -22.728 11.807 25.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.266 5.266 3 C -0.077 4.077 4 C -0.139 4.139 5 C -0.130 4.130 6 C -0.048 4.048 7 C -0.571 4.571 8 H 0.051 0.949 9 C -0.192 4.192 10 N -0.592 5.592 11 Si 0.773 3.227 12 H -0.190 1.190 13 H -0.208 1.208 14 H -0.174 1.174 15 C -0.050 4.050 16 H 0.101 0.899 17 C -0.023 4.023 18 O -0.294 6.294 19 C -0.012 4.012 20 C -0.135 4.135 21 H 0.150 0.850 22 C 0.335 3.665 23 O -0.402 6.402 24 O -0.338 6.338 25 H 0.057 0.943 26 H 0.084 0.916 27 H 0.104 0.896 28 H 0.061 0.939 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.033 0.967 35 H 0.033 0.967 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.136 0.864 39 H 0.080 0.920 40 H 0.145 0.855 41 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -1.141 -23.252 11.533 25.980 hybrid contribution -0.200 1.447 -0.885 1.708 sum -1.341 -21.805 10.648 24.303 Atomic orbital electron populations 1.22520 0.85836 1.03201 1.01405 1.62169 1.09539 1.13472 1.41409 1.22278 1.00322 0.87770 0.97280 1.21477 1.00868 0.94448 0.97129 1.21270 0.99829 0.94394 0.97478 1.19518 0.95948 0.93835 0.95525 1.21532 1.34953 0.98138 1.02488 0.94924 1.26014 0.96504 0.94794 1.01920 1.70067 1.48181 1.08747 1.32210 0.85659 0.79147 0.79717 0.78143 1.19037 1.20787 1.17440 1.23100 0.91677 0.96616 0.93567 0.89916 1.23664 0.91184 0.85662 1.01750 1.89145 1.20373 1.54814 1.65104 1.23421 0.90741 0.89114 0.97893 1.22590 0.97903 0.98711 0.94303 0.85020 1.22814 0.75979 0.76102 0.91607 1.90713 1.54766 1.58482 1.36190 1.84499 1.51291 1.56004 1.42037 0.94259 0.91560 0.89642 0.93914 0.90632 0.92791 0.91933 0.93312 0.93270 0.96702 0.96653 0.92470 0.91205 0.86372 0.92024 0.85518 0.71670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 8.94 127.69 1.14 1.48 16 2 N -0.54 -12.14 3.03 -891.05 -2.70 -14.84 16 3 C 0.05 1.31 4.20 86.31 0.36 1.67 16 4 C -0.10 -3.22 5.14 30.60 0.16 -3.06 16 5 C -0.09 -3.58 5.15 30.60 0.16 -3.42 16 6 C -0.01 -0.52 4.04 29.85 0.12 -0.40 16 7 C -0.53 -31.42 9.66 25.60 0.25 -31.18 16 8 H 0.03 2.10 7.99 -2.91 -0.02 2.08 16 9 C 0.00 0.26 5.47 84.66 0.46 0.72 16 10 N -0.95 -60.50 13.96 21.45 0.30 -60.20 16 11 Si 0.95 45.29 27.47 68.60 1.88 47.18 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 13 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 14 H -0.25 -11.28 6.54 99.48 0.65 -10.63 16 15 C 0.06 1.05 2.84 45.93 0.13 1.18 16 16 H 0.08 1.26 8.11 -2.38 -0.02 1.24 16 17 C 0.05 0.86 5.99 72.49 0.43 1.29 16 18 O -0.38 -6.80 11.65 -148.98 -1.74 -8.53 16 19 C 0.07 1.04 7.15 72.49 0.52 1.56 16 20 C -0.12 -2.00 3.41 -10.53 -0.04 -2.04 16 21 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 22 C 0.49 11.28 4.40 71.24 0.31 11.59 16 23 O -0.51 -15.24 16.10 21.98 0.35 -14.89 16 24 O -0.52 -10.75 12.39 -51.37 -0.64 -11.39 16 25 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.07 1.44 6.35 -2.38 -0.02 1.42 16 27 H 0.09 1.33 6.27 -2.38 -0.01 1.32 16 28 H 0.04 1.05 8.12 -2.39 -0.02 1.03 16 29 H 0.08 1.96 4.84 -2.39 -0.01 1.95 16 30 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.06 1.93 6.50 -2.39 -0.02 1.91 16 32 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.01 0.71 7.20 -2.39 -0.02 0.69 16 35 H 0.02 0.71 7.57 -2.39 -0.02 0.69 16 36 H 0.27 15.76 8.31 -92.70 -0.77 14.99 16 37 H 0.07 1.24 7.03 -2.39 -0.02 1.22 16 38 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.06 1.17 7.44 -2.39 -0.02 1.15 16 40 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.42 6.80 9.10 -74.05 -0.67 6.12 16 Total: -1.00 -72.98 323.58 1.77 -71.20 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 0.29 Total: 12.07 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: 4.01 Total: -20.60 kcal Atomic # 7 Polarization: -72.64 SS G_CDS: -2.40 Total: -75.04 kcal Atomic # 8 Polarization: -32.79 SS G_CDS: -2.02 Total: -34.81 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.88 Total: 47.18 kcal Total: -72.98 1.77 -71.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385797615.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.600 kcal (2) G-P(sol) polarization free energy of solvation -72.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds