Wall clock time and date at job start Mon Mar 30 2020 05:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34233 * 117.00100 * 2 1 4 4 O 1.20825 * 119.99870 * 0.02562 * 3 2 1 5 5 C 1.50692 * 119.99965 * 180.02562 * 3 2 1 6 6 H 1.09002 * 110.42463 * 302.31136 * 5 3 2 7 7 C 1.54909 * 110.37560 * 64.63097 * 5 3 2 8 8 C 1.55135 * 101.65392 * 155.89748 * 7 5 3 9 9 H 1.09004 * 110.70681 * 82.72684 * 8 7 5 10 10 O 1.42904 * 110.70619 * 205.96466 * 8 7 5 11 11 C 1.54322 * 103.02006 * 324.34772 * 8 7 5 12 12 N 1.47439 * 107.23490 * 22.28319 * 11 8 7 13 13 C 1.46901 * 110.99961 * 123.25626 * 12 11 8 14 14 C 1.53000 * 109.46769 * 69.87863 * 13 12 11 15 15 C 1.53001 * 109.46886 * 180.02562 * 14 13 12 16 16 C 1.53000 * 109.46886 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.46912 * 179.97438 * 16 15 14 18 18 H 1.08009 * 120.00339 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00310 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99776 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00473 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47163 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47233 * 120.00015 * 21 19 17 24 24 H 1.48504 * 109.47158 * 239.99855 * 21 19 17 25 25 H 1.08999 * 109.47293 * 59.99674 * 1 2 3 26 26 H 1.09001 * 109.47250 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47233 * 299.99595 * 1 2 3 28 28 H 1.08997 * 110.98656 * 37.80800 * 7 5 3 29 29 H 1.08995 * 110.98825 * 273.98759 * 7 5 3 30 30 H 0.96705 * 113.99986 * 175.05622 * 10 8 7 31 31 H 1.09003 * 109.88473 * 262.87599 * 11 8 7 32 32 H 1.08997 * 109.88802 * 141.69469 * 11 8 7 33 33 H 1.09002 * 109.47401 * 309.87571 * 13 12 11 34 34 H 1.09001 * 109.46874 * 189.87583 * 13 12 11 35 35 H 1.09001 * 109.47194 * 299.99524 * 14 13 12 36 36 H 1.08992 * 109.47399 * 59.99697 * 14 13 12 37 37 H 1.09001 * 109.47109 * 299.99380 * 15 14 13 38 38 H 1.09002 * 109.47508 * 59.99571 * 15 14 13 39 39 H 1.08992 * 109.47098 * 299.99158 * 16 15 14 40 40 H 1.09001 * 109.47583 * 60.00267 * 16 15 14 41 41 H 0.96998 * 120.00187 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2748 -0.0006 6 1 3.9750 0.7493 0.8625 7 6 4.1369 0.6820 -1.3131 8 6 5.5106 1.3965 -1.4084 9 1 6.2542 0.8854 -0.7969 10 8 5.9433 1.4802 -2.7678 11 6 5.2118 2.8012 -0.8434 12 7 4.0077 2.6859 -0.0004 13 6 4.2752 3.1536 1.3663 14 6 4.4672 4.6715 1.3573 15 6 4.7464 5.1586 2.7806 16 6 4.9377 6.6766 2.7718 17 6 5.2121 7.1564 4.1738 18 1 5.2470 6.4493 4.9895 19 6 5.4197 8.4979 4.4151 20 7 5.3787 9.3588 3.4216 21 14 5.7605 9.0926 6.1527 22 1 5.7555 7.9345 7.0822 23 1 7.0880 9.7567 6.1972 24 1 4.7095 10.0595 6.5601 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 3.5046 0.9364 -2.1636 29 1 4.2631 -0.3975 -1.2313 30 1 6.7594 1.9842 -2.8904 31 1 5.0268 3.4980 -1.6610 32 1 6.0535 3.1460 -0.2428 33 1 5.1790 2.6753 1.7437 34 1 3.4330 2.8977 2.0092 35 1 5.3093 4.9275 0.7144 36 1 3.5635 5.1498 0.9799 37 1 3.9045 4.9027 3.4239 38 1 5.6503 4.6802 3.1577 39 1 5.7794 6.9329 2.1285 40 1 4.0335 7.1546 2.3950 41 1 5.5244 10.3026 3.5914 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385871354.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:43 Heat of formation + Delta-G solvation = -141.244645 kcal Electronic energy + Delta-G solvation = -21002.865870 eV Core-core repulsion = 17689.581312 eV Total energy + Delta-G solvation = -3313.284559 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.82806 -39.25042 -36.70811 -36.20239 -34.68272 -32.72269 -30.98525 -29.62510 -27.81716 -27.59553 -24.73911 -23.24914 -22.05045 -21.00374 -20.29070 -19.88739 -18.15572 -17.32340 -16.68954 -16.61265 -16.17200 -16.04908 -15.27004 -14.54992 -14.43936 -14.12310 -13.67449 -13.50064 -13.45491 -13.16923 -12.64107 -12.40479 -12.18591 -12.13525 -11.88093 -11.66558 -11.33961 -11.12035 -10.96713 -10.92029 -10.56214 -10.47648 -10.44851 -10.40900 -10.30358 -9.60799 -9.25392 -8.98259 -8.47603 -8.31140 -5.96004 -3.98207 2.13190 2.39410 3.32813 3.40045 3.44234 3.59095 3.98606 4.17191 4.35185 4.49069 4.64190 4.74742 4.85262 4.92384 5.00119 5.06438 5.24502 5.29397 5.33221 5.39556 5.45813 5.52044 5.67740 5.83954 5.84469 6.12756 6.17236 6.23134 6.48440 6.72925 6.81808 6.92454 7.02643 7.22424 7.30396 7.73036 7.73379 7.89299 8.05292 8.47821 9.09512 9.65565 11.15379 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.021388 B = 0.003477 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.816563 B = 8051.644319 C = 8993.737324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.365 6.365 3 C 0.464 3.536 4 O -0.474 6.474 5 C 0.081 3.919 6 H 0.095 0.905 7 C -0.106 4.106 8 C 0.084 3.916 9 H 0.071 0.929 10 O -0.558 6.558 11 C 0.013 3.987 12 N -0.507 5.507 13 C 0.053 3.947 14 C -0.111 4.111 15 C -0.109 4.109 16 C 0.021 3.979 17 C -0.519 4.519 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.896 5.896 21 Si 0.891 3.109 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.062 0.938 26 H 0.100 0.900 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.383 0.617 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.037 0.963 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.047 0.953 38 H 0.044 0.956 39 H 0.014 0.986 40 H 0.016 0.984 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.585 -21.735 -10.254 24.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.282 6.282 3 C 0.304 3.696 4 O -0.357 6.357 5 C -0.029 4.029 6 H 0.113 0.887 7 C -0.144 4.144 8 C 0.024 3.976 9 H 0.088 0.912 10 O -0.363 6.363 11 C -0.115 4.115 12 N -0.233 5.233 13 C -0.074 4.074 14 C -0.149 4.149 15 C -0.147 4.147 16 C -0.016 4.016 17 C -0.558 4.558 18 H 0.073 0.927 19 C -0.146 4.146 20 N -0.535 5.535 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.210 1.210 25 H 0.081 0.919 26 H 0.118 0.882 27 H 0.081 0.919 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.231 0.769 31 H 0.110 0.890 32 H 0.089 0.911 33 H 0.056 0.944 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.033 0.967 40 H 0.035 0.965 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.740 -21.275 -10.585 24.056 hybrid contribution 1.046 0.444 1.489 1.873 sum -2.694 -20.832 -9.096 22.890 Atomic orbital electron populations 1.23241 0.76325 1.03482 1.02689 1.86473 1.23389 1.33637 1.84681 1.23400 0.91365 0.81457 0.73375 1.90709 1.66299 1.36126 1.42598 1.21977 0.88733 0.91798 1.00355 0.88693 1.22599 0.95344 1.00389 0.96111 1.23065 0.95631 0.95334 0.83611 0.91162 1.86500 1.46930 1.77542 1.25366 1.23680 0.91805 0.97592 0.98383 1.63007 1.31528 1.15824 1.12909 1.22502 0.99720 0.98080 0.87110 1.21634 1.02008 0.92025 0.99188 1.21603 0.99705 1.00058 0.93339 1.19088 0.97034 0.88657 0.96810 1.21326 1.47953 0.92501 0.93978 0.92740 1.25039 0.95604 0.97036 0.96898 1.69983 1.50352 1.02361 1.30821 0.86557 0.77815 0.78763 0.84984 1.19784 1.21059 1.21016 0.91913 0.88193 0.91856 0.89095 0.88870 0.76897 0.88986 0.91094 0.94448 0.90948 0.92572 0.91349 0.93453 0.93704 0.96726 0.96543 0.93111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.56 101.05 1.07 1.37 16 2 O -0.36 -3.96 10.56 -39.26 -0.41 -4.37 16 3 C 0.46 6.06 7.30 36.00 0.26 6.33 16 4 O -0.47 -7.95 16.23 -18.75 -0.30 -8.25 16 5 C 0.08 0.91 2.91 -67.34 -0.20 0.71 16 6 H 0.10 0.89 7.81 -51.93 -0.41 0.48 16 7 C -0.11 -1.00 6.21 -24.59 -0.15 -1.15 16 8 C 0.08 0.75 4.32 -24.91 -0.11 0.64 16 9 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 10 O -0.56 -5.03 13.39 -35.23 -0.47 -5.50 16 11 C 0.01 0.15 5.97 -2.84 -0.02 0.13 16 12 N -0.51 -6.80 4.34 -224.75 -0.97 -7.77 16 13 C 0.05 0.77 4.54 -3.82 -0.02 0.75 16 14 C -0.11 -1.96 5.24 -26.73 -0.14 -2.10 16 15 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 16 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 17 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 18 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 19 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.51 13.29 55.43 0.74 -26.78 16 21 Si 0.89 22.01 29.54 -169.99 -5.02 16.98 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 25 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 26 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.55 8.13 -51.93 -0.42 0.12 16 28 H 0.09 0.97 8.05 -51.93 -0.42 0.56 16 29 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.38 1.92 9.11 45.56 0.42 2.33 16 31 H 0.09 1.09 8.06 -51.93 -0.42 0.67 16 32 H 0.07 0.76 6.91 -51.93 -0.36 0.40 16 33 H 0.04 0.48 7.96 -51.93 -0.41 0.07 16 34 H 0.07 1.09 8.07 -51.93 -0.42 0.67 16 35 H 0.06 0.97 7.14 -51.93 -0.37 0.60 16 36 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 340.99 15.07 5.14 5.14 Total: -1.00 -34.84 340.99 -7.46 -42.30 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -6.16 Total: -2.54 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: 0.01 Total: -9.20 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: -0.24 Total: -34.55 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -1.19 Total: -18.13 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.84 -7.46 -42.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385871354.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.949 kcal (2) G-P(sol) polarization free energy of solvation -34.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds