Wall clock time and date at job start Mon Mar 30 2020 05:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34233 * 117.00100 * 2 1 4 4 O 1.20825 * 119.99870 * 0.02562 * 3 2 1 5 5 C 1.50692 * 119.99965 * 180.02562 * 3 2 1 6 6 H 1.09002 * 110.42463 * 302.31136 * 5 3 2 7 7 C 1.54909 * 110.37560 * 64.63097 * 5 3 2 8 8 C 1.55135 * 101.65392 * 155.89748 * 7 5 3 9 9 H 1.09004 * 110.70681 * 82.72684 * 8 7 5 10 10 O 1.42904 * 110.70619 * 205.96466 * 8 7 5 11 11 C 1.54322 * 103.02006 * 324.34772 * 8 7 5 12 12 N 1.47439 * 107.23490 * 22.28319 * 11 8 7 13 13 C 1.46901 * 110.99961 * 123.25626 * 12 11 8 14 14 C 1.53000 * 109.46769 * 69.87863 * 13 12 11 15 15 C 1.53001 * 109.46886 * 180.02562 * 14 13 12 16 16 C 1.53000 * 109.46886 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.46912 * 179.97438 * 16 15 14 18 18 H 1.08009 * 120.00339 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00310 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99776 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00473 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47163 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47233 * 120.00015 * 21 19 17 24 24 H 1.48504 * 109.47158 * 239.99855 * 21 19 17 25 25 H 1.08999 * 109.47293 * 59.99674 * 1 2 3 26 26 H 1.09001 * 109.47250 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47233 * 299.99595 * 1 2 3 28 28 H 1.08997 * 110.98656 * 37.80800 * 7 5 3 29 29 H 1.08995 * 110.98825 * 273.98759 * 7 5 3 30 30 H 0.96705 * 113.99986 * 175.05622 * 10 8 7 31 31 H 1.09003 * 109.88473 * 262.87599 * 11 8 7 32 32 H 1.08997 * 109.88802 * 141.69469 * 11 8 7 33 33 H 1.09002 * 109.47401 * 309.87571 * 13 12 11 34 34 H 1.09001 * 109.46874 * 189.87583 * 13 12 11 35 35 H 1.09001 * 109.47194 * 299.99524 * 14 13 12 36 36 H 1.08992 * 109.47399 * 59.99697 * 14 13 12 37 37 H 1.09001 * 109.47109 * 299.99380 * 15 14 13 38 38 H 1.09002 * 109.47508 * 59.99571 * 15 14 13 39 39 H 1.08992 * 109.47098 * 299.99158 * 16 15 14 40 40 H 1.09001 * 109.47583 * 60.00267 * 16 15 14 41 41 H 0.96998 * 120.00187 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2748 -0.0006 6 1 3.9750 0.7493 0.8625 7 6 4.1369 0.6820 -1.3131 8 6 5.5106 1.3965 -1.4084 9 1 6.2542 0.8854 -0.7969 10 8 5.9433 1.4802 -2.7678 11 6 5.2118 2.8012 -0.8434 12 7 4.0077 2.6859 -0.0004 13 6 4.2752 3.1536 1.3663 14 6 4.4672 4.6715 1.3573 15 6 4.7464 5.1586 2.7806 16 6 4.9377 6.6766 2.7718 17 6 5.2121 7.1564 4.1738 18 1 5.2470 6.4493 4.9895 19 6 5.4197 8.4979 4.4151 20 7 5.3787 9.3588 3.4216 21 14 5.7605 9.0926 6.1527 22 1 5.7555 7.9345 7.0822 23 1 7.0880 9.7567 6.1972 24 1 4.7095 10.0595 6.5601 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 3.5046 0.9364 -2.1636 29 1 4.2631 -0.3975 -1.2313 30 1 6.7594 1.9842 -2.8904 31 1 5.0268 3.4980 -1.6610 32 1 6.0535 3.1460 -0.2428 33 1 5.1790 2.6753 1.7437 34 1 3.4330 2.8977 2.0092 35 1 5.3093 4.9275 0.7144 36 1 3.5635 5.1498 0.9799 37 1 3.9045 4.9027 3.4239 38 1 5.6503 4.6802 3.1577 39 1 5.7794 6.9329 2.1285 40 1 4.0335 7.1546 2.3950 41 1 5.5244 10.3026 3.5914 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385871354.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:43 Heat of formation + Delta-G solvation = -166.973728 kcal Electronic energy + Delta-G solvation = -21003.981567 eV Core-core repulsion = 17689.581312 eV Total energy + Delta-G solvation = -3314.400255 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.77069 -40.13129 -37.59538 -37.25849 -36.24007 -34.55349 -32.39272 -30.50814 -29.40674 -28.32958 -26.38878 -24.43731 -23.17984 -22.30789 -21.39591 -21.23416 -19.01141 -18.41983 -18.17560 -17.57920 -17.47483 -16.97741 -16.54942 -16.31781 -15.67774 -15.05517 -14.72580 -14.56560 -14.35833 -14.28900 -14.21207 -13.65361 -13.54044 -13.29511 -13.03982 -12.84823 -12.77122 -12.68162 -12.29298 -12.20411 -12.05050 -11.86830 -11.79282 -11.45054 -11.35139 -11.31708 -11.07817 -11.01115 -10.56838 -9.41988 -8.20424 -6.32237 1.15383 1.39103 1.39978 1.53389 1.55536 2.40410 2.75537 3.12294 3.19980 3.39673 3.60992 3.89100 3.93553 4.04000 4.14648 4.18496 4.31630 4.31991 4.35195 4.45503 4.50195 4.64736 4.70223 4.74735 4.80561 4.85991 4.91810 5.05788 5.19616 5.25092 5.33012 5.33400 5.53695 5.74977 5.78567 5.86224 5.93587 6.24597 6.77720 6.84172 6.85560 7.37261 8.91816 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.021388 B = 0.003477 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.816563 B = 8051.644319 C = 8993.737324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.359 6.359 3 C 0.465 3.535 4 O -0.522 6.522 5 C 0.082 3.918 6 H 0.123 0.877 7 C -0.102 4.102 8 C 0.095 3.905 9 H 0.098 0.902 10 O -0.573 6.573 11 C 0.012 3.988 12 N -0.534 5.534 13 C 0.065 3.935 14 C -0.100 4.100 15 C -0.095 4.095 16 C 0.023 3.977 17 C -0.543 4.543 18 H 0.062 0.938 19 C -0.004 4.004 20 N -0.935 5.935 21 Si 0.968 3.032 22 H -0.260 1.260 23 H -0.276 1.276 24 H -0.279 1.279 25 H 0.057 0.943 26 H 0.137 0.863 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.121 0.879 30 H 0.400 0.600 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.041 0.959 37 H 0.046 0.954 38 H 0.059 0.941 39 H -0.008 1.008 40 H -0.017 1.017 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.503 -24.041 -9.271 25.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.276 6.276 3 C 0.307 3.693 4 O -0.410 6.410 5 C -0.028 4.028 6 H 0.140 0.860 7 C -0.140 4.140 8 C 0.035 3.965 9 H 0.116 0.884 10 O -0.381 6.381 11 C -0.116 4.116 12 N -0.260 5.260 13 C -0.062 4.062 14 C -0.138 4.138 15 C -0.133 4.133 16 C -0.014 4.014 17 C -0.581 4.581 18 H 0.080 0.920 19 C -0.202 4.202 20 N -0.576 5.576 21 Si 0.792 3.208 22 H -0.184 1.184 23 H -0.202 1.202 24 H -0.205 1.205 25 H 0.076 0.924 26 H 0.155 0.845 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.139 0.861 30 H 0.250 0.750 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.011 0.989 40 H 0.001 0.999 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.645 -23.616 -9.615 25.636 hybrid contribution 0.653 1.164 1.107 1.734 sum -1.992 -22.452 -8.509 24.093 Atomic orbital electron populations 1.23523 0.74978 1.05738 1.02182 1.86471 1.24732 1.32373 1.83981 1.23913 0.92255 0.81290 0.71873 1.90693 1.67454 1.37715 1.45108 1.22116 0.87469 0.90751 1.02445 0.85970 1.22622 0.95143 1.01935 0.94270 1.23029 0.95993 0.93674 0.83841 0.88407 1.86463 1.48228 1.77920 1.25459 1.23692 0.91052 0.99086 0.97727 1.62795 1.32996 1.17915 1.12313 1.22241 1.00518 0.95340 0.88094 1.21438 1.00772 0.94747 0.96859 1.21396 1.00325 0.96066 0.95559 1.19016 0.94423 0.92484 0.95498 1.21770 1.48116 0.93210 0.95027 0.92026 1.26051 0.95105 0.97233 1.01786 1.70123 1.51106 1.02864 1.33489 0.85356 0.77851 0.78435 0.79136 1.18393 1.20161 1.20494 0.92401 0.84516 0.92500 0.90962 0.86102 0.74960 0.90676 0.90500 0.91935 0.91735 0.92271 0.94022 0.93526 0.92197 0.98948 0.99863 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.65 16 2 O -0.36 -7.28 10.56 -51.44 -0.54 -7.82 16 3 C 0.46 11.85 7.30 71.23 0.52 12.37 16 4 O -0.52 -17.95 16.23 21.97 0.36 -17.60 16 5 C 0.08 1.67 2.91 44.64 0.13 1.80 16 6 H 0.12 1.86 7.81 -2.39 -0.02 1.85 16 7 C -0.10 -1.67 6.21 31.98 0.20 -1.47 16 8 C 0.09 1.43 4.32 31.77 0.14 1.57 16 9 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 10 O -0.57 -9.08 13.39 -148.98 -1.99 -11.08 16 11 C 0.01 0.25 5.97 86.65 0.52 0.76 16 12 N -0.53 -13.86 4.34 -864.96 -3.75 -17.61 16 13 C 0.07 1.82 4.54 86.30 0.39 2.21 16 14 C -0.10 -3.60 5.24 30.59 0.16 -3.44 16 15 C -0.10 -4.03 5.15 30.59 0.16 -3.87 16 16 C 0.02 1.26 4.97 29.85 0.15 1.41 16 17 C -0.54 -31.87 9.11 25.60 0.23 -31.64 16 18 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 19 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 20 N -0.94 -58.61 13.29 21.45 0.28 -58.33 16 21 Si 0.97 45.08 29.54 68.60 2.03 47.11 16 22 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 23 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 24 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 25 H 0.06 0.96 8.13 -2.39 -0.02 0.94 16 26 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.06 0.96 8.13 -2.39 -0.02 0.94 16 28 H 0.07 1.47 8.05 -2.39 -0.02 1.45 16 29 H 0.12 1.32 8.14 -2.39 -0.02 1.31 16 30 H 0.40 3.16 9.11 -74.05 -0.67 2.49 16 31 H 0.07 1.79 8.06 -2.39 -0.02 1.77 16 32 H 0.08 1.50 6.91 -2.39 -0.02 1.48 16 33 H 0.06 1.43 7.96 -2.39 -0.02 1.41 16 34 H 0.06 1.90 8.07 -2.39 -0.02 1.88 16 35 H 0.06 2.06 7.14 -2.39 -0.02 2.04 16 36 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 39 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 40 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 41 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -77.17 340.99 0.96 -76.20 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 0.33 Total: 7.57 kcal Atomic # 6 Polarization: -22.69 SS G_CDS: 4.25 Total: -18.44 kcal Atomic # 7 Polarization: -72.47 SS G_CDS: -3.47 Total: -75.94 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -2.18 Total: -36.50 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -77.17 0.96 -76.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385871354.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.771 kcal (2) G-P(sol) polarization free energy of solvation -77.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds