Wall clock time and date at job start Mon Mar 30 2020 05:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34231 * 116.99690 * 2 1 4 4 O 1.20819 * 120.00199 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99544 * 180.02562 * 3 2 1 6 6 H 1.08991 * 109.88012 * 9.21495 * 5 3 2 7 7 C 1.54316 * 109.88748 * 248.17794 * 5 3 2 8 8 C 1.55135 * 103.02188 * 218.31093 * 7 5 3 9 9 H 1.09003 * 110.99427 * 277.56804 * 8 7 5 10 10 O 1.42894 * 110.99154 * 153.78229 * 8 7 5 11 11 C 1.54909 * 101.68595 * 35.67453 * 8 7 5 12 12 N 1.47443 * 109.88596 * 130.41365 * 5 3 2 13 13 C 1.46903 * 111.00059 * 356.14570 * 12 5 3 14 14 C 1.53007 * 109.46920 * 195.88082 * 13 12 5 15 15 C 1.53003 * 109.46835 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.46810 * 180.02562 * 15 14 13 17 17 C 1.50700 * 109.47250 * 179.97438 * 16 15 14 18 18 H 1.08005 * 119.99849 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00524 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99642 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00326 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46755 * 90.00453 * 21 19 17 23 23 H 1.48494 * 109.47401 * 210.00212 * 21 19 17 24 24 H 1.48501 * 109.47202 * 330.00557 * 21 19 17 25 25 H 1.08994 * 109.47446 * 59.99454 * 1 2 3 26 26 H 1.08997 * 109.47148 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46607 * 299.99679 * 1 2 3 28 28 H 1.09003 * 110.69971 * 99.92991 * 7 5 3 29 29 H 1.09003 * 110.70529 * 336.69927 * 7 5 3 30 30 H 0.96703 * 113.99899 * 183.14707 * 10 8 7 31 31 H 1.09001 * 110.37260 * 81.73878 * 11 8 7 32 32 H 1.08995 * 110.37669 * 204.08251 * 11 8 7 33 33 H 1.08998 * 109.46977 * 315.87413 * 13 12 5 34 34 H 1.08992 * 109.47262 * 75.87993 * 13 12 5 35 35 H 1.08999 * 109.46770 * 300.00026 * 14 13 12 36 36 H 1.08997 * 109.47117 * 60.00351 * 14 13 12 37 37 H 1.09001 * 109.46722 * 299.99735 * 15 14 13 38 38 H 1.08997 * 109.47000 * 60.00256 * 15 14 13 39 39 H 1.09002 * 109.47279 * 299.99958 * 16 15 14 40 40 H 1.08995 * 109.47743 * 59.99900 * 16 15 14 41 41 H 0.96996 * 120.00353 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 1 3.9894 0.2840 -0.1651 7 6 4.0629 1.8407 1.3465 8 6 5.2512 2.7463 0.9285 9 1 6.1597 2.1598 0.7912 10 8 5.4585 3.7909 1.8812 11 6 4.7504 3.3178 -0.4214 12 7 4.0198 2.1990 -1.0562 13 6 2.8844 2.6929 -1.8468 14 6 3.3998 3.3129 -3.1472 15 6 2.2173 3.8279 -3.9703 16 6 2.7326 4.4472 -5.2710 17 6 1.5679 4.9540 -6.0820 18 1 0.5609 4.8456 -5.7070 19 6 1.7879 5.5570 -7.3023 20 7 3.0141 5.6895 -7.7587 21 14 0.3441 6.1845 -8.3078 22 1 0.0617 7.5956 -7.9412 23 1 0.6759 6.1056 -9.7531 24 1 -0.8530 5.3514 -8.0286 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 4.4021 1.0373 2.0004 29 1 3.2818 2.4281 1.8292 30 1 6.1597 4.4111 1.6386 31 1 4.0805 4.1607 -0.2515 32 1 5.5940 3.6215 -1.0413 33 1 2.2158 1.8642 -2.0794 34 1 2.3436 3.4465 -1.2744 35 1 4.0685 4.1416 -2.9146 36 1 3.9405 2.5592 -3.7197 37 1 1.5482 2.9994 -4.2029 38 1 1.6769 4.5817 -3.3976 39 1 3.4019 5.2756 -5.0388 40 1 3.2727 3.6933 -5.8435 41 1 3.1690 6.1134 -8.6173 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385871372.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:51 Heat of formation + Delta-G solvation = -136.284196 kcal Electronic energy + Delta-G solvation = -21366.359747 eV Core-core repulsion = 18053.290289 eV Total energy + Delta-G solvation = -3313.069457 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.33130 -39.06997 -36.89546 -36.05507 -34.69672 -32.70629 -30.93555 -29.75215 -27.86464 -27.56214 -24.66349 -23.18496 -22.04655 -21.25068 -20.28082 -19.92506 -18.19453 -17.53424 -16.82407 -16.32539 -16.14823 -15.94628 -15.33111 -14.76881 -14.41744 -14.06242 -13.79736 -13.65580 -13.35863 -12.96612 -12.52566 -12.46950 -12.35065 -12.03550 -11.99427 -11.60304 -11.33458 -11.21419 -10.96115 -10.89557 -10.66700 -10.48571 -10.40456 -10.33067 -10.24672 -9.58943 -9.23503 -8.98422 -8.52658 -8.29944 -5.95234 -3.97125 1.90479 2.45548 3.34664 3.40457 3.44329 3.52714 4.05419 4.14488 4.30496 4.50135 4.61179 4.73545 4.92617 5.01663 5.03316 5.10823 5.26767 5.34320 5.40335 5.42994 5.46085 5.63706 5.71354 5.78314 5.90083 6.10209 6.16103 6.26369 6.49630 6.67145 6.80016 6.89714 7.02445 7.23217 7.32152 7.53853 7.74028 7.90038 8.06012 8.49375 9.10188 9.66513 11.16204 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019937 B = 0.003902 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.121829 B = 7173.504397 C = 8225.436850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.449 3.551 4 O -0.496 6.496 5 C 0.081 3.919 6 H 0.121 0.879 7 C -0.123 4.123 8 C 0.097 3.903 9 H 0.081 0.919 10 O -0.560 6.560 11 C 0.006 3.994 12 N -0.497 5.497 13 C 0.040 3.960 14 C -0.110 4.110 15 C -0.108 4.108 16 C 0.022 3.978 17 C -0.519 4.519 18 H 0.054 0.946 19 C 0.056 3.944 20 N -0.897 5.897 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 H 0.066 0.934 26 H 0.101 0.899 27 H 0.062 0.938 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.384 0.616 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.015 0.985 40 H 0.016 0.984 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.335 -11.066 20.000 23.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.290 3.710 4 O -0.382 6.382 5 C -0.029 4.029 6 H 0.139 0.861 7 C -0.161 4.161 8 C 0.038 3.962 9 H 0.098 0.902 10 O -0.365 6.365 11 C -0.122 4.122 12 N -0.223 5.223 13 C -0.087 4.087 14 C -0.148 4.148 15 C -0.147 4.147 16 C -0.015 4.015 17 C -0.558 4.558 18 H 0.072 0.928 19 C -0.145 4.145 20 N -0.536 5.536 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.085 0.915 26 H 0.120 0.880 27 H 0.081 0.919 28 H 0.111 0.889 29 H 0.105 0.895 30 H 0.232 0.768 31 H 0.083 0.917 32 H 0.112 0.888 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.033 0.967 40 H 0.034 0.966 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.019 -11.285 19.819 23.006 hybrid contribution -1.163 1.118 -0.548 1.704 sum 1.856 -10.167 19.271 21.867 Atomic orbital electron populations 1.23298 0.76187 1.03751 1.02783 1.86523 1.23607 1.33442 1.83831 1.24237 0.92369 0.81651 0.72700 1.90721 1.67160 1.36006 1.44311 1.22409 0.86247 1.01262 0.92954 0.86125 1.22702 0.98490 0.99598 0.95309 1.22876 0.97401 0.88540 0.87410 0.90155 1.86480 1.60640 1.42094 1.47320 1.23940 0.99507 0.93831 0.94887 1.64222 1.24081 1.15830 1.18200 1.22924 0.90869 0.99555 0.95340 1.21639 0.99381 0.99799 0.93999 1.21588 0.95917 0.99187 0.97967 1.19082 0.96307 0.95572 0.90521 1.21294 0.93382 1.37827 1.03254 0.92812 1.25024 0.95574 0.96153 0.97734 1.69967 1.19473 1.44262 1.19914 0.86612 0.82895 0.79230 0.79374 1.20697 1.21223 1.19921 0.91531 0.88022 0.91947 0.88935 0.89524 0.76787 0.91660 0.88845 0.91796 0.91667 0.92537 0.91752 0.93656 0.93603 0.96710 0.96600 0.93074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 101.05 1.07 1.38 16 2 O -0.36 -4.17 10.57 -39.26 -0.41 -4.59 16 3 C 0.45 5.87 5.02 36.01 0.18 6.05 16 4 O -0.50 -7.86 13.49 -18.74 -0.25 -8.12 16 5 C 0.08 0.90 3.88 -67.88 -0.26 0.64 16 6 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 7 C -0.12 -1.19 6.19 -24.91 -0.15 -1.34 16 8 C 0.10 0.90 4.42 -24.59 -0.11 0.79 16 9 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 10 O -0.56 -5.23 13.47 -35.23 -0.47 -5.71 16 11 C 0.01 0.07 5.82 -2.24 -0.01 0.06 16 12 N -0.50 -6.54 5.12 -224.64 -1.15 -7.69 16 13 C 0.04 0.64 3.39 -3.82 -0.01 0.63 16 14 C -0.11 -2.01 5.33 -26.73 -0.14 -2.15 16 15 C -0.11 -2.38 5.15 -26.73 -0.14 -2.52 16 16 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 17 C -0.52 -15.28 9.11 -34.44 -0.31 -15.59 16 18 H 0.05 1.54 7.74 -52.48 -0.41 1.14 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.90 -27.59 13.29 55.43 0.74 -26.85 16 21 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 25 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 26 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.55 8.13 -51.92 -0.42 0.13 16 28 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.09 1.00 7.76 -51.93 -0.40 0.59 16 30 H 0.38 1.98 9.12 45.56 0.42 2.39 16 31 H 0.07 0.86 7.53 -51.93 -0.39 0.47 16 32 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 1.06 6.48 -51.93 -0.34 0.73 16 34 H 0.07 1.15 6.07 -51.93 -0.32 0.83 16 35 H 0.06 1.01 7.70 -51.93 -0.40 0.61 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 334.50 15.07 5.04 5.04 Total: -1.00 -34.33 334.50 -7.72 -42.04 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -6.04 Total: -1.26 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: -0.14 Total: -10.04 kcal Atomic # 7 Polarization: -34.13 SS G_CDS: -0.41 Total: -34.54 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -1.14 Total: -18.41 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.33 -7.72 -42.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385871372.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.242 kcal (2) G-P(sol) polarization free energy of solvation -34.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds