Wall clock time and date at job start Mon Mar 30 2020 05:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34231 * 116.99690 * 2 1 4 4 O 1.20819 * 120.00199 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99544 * 180.02562 * 3 2 1 6 6 H 1.08991 * 109.88012 * 9.21495 * 5 3 2 7 7 C 1.54316 * 109.88748 * 248.17794 * 5 3 2 8 8 C 1.55135 * 103.02188 * 218.31093 * 7 5 3 9 9 H 1.09003 * 110.99427 * 277.56804 * 8 7 5 10 10 O 1.42894 * 110.99154 * 153.78229 * 8 7 5 11 11 C 1.54909 * 101.68595 * 35.67453 * 8 7 5 12 12 N 1.47443 * 109.88596 * 130.41365 * 5 3 2 13 13 C 1.46903 * 111.00059 * 356.14570 * 12 5 3 14 14 C 1.53007 * 109.46920 * 195.88082 * 13 12 5 15 15 C 1.53003 * 109.46835 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.46810 * 180.02562 * 15 14 13 17 17 C 1.50700 * 109.47250 * 179.97438 * 16 15 14 18 18 H 1.08005 * 119.99849 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00524 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99642 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00326 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46755 * 90.00453 * 21 19 17 23 23 H 1.48494 * 109.47401 * 210.00212 * 21 19 17 24 24 H 1.48501 * 109.47202 * 330.00557 * 21 19 17 25 25 H 1.08994 * 109.47446 * 59.99454 * 1 2 3 26 26 H 1.08997 * 109.47148 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46607 * 299.99679 * 1 2 3 28 28 H 1.09003 * 110.69971 * 99.92991 * 7 5 3 29 29 H 1.09003 * 110.70529 * 336.69927 * 7 5 3 30 30 H 0.96703 * 113.99899 * 183.14707 * 10 8 7 31 31 H 1.09001 * 110.37260 * 81.73878 * 11 8 7 32 32 H 1.08995 * 110.37669 * 204.08251 * 11 8 7 33 33 H 1.08998 * 109.46977 * 315.87413 * 13 12 5 34 34 H 1.08992 * 109.47262 * 75.87993 * 13 12 5 35 35 H 1.08999 * 109.46770 * 300.00026 * 14 13 12 36 36 H 1.08997 * 109.47117 * 60.00351 * 14 13 12 37 37 H 1.09001 * 109.46722 * 299.99735 * 15 14 13 38 38 H 1.08997 * 109.47000 * 60.00256 * 15 14 13 39 39 H 1.09002 * 109.47279 * 299.99958 * 16 15 14 40 40 H 1.08995 * 109.47743 * 59.99900 * 16 15 14 41 41 H 0.96996 * 120.00353 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 1 3.9894 0.2840 -0.1651 7 6 4.0629 1.8407 1.3465 8 6 5.2512 2.7463 0.9285 9 1 6.1597 2.1598 0.7912 10 8 5.4585 3.7909 1.8812 11 6 4.7504 3.3178 -0.4214 12 7 4.0198 2.1990 -1.0562 13 6 2.8844 2.6929 -1.8468 14 6 3.3998 3.3129 -3.1472 15 6 2.2173 3.8279 -3.9703 16 6 2.7326 4.4472 -5.2710 17 6 1.5679 4.9540 -6.0820 18 1 0.5609 4.8456 -5.7070 19 6 1.7879 5.5570 -7.3023 20 7 3.0141 5.6895 -7.7587 21 14 0.3441 6.1845 -8.3078 22 1 0.0617 7.5956 -7.9412 23 1 0.6759 6.1056 -9.7531 24 1 -0.8530 5.3514 -8.0286 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 4.4021 1.0373 2.0004 29 1 3.2818 2.4281 1.8292 30 1 6.1597 4.4111 1.6386 31 1 4.0805 4.1607 -0.2515 32 1 5.5940 3.6215 -1.0413 33 1 2.2158 1.8642 -2.0794 34 1 2.3436 3.4465 -1.2744 35 1 4.0685 4.1416 -2.9146 36 1 3.9405 2.5592 -3.7197 37 1 1.5482 2.9994 -4.2029 38 1 1.6769 4.5817 -3.3976 39 1 3.4019 5.2756 -5.0388 40 1 3.2727 3.6933 -5.8435 41 1 3.1690 6.1134 -8.6173 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385871372.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:50 Heat of formation + Delta-G solvation = -162.034024 kcal Electronic energy + Delta-G solvation = -21367.476343 eV Core-core repulsion = 18053.290289 eV Total energy + Delta-G solvation = -3314.186054 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.32214 -39.97418 -37.80324 -37.18119 -36.27833 -34.59269 -32.39724 -30.65365 -29.47498 -28.39557 -26.40954 -24.31778 -23.35196 -22.39937 -21.69427 -21.22010 -19.12012 -18.45973 -18.40155 -17.72021 -17.18990 -16.88498 -16.58999 -16.52573 -15.83172 -15.14220 -14.97812 -14.66752 -14.40507 -14.35155 -13.91794 -13.68558 -13.60135 -13.24790 -13.15513 -13.07262 -12.83828 -12.61648 -12.30348 -12.27529 -12.13378 -11.98768 -11.82785 -11.56340 -11.37725 -11.34499 -11.07811 -10.98036 -10.57418 -9.60696 -8.21863 -6.33454 0.90759 1.37694 1.39522 1.50789 1.58918 2.39039 2.58278 3.10613 3.20998 3.34830 3.51134 3.77627 3.92994 4.01418 4.14414 4.23479 4.24876 4.26107 4.36046 4.42912 4.49430 4.60129 4.64496 4.72972 4.73577 4.83613 4.88919 5.00997 5.11607 5.18671 5.22648 5.31018 5.49838 5.63155 5.68578 5.74165 5.83246 6.23610 6.56229 6.82643 6.83110 7.35638 8.90070 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019937 B = 0.003902 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.121829 B = 7173.504397 C = 8225.436850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.447 3.553 4 O -0.532 6.532 5 C 0.079 3.921 6 H 0.149 0.851 7 C -0.120 4.120 8 C 0.109 3.891 9 H 0.109 0.891 10 O -0.575 6.575 11 C 0.002 3.998 12 N -0.500 5.500 13 C 0.058 3.942 14 C -0.099 4.099 15 C -0.097 4.097 16 C 0.027 3.973 17 C -0.548 4.548 18 H 0.055 0.945 19 C 0.001 3.999 20 N -0.932 5.932 21 Si 0.966 3.034 22 H -0.272 1.272 23 H -0.278 1.278 24 H -0.265 1.265 25 H 0.053 0.947 26 H 0.136 0.864 27 H 0.064 0.936 28 H 0.124 0.876 29 H 0.063 0.937 30 H 0.401 0.599 31 H 0.042 0.958 32 H 0.102 0.898 33 H 0.056 0.944 34 H 0.047 0.953 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.045 0.955 38 H 0.041 0.959 39 H -0.008 1.008 40 H -0.006 1.006 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.391 -12.136 20.790 24.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.290 3.710 4 O -0.421 6.421 5 C -0.029 4.029 6 H 0.166 0.834 7 C -0.158 4.158 8 C 0.049 3.951 9 H 0.127 0.873 10 O -0.383 6.383 11 C -0.126 4.126 12 N -0.226 5.226 13 C -0.069 4.069 14 C -0.137 4.137 15 C -0.135 4.135 16 C -0.010 4.010 17 C -0.586 4.586 18 H 0.073 0.927 19 C -0.197 4.197 20 N -0.572 5.572 21 Si 0.790 3.210 22 H -0.197 1.197 23 H -0.203 1.203 24 H -0.189 1.189 25 H 0.071 0.929 26 H 0.154 0.846 27 H 0.083 0.917 28 H 0.142 0.858 29 H 0.082 0.918 30 H 0.252 0.748 31 H 0.060 0.940 32 H 0.120 0.880 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.010 0.990 40 H 0.012 0.988 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.089 -12.368 20.627 24.248 hybrid contribution -1.170 1.436 -0.771 2.007 sum 1.919 -10.931 19.856 22.747 Atomic orbital electron populations 1.23552 0.74944 1.05859 1.02263 1.86518 1.24879 1.32606 1.83294 1.24665 0.93193 0.81494 0.71617 1.90712 1.68067 1.37189 1.46083 1.22652 0.85129 1.02006 0.93163 0.83358 1.22747 0.98019 1.00371 0.94679 1.22872 0.98120 0.88452 0.85660 0.87310 1.86446 1.61766 1.42716 1.47377 1.24036 0.99071 0.92811 0.96710 1.64173 1.22669 1.16420 1.19324 1.22546 0.91458 0.98601 0.94345 1.21453 0.97692 0.99836 0.94682 1.21391 0.97195 0.98770 0.96128 1.18982 0.95315 0.94312 0.92427 1.21706 0.94039 1.38608 1.04252 0.92656 1.25983 0.98727 0.96059 0.98930 1.70091 1.21800 1.44765 1.20543 0.85441 0.79113 0.78848 0.77610 1.19700 1.20318 1.18932 0.92859 0.84612 0.91726 0.85817 0.91813 0.74756 0.93962 0.87979 0.92510 0.93495 0.92429 0.91775 0.93643 0.93991 0.98972 0.98768 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.56 113.37 1.20 1.67 16 2 O -0.36 -7.89 10.57 -51.43 -0.54 -8.43 16 3 C 0.45 11.42 5.02 71.24 0.36 11.78 16 4 O -0.53 -17.17 13.49 21.99 0.30 -16.88 16 5 C 0.08 1.63 3.88 44.51 0.17 1.81 16 6 H 0.15 2.26 8.14 -2.39 -0.02 2.24 16 7 C -0.12 -2.07 6.19 31.77 0.20 -1.87 16 8 C 0.11 1.75 4.42 31.98 0.14 1.89 16 9 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 10 O -0.57 -9.65 13.47 -148.98 -2.01 -11.65 16 11 C 0.00 0.04 5.82 86.75 0.50 0.54 16 12 N -0.50 -12.64 5.12 -864.63 -4.43 -17.07 16 13 C 0.06 1.88 3.39 86.30 0.29 2.18 16 14 C -0.10 -3.65 5.33 30.60 0.16 -3.49 16 15 C -0.10 -4.35 5.15 30.59 0.16 -4.20 16 16 C 0.03 1.49 4.97 29.85 0.15 1.64 16 17 C -0.55 -32.80 9.11 25.60 0.23 -32.57 16 18 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 19 C 0.00 0.05 5.46 84.66 0.46 0.51 16 20 N -0.93 -58.07 13.29 21.45 0.28 -57.79 16 21 Si 0.97 45.53 29.54 68.60 2.03 47.55 16 22 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 24 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 25 H 0.05 1.07 8.13 -2.39 -0.02 1.06 16 26 H 0.14 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.06 1.10 8.13 -2.38 -0.02 1.08 16 28 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.06 1.42 7.76 -2.39 -0.02 1.40 16 30 H 0.40 3.35 9.12 -74.06 -0.68 2.68 16 31 H 0.04 1.13 7.53 -2.39 -0.02 1.11 16 32 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.06 1.90 6.48 -2.39 -0.02 1.89 16 34 H 0.05 1.71 6.07 -2.39 -0.01 1.69 16 35 H 0.06 2.10 7.70 -2.39 -0.02 2.08 16 36 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 39 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 40 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 41 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -74.96 334.50 -0.01 -74.97 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 0.33 Total: 9.41 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: 4.03 Total: -20.12 kcal Atomic # 7 Polarization: -70.71 SS G_CDS: -4.14 Total: -74.86 kcal Atomic # 8 Polarization: -34.71 SS G_CDS: -2.25 Total: -36.96 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -74.96 -0.01 -74.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385871372.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.065 kcal (2) G-P(sol) polarization free energy of solvation -74.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds