Wall clock time and date at job start Mon Mar 30 2020 05:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00297 * 2 1 4 4 H 1.48499 * 109.47561 * 270.00518 * 3 2 1 5 5 H 1.48506 * 109.46752 * 30.00320 * 3 2 1 6 6 H 1.48499 * 109.47055 * 150.00435 * 3 2 1 7 7 C 1.37873 * 119.99881 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00504 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00170 * 359.97438 * 7 2 1 10 10 O 1.42894 * 109.47448 * 180.02562 * 9 7 2 11 11 C 1.42901 * 114.00045 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47048 * 180.02562 * 11 10 9 13 13 N 1.46905 * 109.46975 * 64.99845 * 12 11 10 14 14 C 1.46905 * 110.99730 * 179.97438 * 13 12 11 15 15 C 1.53039 * 109.46064 * 204.99869 * 14 13 12 16 16 C 1.53194 * 109.31509 * 178.62967 * 15 14 13 17 17 N 1.46931 * 108.88917 * 54.56285 * 16 15 14 18 18 C 1.34777 * 120.62244 * 126.46537 * 17 16 15 19 19 N 1.34780 * 119.99432 * 174.77175 * 18 17 16 20 20 O 1.21578 * 120.00517 * 354.76364 * 18 17 16 21 21 C 1.46957 * 118.71860 * 306.64211 * 17 16 15 22 22 C 1.53045 * 109.44743 * 84.94022 * 14 13 12 23 23 H 0.97005 * 119.99967 * 359.97438 * 1 2 3 24 24 H 1.09010 * 109.47307 * 59.99922 * 9 7 2 25 25 H 1.09001 * 109.47510 * 300.00397 * 9 7 2 26 26 H 1.08998 * 109.47731 * 60.00119 * 11 10 9 27 27 H 1.09003 * 109.47310 * 299.99478 * 11 10 9 28 28 H 1.09000 * 109.47270 * 304.99847 * 12 11 10 29 29 H 1.09006 * 109.46947 * 184.99819 * 12 11 10 30 30 H 1.00895 * 110.99950 * 303.95283 * 13 12 11 31 31 H 1.09001 * 109.46130 * 324.97415 * 14 13 12 32 32 H 1.09003 * 109.49423 * 58.67311 * 15 14 13 33 33 H 1.09001 * 109.52532 * 298.59819 * 15 14 13 34 34 H 1.08996 * 109.58537 * 174.42051 * 16 15 14 35 35 H 1.09001 * 109.58540 * 294.70814 * 16 15 14 36 36 H 0.97003 * 119.99848 * 4.96458 * 19 18 17 37 37 H 0.96996 * 119.99963 * 184.96650 * 19 18 17 38 38 H 1.09001 * 109.46823 * 293.57716 * 21 17 16 39 39 H 1.08999 * 109.71188 * 173.28995 * 21 17 16 40 40 H 1.08998 * 109.49447 * 301.33072 * 22 14 13 41 41 H 1.09000 * 109.49736 * 61.42087 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 2.1795 -3.5853 -0.0005 11 6 1.5649 -4.8754 -0.0011 12 6 2.6479 -5.9562 -0.0004 13 7 3.4070 -5.8879 1.2554 14 6 4.4577 -6.9140 1.2919 15 6 4.7965 -7.2454 2.7470 16 6 5.8678 -8.3399 2.7812 17 7 7.0185 -7.9045 1.9779 18 6 8.2595 -7.8973 2.5037 19 7 9.3188 -7.5971 1.7264 20 8 8.4233 -8.1615 3.6791 21 6 6.7894 -7.4734 0.5918 22 6 5.7078 -6.3886 0.5822 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8896 26 1 0.9450 -4.9822 -0.8913 27 1 0.9445 -4.9827 0.8887 28 1 3.3220 -5.7956 -0.8417 29 1 2.1818 -6.9375 -0.0904 30 1 3.7955 -4.9670 1.3934 31 1 4.1046 -7.8134 0.7873 32 1 3.9003 -7.5972 3.2581 33 1 5.1728 -6.3523 3.2459 34 1 6.1839 -8.5097 3.8104 35 1 5.4610 -9.2624 2.3669 36 1 9.1824 -7.3163 0.8080 37 1 10.2176 -7.6619 2.0854 38 1 6.4585 -8.3246 -0.0033 39 1 7.7129 -7.0724 0.1741 40 1 5.4602 -6.1308 -0.4475 41 1 6.0756 -5.5034 1.1009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393355475.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:56 Heat of formation + Delta-G solvation = -81.862624 kcal Electronic energy + Delta-G solvation = -20890.128448 eV Core-core repulsion = 17611.711638 eV Total energy + Delta-G solvation = -3278.416810 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.55549 -38.29476 -36.87022 -35.11639 -34.01704 -32.76087 -31.36746 -31.12751 -28.22815 -26.66327 -24.24568 -23.54746 -22.38467 -21.44933 -21.26996 -19.75196 -18.66271 -17.16130 -16.46123 -15.85625 -15.73534 -15.50314 -15.33614 -14.76553 -14.64132 -14.37665 -14.17140 -13.87106 -13.81768 -13.12605 -12.93881 -12.66097 -12.14756 -12.06692 -11.58855 -11.50178 -11.28925 -11.04788 -10.86259 -10.81745 -10.72109 -10.43840 -10.38147 -10.02194 -9.94846 -9.13332 -8.89087 -8.83744 -8.22976 -8.19598 -6.13028 -4.15043 2.55264 2.96771 3.28258 3.33570 3.38522 3.83135 4.20183 4.32717 4.47338 4.67744 4.76963 4.91374 4.99383 5.06949 5.23523 5.25456 5.29615 5.44961 5.47644 5.54588 5.66736 5.70821 5.80850 5.95147 6.03041 6.17122 6.17697 6.24928 6.33802 6.54342 6.66109 7.08805 7.19272 7.41604 7.58586 7.60525 7.76384 8.12929 8.37559 8.54879 8.97792 9.49945 10.98481 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.023584 B = 0.003262 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.976250 B = 8582.903345 C = 9283.510857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.515 4.515 8 H 0.065 0.935 9 C 0.198 3.802 10 O -0.400 6.400 11 C 0.061 3.939 12 C 0.066 3.934 13 N -0.682 5.682 14 C 0.089 3.911 15 C -0.123 4.123 16 C 0.129 3.871 17 N -0.627 5.627 18 C 0.709 3.291 19 N -0.870 5.870 20 O -0.596 6.596 21 C 0.117 3.883 22 C -0.168 4.168 23 H 0.264 0.736 24 H 0.004 0.996 25 H 0.006 0.994 26 H 0.040 0.960 27 H 0.046 0.954 28 H 0.034 0.966 29 H 0.074 0.926 30 H 0.357 0.643 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.065 0.935 36 H 0.396 0.604 37 H 0.412 0.588 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.102 -17.726 -0.604 22.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.554 4.554 8 H 0.083 0.917 9 C 0.123 3.877 10 O -0.320 6.320 11 C -0.017 4.017 12 C -0.063 4.063 13 N -0.313 5.313 14 C -0.021 4.021 15 C -0.162 4.162 16 C 0.005 3.995 17 N -0.365 5.365 18 C 0.409 3.591 19 N -0.440 5.440 20 O -0.474 6.474 21 C -0.007 4.007 22 C -0.208 4.208 23 H 0.074 0.926 24 H 0.021 0.979 25 H 0.024 0.976 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.093 0.907 30 H 0.177 0.823 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.113 0.887 35 H 0.083 0.917 36 H 0.226 0.774 37 H 0.244 0.756 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.593 -18.137 0.541 22.087 hybrid contribution 0.933 1.489 -1.165 2.109 sum 13.525 -16.648 -0.624 21.459 Atomic orbital electron populations 1.69962 1.06110 1.27180 1.50453 1.24948 0.94973 0.99437 0.95136 0.86344 0.79678 0.82317 0.78188 1.20501 1.21037 1.19648 1.21042 0.93964 0.89421 1.50931 0.91666 1.20170 0.88684 0.83426 0.95379 1.87776 1.35815 1.13145 1.95237 1.22303 0.94570 0.85286 0.99538 1.21983 0.95701 0.97991 0.90615 1.60573 1.26410 1.09146 1.35217 1.21532 0.89341 0.95639 0.95602 1.21928 0.98442 0.99139 0.96689 1.21544 0.84511 0.96417 0.97004 1.47308 1.05976 1.69479 1.13771 1.15858 0.80831 0.77764 0.84634 1.43177 1.08481 1.75860 1.16475 1.90950 1.84619 1.57189 1.14677 1.21585 0.99075 0.97606 0.82451 1.22712 0.96792 0.98888 1.02359 0.92627 0.97851 0.97617 0.94193 0.93549 0.94796 0.90744 0.82309 0.90641 0.89754 0.91297 0.88686 0.91656 0.77367 0.75576 0.91191 0.90650 0.90401 0.90887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.52 -15.02 9.43 -34.44 -0.32 -15.35 16 8 H 0.07 1.88 7.81 -52.48 -0.41 1.47 16 9 C 0.20 5.37 5.69 36.00 0.20 5.57 16 10 O -0.40 -9.29 9.85 -35.23 -0.35 -9.63 16 11 C 0.06 1.10 6.28 37.16 0.23 1.33 16 12 C 0.07 0.92 5.90 -3.82 -0.02 0.90 16 13 N -0.68 -9.33 6.25 -106.67 -0.67 -10.00 16 14 C 0.09 0.93 2.43 -67.67 -0.16 0.77 16 15 C -0.12 -1.27 5.69 -26.61 -0.15 -1.42 16 16 C 0.13 1.25 6.44 -3.71 -0.02 1.23 16 17 N -0.63 -6.11 2.98 -178.47 -0.53 -6.64 16 18 C 0.71 8.16 8.57 -86.91 -0.74 7.41 16 19 N -0.87 -6.35 8.78 27.63 0.24 -6.11 16 20 O -0.60 -9.40 16.60 5.30 0.09 -9.32 16 21 C 0.12 0.86 6.38 -3.69 -0.02 0.84 16 22 C -0.17 -1.57 5.33 -26.61 -0.14 -1.72 16 23 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 24 H 0.00 0.10 8.14 -51.92 -0.42 -0.32 16 25 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.03 0.47 7.41 -51.93 -0.38 0.08 16 29 H 0.07 0.87 8.05 -51.93 -0.42 0.46 16 30 H 0.36 5.62 8.04 -39.29 -0.32 5.31 16 31 H 0.08 0.72 7.80 -51.93 -0.40 0.32 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.09 1.06 6.99 -51.93 -0.36 0.70 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.40 1.88 6.33 -40.82 -0.26 1.62 16 37 H 0.41 2.51 8.93 -40.82 -0.36 2.15 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.41 5.66 -51.93 -0.29 0.11 16 40 H 0.08 0.74 7.42 -51.93 -0.39 0.35 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 332.24 15.07 5.01 5.01 Total: -1.00 -34.03 332.24 -8.29 -42.32 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -6.54 Total: 2.68 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -1.26 Total: 1.09 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: -0.22 Total: -48.82 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -0.26 Total: -18.95 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.03 -8.29 -42.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393355475.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.540 kcal (2) G-P(sol) polarization free energy of solvation -34.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds