Wall clock time and date at job start Mon Mar 30 2020 05:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00297 * 2 1 4 4 H 1.48499 * 109.47561 * 270.00518 * 3 2 1 5 5 H 1.48506 * 109.46752 * 30.00320 * 3 2 1 6 6 H 1.48499 * 109.47055 * 150.00435 * 3 2 1 7 7 C 1.37873 * 119.99881 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00504 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00170 * 359.97438 * 7 2 1 10 10 O 1.42894 * 109.47448 * 180.02562 * 9 7 2 11 11 C 1.42901 * 114.00045 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47048 * 180.02562 * 11 10 9 13 13 N 1.46905 * 109.46975 * 64.99845 * 12 11 10 14 14 C 1.46905 * 110.99730 * 179.97438 * 13 12 11 15 15 C 1.53039 * 109.46064 * 204.99869 * 14 13 12 16 16 C 1.53194 * 109.31509 * 178.62967 * 15 14 13 17 17 N 1.46931 * 108.88917 * 54.56285 * 16 15 14 18 18 C 1.34777 * 120.62244 * 126.46537 * 17 16 15 19 19 N 1.34780 * 119.99432 * 174.77175 * 18 17 16 20 20 O 1.21578 * 120.00517 * 354.76364 * 18 17 16 21 21 C 1.46957 * 118.71860 * 306.64211 * 17 16 15 22 22 C 1.53045 * 109.44743 * 84.94022 * 14 13 12 23 23 H 0.97005 * 119.99967 * 359.97438 * 1 2 3 24 24 H 1.09010 * 109.47307 * 59.99922 * 9 7 2 25 25 H 1.09001 * 109.47510 * 300.00397 * 9 7 2 26 26 H 1.08998 * 109.47731 * 60.00119 * 11 10 9 27 27 H 1.09003 * 109.47310 * 299.99478 * 11 10 9 28 28 H 1.09000 * 109.47270 * 304.99847 * 12 11 10 29 29 H 1.09006 * 109.46947 * 184.99819 * 12 11 10 30 30 H 1.00895 * 110.99950 * 303.95283 * 13 12 11 31 31 H 1.09001 * 109.46130 * 324.97415 * 14 13 12 32 32 H 1.09003 * 109.49423 * 58.67311 * 15 14 13 33 33 H 1.09001 * 109.52532 * 298.59819 * 15 14 13 34 34 H 1.08996 * 109.58537 * 174.42051 * 16 15 14 35 35 H 1.09001 * 109.58540 * 294.70814 * 16 15 14 36 36 H 0.97003 * 119.99848 * 4.96458 * 19 18 17 37 37 H 0.96996 * 119.99963 * 184.96650 * 19 18 17 38 38 H 1.09001 * 109.46823 * 293.57716 * 21 17 16 39 39 H 1.08999 * 109.71188 * 173.28995 * 21 17 16 40 40 H 1.08998 * 109.49447 * 301.33072 * 22 14 13 41 41 H 1.09000 * 109.49736 * 61.42087 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 2.1795 -3.5853 -0.0005 11 6 1.5649 -4.8754 -0.0011 12 6 2.6479 -5.9562 -0.0004 13 7 3.4070 -5.8879 1.2554 14 6 4.4577 -6.9140 1.2919 15 6 4.7965 -7.2454 2.7470 16 6 5.8678 -8.3399 2.7812 17 7 7.0185 -7.9045 1.9779 18 6 8.2595 -7.8973 2.5037 19 7 9.3188 -7.5971 1.7264 20 8 8.4233 -8.1615 3.6791 21 6 6.7894 -7.4734 0.5918 22 6 5.7078 -6.3886 0.5822 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8896 26 1 0.9450 -4.9822 -0.8913 27 1 0.9445 -4.9827 0.8887 28 1 3.3220 -5.7956 -0.8417 29 1 2.1818 -6.9375 -0.0904 30 1 3.7955 -4.9670 1.3934 31 1 4.1046 -7.8134 0.7873 32 1 3.9003 -7.5972 3.2581 33 1 5.1728 -6.3523 3.2459 34 1 6.1839 -8.5097 3.8104 35 1 5.4610 -9.2624 2.3669 36 1 9.1824 -7.3163 0.8080 37 1 10.2176 -7.6619 2.0854 38 1 6.4585 -8.3246 -0.0033 39 1 7.7129 -7.0724 0.1741 40 1 5.4602 -6.1308 -0.4475 41 1 6.0756 -5.5034 1.1009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393355475.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:55 Heat of formation + Delta-G solvation = -109.250983 kcal Electronic energy + Delta-G solvation = -20891.316096 eV Core-core repulsion = 17611.711638 eV Total energy + Delta-G solvation = -3279.604458 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.37320 -39.33219 -38.44152 -36.23824 -34.98745 -34.71212 -32.44939 -31.87801 -29.83228 -28.37014 -25.17845 -24.50839 -24.30115 -22.70967 -22.12445 -20.55228 -19.41294 -18.62988 -17.92361 -17.46679 -16.97291 -16.50408 -16.39096 -16.37126 -15.68910 -15.55630 -15.37211 -15.07504 -14.77060 -14.53462 -14.00951 -13.64979 -13.55969 -13.22895 -13.12044 -12.79672 -12.70147 -12.51841 -12.31309 -12.25138 -11.96066 -11.78959 -11.42501 -11.31215 -11.27474 -10.86970 -10.72970 -10.22561 -9.63818 -9.25649 -8.32638 -6.45081 1.39732 1.42449 1.54391 1.82035 2.10734 2.34071 3.01452 3.16240 3.22331 3.25469 3.76250 3.90284 4.04203 4.18587 4.27587 4.35067 4.38683 4.48974 4.54281 4.62986 4.72992 4.78209 4.82524 4.90042 4.93291 4.95877 5.04447 5.18044 5.18484 5.31349 5.52035 5.54310 5.85904 5.95575 6.00647 6.19122 6.41215 6.53523 6.81754 6.88984 7.27060 7.59703 8.79748 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.023584 B = 0.003262 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.976250 B = 8582.903345 C = 9283.510857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.983 3.017 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.063 0.937 9 C 0.212 3.788 10 O -0.408 6.408 11 C 0.051 3.949 12 C 0.078 3.922 13 N -0.695 5.695 14 C 0.091 3.909 15 C -0.115 4.115 16 C 0.131 3.869 17 N -0.627 5.627 18 C 0.700 3.300 19 N -0.851 5.851 20 O -0.646 6.646 21 C 0.118 3.882 22 C -0.162 4.162 23 H 0.271 0.729 24 H -0.015 1.015 25 H -0.018 1.018 26 H 0.048 0.952 27 H 0.039 0.961 28 H 0.040 0.960 29 H 0.106 0.894 30 H 0.341 0.659 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.410 0.590 37 H 0.419 0.581 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.082 0.918 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.335 -18.203 -1.968 23.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.193 4.193 3 Si 0.806 3.194 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.585 4.585 8 H 0.081 0.919 9 C 0.137 3.863 10 O -0.328 6.328 11 C -0.026 4.026 12 C -0.051 4.051 13 N -0.325 5.325 14 C -0.018 4.018 15 C -0.154 4.154 16 C 0.008 3.992 17 N -0.364 5.364 18 C 0.400 3.600 19 N -0.422 5.422 20 O -0.529 6.529 21 C -0.005 4.005 22 C -0.202 4.202 23 H 0.079 0.921 24 H 0.003 0.997 25 H 0.000 1.000 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.124 0.876 30 H 0.159 0.841 31 H 0.114 0.886 32 H 0.104 0.896 33 H 0.062 0.938 34 H 0.094 0.906 35 H 0.107 0.893 36 H 0.244 0.756 37 H 0.252 0.748 38 H 0.112 0.888 39 H 0.116 0.884 40 H 0.101 0.899 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.836 -18.640 -0.878 23.230 hybrid contribution 0.500 1.563 -0.747 1.803 sum 14.336 -17.077 -1.625 22.356 Atomic orbital electron populations 1.70072 1.07806 1.28643 1.50541 1.25967 0.95944 1.03436 0.93963 0.85185 0.78346 0.77046 0.78847 1.19173 1.20085 1.18885 1.21390 0.94110 0.90827 1.52143 0.91892 1.19769 0.88567 0.84688 0.93287 1.87741 1.35449 1.14367 1.95199 1.22650 0.96371 0.83981 0.99578 1.21942 0.94699 0.97547 0.90944 1.60585 1.27778 1.08936 1.35189 1.21601 0.89097 0.95345 0.95787 1.21837 0.98623 0.98350 0.96625 1.21502 0.84287 0.96980 0.96451 1.47372 1.05420 1.68981 1.14646 1.16134 0.81876 0.77720 0.84301 1.42992 1.07897 1.74527 1.16785 1.90914 1.85454 1.59505 1.17009 1.21760 0.99569 0.97824 0.81315 1.22625 0.96853 0.98753 1.01994 0.92059 0.99704 0.99997 0.93389 0.94256 0.94220 0.87592 0.84079 0.88599 0.89646 0.93767 0.90634 0.89264 0.75634 0.74790 0.88767 0.88383 0.89926 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.09 13.29 21.45 0.28 -55.80 16 2 C 0.01 0.31 5.46 84.65 0.46 0.77 16 3 Si 0.98 44.14 29.54 68.60 2.03 46.17 16 4 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 7 C -0.55 -32.38 9.43 25.60 0.24 -32.14 16 8 H 0.06 3.66 7.81 -2.91 -0.02 3.63 16 9 C 0.21 11.87 5.69 71.24 0.41 12.28 16 10 O -0.41 -19.25 9.85 -148.98 -1.47 -20.72 16 11 C 0.05 1.84 6.28 71.98 0.45 2.29 16 12 C 0.08 2.02 5.90 86.30 0.51 2.53 16 13 N -0.69 -18.37 6.25 -491.38 -3.07 -21.44 16 14 C 0.09 1.74 2.43 44.94 0.11 1.85 16 15 C -0.12 -2.31 5.69 30.67 0.17 -2.13 16 16 C 0.13 2.41 6.44 86.36 0.56 2.97 16 17 N -0.63 -11.18 2.98 -836.82 -2.49 -13.67 16 18 C 0.70 15.42 8.57 179.05 1.53 16.96 16 19 N -0.85 -10.85 8.78 -184.75 -1.62 -12.48 16 20 O -0.65 -20.61 16.60 -3.96 -0.07 -20.68 16 21 C 0.12 1.39 6.38 86.36 0.55 1.94 16 22 C -0.16 -2.73 5.33 30.67 0.16 -2.57 16 23 H 0.27 15.09 8.31 -92.70 -0.77 14.32 16 24 H -0.01 -0.86 8.14 -2.38 -0.02 -0.88 16 25 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 26 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.04 1.45 8.14 -2.39 -0.02 1.44 16 28 H 0.04 1.00 7.41 -2.39 -0.02 0.98 16 29 H 0.11 2.13 8.05 -2.38 -0.02 2.11 16 30 H 0.34 10.83 8.04 -89.70 -0.72 10.11 16 31 H 0.10 1.49 7.80 -2.39 -0.02 1.47 16 32 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.08 1.72 6.99 -2.39 -0.02 1.70 16 35 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.41 2.75 6.33 -92.71 -0.59 2.16 16 37 H 0.42 4.46 8.93 -92.71 -0.83 3.63 16 38 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.10 0.71 5.66 -2.39 -0.01 0.69 16 40 H 0.08 1.35 7.42 -2.39 -0.02 1.33 16 41 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -75.21 332.24 -2.34 -77.55 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -1.09 Total: 16.32 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: 5.16 Total: 4.74 kcal Atomic # 7 Polarization: -96.48 SS G_CDS: -6.90 Total: -103.39 kcal Atomic # 8 Polarization: -39.86 SS G_CDS: -1.53 Total: -41.39 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -75.21 -2.34 -77.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393355475.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.702 kcal (2) G-P(sol) polarization free energy of solvation -75.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds