Wall clock time and date at job start Mon Mar 30 2020 04:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46901 * 111.00227 * 2 1 4 4 C 1.53002 * 109.46897 * 293.95439 * 3 2 1 5 5 C 1.53005 * 109.46665 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.46769 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.46856 * 179.97438 * 6 5 4 8 8 H 1.07995 * 120.00446 * 359.97438 * 7 6 5 9 9 C 1.37884 * 119.99953 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99816 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00090 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46897 * 90.00242 * 11 9 7 13 13 H 1.48499 * 109.47096 * 210.00103 * 11 9 7 14 14 H 1.48500 * 109.47246 * 330.00369 * 11 9 7 15 15 C 1.46899 * 111.00299 * 123.95672 * 2 1 3 16 16 C 1.50696 * 110.46156 * 177.15771 * 15 2 1 17 17 O 1.20829 * 120.00437 * 143.09444 * 16 15 2 18 18 O 1.34234 * 120.00104 * 323.09478 * 16 15 2 19 19 C 1.54507 * 110.51084 * 54.55053 * 15 2 1 20 20 C 1.54484 * 104.06639 * 241.35760 * 19 15 2 21 21 O 1.44426 * 104.80181 * 336.02442 * 20 19 15 22 22 C 1.44429 * 105.27486 * 40.50523 * 21 20 19 23 23 H 1.09006 * 109.46874 * 302.10600 * 1 2 3 24 24 H 1.09003 * 109.47242 * 62.10620 * 1 2 3 25 25 H 1.09003 * 109.47206 * 182.10786 * 1 2 3 26 26 H 1.08994 * 109.47183 * 53.95810 * 3 2 1 27 27 H 1.09008 * 109.47124 * 173.95531 * 3 2 1 28 28 H 1.08994 * 109.47021 * 299.99576 * 4 3 2 29 29 H 1.08995 * 109.46917 * 60.00260 * 4 3 2 30 30 H 1.09003 * 109.46735 * 299.99601 * 5 4 3 31 31 H 1.08991 * 109.47304 * 59.99895 * 5 4 3 32 32 H 1.09007 * 109.46717 * 299.99585 * 6 5 4 33 33 H 1.08998 * 109.47684 * 59.99194 * 6 5 4 34 34 H 0.97004 * 120.00488 * 179.97438 * 10 9 7 35 35 H 0.96689 * 117.00142 * 179.97438 * 18 16 15 36 36 H 1.09004 * 110.51415 * 122.71620 * 19 15 2 37 37 H 1.09004 * 110.62958 * 0.06100 * 19 15 2 38 38 H 1.08998 * 110.36969 * 94.84705 * 20 19 15 39 39 H 1.08997 * 110.37614 * 217.19489 * 20 19 15 40 40 H 1.09003 * 110.37274 * 200.65368 * 22 21 20 41 41 H 1.08998 * 110.36717 * 78.32225 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 -1.3183 5 6 2.1804 3.4856 -1.3185 6 6 1.8158 4.1718 -2.6365 7 6 2.3560 5.5786 -2.6365 8 1 2.9040 5.9467 -1.7818 9 6 2.1504 6.3960 -3.7277 10 7 1.4827 5.9480 -4.7683 11 14 2.8193 8.1402 -3.7274 12 1 4.1914 8.1442 -4.2956 13 1 1.9398 9.0078 -4.5514 14 1 2.8586 8.6551 -2.3351 15 6 1.9955 -0.7660 1.1375 16 6 3.5007 -0.8165 1.0871 17 8 4.1416 -0.7652 2.1102 18 8 4.1297 -0.9184 -0.0944 19 6 1.4059 -2.1942 1.1478 20 6 0.6399 -2.2746 2.4869 21 8 1.2688 -1.2862 3.3316 22 6 1.5159 -0.1524 2.4716 23 1 -0.3633 0.5462 0.8706 24 1 -0.3634 0.4808 -0.9083 25 1 -0.3634 -1.0270 0.0378 26 1 1.5612 1.9273 0.8309 27 1 3.0798 1.3443 0.1082 28 1 2.0658 1.5015 -2.1491 29 1 0.5472 2.0845 -1.4264 30 1 1.7463 4.0417 -0.4875 31 1 3.2646 3.4581 -1.2105 32 1 2.2495 3.6157 -3.4677 33 1 0.7315 4.1992 -2.7442 34 1 1.3377 6.5231 -5.5359 35 1 5.0960 -0.9469 -0.0762 36 1 2.2033 -2.9368 1.1188 37 1 0.7242 -2.3343 0.3088 38 1 -0.4121 -2.0317 2.3374 39 1 0.7427 -3.2678 2.9239 40 1 2.2915 0.4845 2.8969 41 1 0.5982 0.4157 2.3198 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395388077.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:49 Heat of formation + Delta-G solvation = -134.603337 kcal Electronic energy + Delta-G solvation = -21654.273488 eV Core-core repulsion = 18341.276918 eV Total energy + Delta-G solvation = -3312.996570 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.43258 -39.25783 -37.23863 -36.18357 -34.49511 -32.55262 -31.25759 -29.53519 -28.58765 -26.36641 -24.85850 -23.63686 -22.84341 -21.30178 -20.06282 -19.87994 -18.26312 -17.40167 -16.95773 -16.25782 -16.06394 -15.86114 -15.07962 -14.98846 -14.63698 -14.38112 -14.02643 -13.68231 -13.48162 -12.81405 -12.55433 -12.31406 -12.21213 -11.93048 -11.80685 -11.74243 -11.63199 -11.45227 -11.28259 -10.98497 -10.68081 -10.55954 -10.49150 -10.41381 -10.19503 -9.64164 -9.28750 -9.02543 -8.52755 -8.33236 -5.98491 -4.00665 1.93167 2.73379 3.26598 3.32507 3.38681 3.42173 3.83387 4.09926 4.21602 4.47220 4.62055 4.68255 4.81291 4.95609 5.10506 5.26148 5.27566 5.31243 5.37115 5.37448 5.42169 5.44384 5.56863 5.74941 5.84733 6.05827 6.11349 6.28300 6.33656 6.45062 6.71355 6.75612 6.85181 6.94874 7.17369 7.69961 7.75413 7.85294 8.02277 8.45178 9.06734 9.63284 11.12808 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.032283 B = 0.003481 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.114895 B = 8042.194648 C = 8286.047809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 N -0.512 5.512 3 C 0.050 3.950 4 C -0.110 4.110 5 C -0.110 4.110 6 C 0.022 3.978 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.056 3.944 10 N -0.896 5.896 11 Si 0.891 3.109 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.274 1.274 15 C 0.087 3.913 16 C 0.501 3.499 17 O -0.509 6.509 18 O -0.493 6.493 19 C -0.142 4.142 20 C 0.041 3.959 21 O -0.361 6.361 22 C 0.028 3.972 23 H 0.033 0.967 24 H 0.087 0.913 25 H 0.072 0.928 26 H 0.037 0.963 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.016 0.984 33 H 0.015 0.985 34 H 0.260 0.740 35 H 0.408 0.592 36 H 0.084 0.916 37 H 0.107 0.893 38 H 0.066 0.934 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.720 -18.065 11.843 21.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.238 5.238 3 C -0.077 4.077 4 C -0.148 4.148 5 C -0.148 4.148 6 C -0.015 4.015 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.145 4.145 10 N -0.535 5.535 11 Si 0.719 3.281 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.199 1.199 15 C -0.005 4.005 16 C 0.342 3.658 17 O -0.396 6.396 18 O -0.303 6.303 19 C -0.180 4.180 20 C -0.036 4.036 21 O -0.278 6.278 22 C -0.050 4.050 23 H 0.051 0.949 24 H 0.106 0.894 25 H 0.091 0.909 26 H 0.055 0.945 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.034 0.966 33 H 0.033 0.967 34 H 0.070 0.930 35 H 0.266 0.734 36 H 0.102 0.898 37 H 0.125 0.875 38 H 0.084 0.916 39 H 0.116 0.884 40 H 0.122 0.878 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.821 -18.242 11.748 21.773 hybrid contribution 0.733 1.415 0.362 1.634 sum -1.087 -16.827 12.110 20.760 Atomic orbital electron populations 1.22669 0.86417 1.02267 1.02364 1.62302 1.08608 1.15128 1.37726 1.22408 0.99769 0.86095 0.99448 1.21643 1.00984 0.96897 0.95238 1.21612 0.99402 0.92776 1.01016 1.19077 0.96705 0.94648 0.91048 1.21284 1.34795 0.98023 1.01799 0.92795 1.25026 0.95331 0.98465 0.95657 1.69963 1.40979 1.36488 1.06099 0.86616 0.78848 0.84693 0.77974 1.20674 1.21236 1.19915 1.22283 0.88502 0.97268 0.92435 1.22714 0.90601 0.71557 0.80945 1.90758 1.67438 1.45794 1.35615 1.84665 1.27215 1.84290 1.34091 1.23091 1.01351 0.93540 0.99979 1.23530 0.96535 0.94033 0.89531 1.89202 1.80325 1.25805 1.32496 1.24069 1.01656 0.90443 0.88876 0.94858 0.89398 0.90922 0.94469 0.91142 0.91269 0.92276 0.93656 0.93470 0.96558 0.96703 0.93041 0.73424 0.89775 0.87503 0.91590 0.88393 0.87811 0.90201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 8.58 60.06 0.52 0.61 16 2 N -0.51 -6.03 4.44 -226.68 -1.01 -7.03 16 3 C 0.05 0.68 4.35 -3.82 -0.02 0.67 16 4 C -0.11 -1.80 5.14 -26.73 -0.14 -1.94 16 5 C -0.11 -2.23 5.15 -26.73 -0.14 -2.37 16 6 C 0.02 0.57 4.97 -27.88 -0.14 0.44 16 7 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 10 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 11 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 14 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 15 C 0.09 0.98 0.69 -131.19 -0.09 0.88 16 16 C 0.50 6.30 5.57 36.00 0.20 6.50 16 17 O -0.51 -7.64 16.60 -18.75 -0.31 -7.95 16 18 O -0.49 -5.39 12.76 -39.27 -0.50 -5.89 16 19 C -0.14 -1.23 5.79 -25.16 -0.15 -1.38 16 20 C 0.04 0.33 7.63 37.94 0.29 0.62 16 21 O -0.36 -4.32 11.65 -35.23 -0.41 -4.73 16 22 C 0.03 0.32 5.34 37.93 0.20 0.53 16 23 H 0.03 0.31 6.21 -51.93 -0.32 -0.01 16 24 H 0.09 0.92 6.57 -51.93 -0.34 0.57 16 25 H 0.07 0.56 5.86 -51.93 -0.30 0.25 16 26 H 0.04 0.49 7.49 -51.93 -0.39 0.11 16 27 H 0.07 1.01 6.49 -51.92 -0.34 0.68 16 28 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.06 0.94 6.60 -51.93 -0.34 0.60 16 30 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.41 2.71 9.10 45.56 0.41 3.13 16 36 H 0.08 0.71 7.73 -51.93 -0.40 0.31 16 37 H 0.11 0.79 6.11 -51.93 -0.32 0.47 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.10 1.31 7.32 -51.93 -0.38 0.93 16 41 H 0.08 0.82 5.73 -51.93 -0.30 0.53 16 LS Contribution 325.65 15.07 4.91 4.91 Total: -1.00 -33.66 325.65 -7.00 -40.66 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -5.52 Total: -1.32 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: 0.13 Total: -9.07 kcal Atomic # 7 Polarization: -33.07 SS G_CDS: -0.27 Total: -33.34 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -1.22 Total: -18.57 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.66 -7.00 -40.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395388077.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.948 kcal (2) G-P(sol) polarization free energy of solvation -33.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds