Wall clock time and date at job start Mon Mar 30 2020 04:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46901 * 111.00227 * 2 1 4 4 C 1.53002 * 109.46897 * 293.95439 * 3 2 1 5 5 C 1.53005 * 109.46665 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.46769 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.46856 * 179.97438 * 6 5 4 8 8 H 1.07995 * 120.00446 * 359.97438 * 7 6 5 9 9 C 1.37884 * 119.99953 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99816 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00090 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46897 * 90.00242 * 11 9 7 13 13 H 1.48499 * 109.47096 * 210.00103 * 11 9 7 14 14 H 1.48500 * 109.47246 * 330.00369 * 11 9 7 15 15 C 1.46899 * 111.00299 * 123.95672 * 2 1 3 16 16 C 1.50696 * 110.46156 * 177.15771 * 15 2 1 17 17 O 1.20829 * 120.00437 * 143.09444 * 16 15 2 18 18 O 1.34234 * 120.00104 * 323.09478 * 16 15 2 19 19 C 1.54507 * 110.51084 * 54.55053 * 15 2 1 20 20 C 1.54484 * 104.06639 * 241.35760 * 19 15 2 21 21 O 1.44426 * 104.80181 * 336.02442 * 20 19 15 22 22 C 1.44429 * 105.27486 * 40.50523 * 21 20 19 23 23 H 1.09006 * 109.46874 * 302.10600 * 1 2 3 24 24 H 1.09003 * 109.47242 * 62.10620 * 1 2 3 25 25 H 1.09003 * 109.47206 * 182.10786 * 1 2 3 26 26 H 1.08994 * 109.47183 * 53.95810 * 3 2 1 27 27 H 1.09008 * 109.47124 * 173.95531 * 3 2 1 28 28 H 1.08994 * 109.47021 * 299.99576 * 4 3 2 29 29 H 1.08995 * 109.46917 * 60.00260 * 4 3 2 30 30 H 1.09003 * 109.46735 * 299.99601 * 5 4 3 31 31 H 1.08991 * 109.47304 * 59.99895 * 5 4 3 32 32 H 1.09007 * 109.46717 * 299.99585 * 6 5 4 33 33 H 1.08998 * 109.47684 * 59.99194 * 6 5 4 34 34 H 0.97004 * 120.00488 * 179.97438 * 10 9 7 35 35 H 0.96689 * 117.00142 * 179.97438 * 18 16 15 36 36 H 1.09004 * 110.51415 * 122.71620 * 19 15 2 37 37 H 1.09004 * 110.62958 * 0.06100 * 19 15 2 38 38 H 1.08998 * 110.36969 * 94.84705 * 20 19 15 39 39 H 1.08997 * 110.37614 * 217.19489 * 20 19 15 40 40 H 1.09003 * 110.37274 * 200.65368 * 22 21 20 41 41 H 1.08998 * 110.36717 * 78.32225 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 -1.3183 5 6 2.1804 3.4856 -1.3185 6 6 1.8158 4.1718 -2.6365 7 6 2.3560 5.5786 -2.6365 8 1 2.9040 5.9467 -1.7818 9 6 2.1504 6.3960 -3.7277 10 7 1.4827 5.9480 -4.7683 11 14 2.8193 8.1402 -3.7274 12 1 4.1914 8.1442 -4.2956 13 1 1.9398 9.0078 -4.5514 14 1 2.8586 8.6551 -2.3351 15 6 1.9955 -0.7660 1.1375 16 6 3.5007 -0.8165 1.0871 17 8 4.1416 -0.7652 2.1102 18 8 4.1297 -0.9184 -0.0944 19 6 1.4059 -2.1942 1.1478 20 6 0.6399 -2.2746 2.4869 21 8 1.2688 -1.2862 3.3316 22 6 1.5159 -0.1524 2.4716 23 1 -0.3633 0.5462 0.8706 24 1 -0.3634 0.4808 -0.9083 25 1 -0.3634 -1.0270 0.0378 26 1 1.5612 1.9273 0.8309 27 1 3.0798 1.3443 0.1082 28 1 2.0658 1.5015 -2.1491 29 1 0.5472 2.0845 -1.4264 30 1 1.7463 4.0417 -0.4875 31 1 3.2646 3.4581 -1.2105 32 1 2.2495 3.6157 -3.4677 33 1 0.7315 4.1992 -2.7442 34 1 1.3377 6.5231 -5.5359 35 1 5.0960 -0.9469 -0.0762 36 1 2.2033 -2.9368 1.1188 37 1 0.7242 -2.3343 0.3088 38 1 -0.4121 -2.0317 2.3374 39 1 0.7427 -3.2678 2.9239 40 1 2.2915 0.4845 2.8969 41 1 0.5982 0.4157 2.3198 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395388077.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:48 Heat of formation + Delta-G solvation = -159.327698 kcal Electronic energy + Delta-G solvation = -21655.345617 eV Core-core repulsion = 18341.276918 eV Total energy + Delta-G solvation = -3314.068699 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.32009 -40.15362 -38.25129 -37.13509 -36.17318 -34.33610 -32.37669 -30.41814 -29.99810 -27.58419 -26.16284 -24.92445 -23.63178 -22.72788 -21.63720 -20.77418 -19.21323 -18.43202 -18.30446 -17.77494 -16.95090 -16.77403 -16.53229 -16.23422 -15.90586 -15.52401 -15.04974 -14.68088 -14.47629 -14.37551 -13.78604 -13.62829 -13.48032 -13.19472 -12.97065 -12.84394 -12.67559 -12.57926 -12.50827 -12.23213 -12.22486 -12.08997 -12.01547 -11.61646 -11.33969 -11.27780 -11.01348 -10.94565 -10.54299 -9.43601 -8.19247 -6.30201 0.98027 1.40003 1.41119 1.52247 1.90803 2.38315 2.43170 3.03576 3.13650 3.31563 3.40551 3.87990 3.98684 4.02910 4.06088 4.13648 4.24953 4.44420 4.48264 4.52178 4.55107 4.61786 4.72631 4.75221 4.82357 4.86568 4.88365 5.13191 5.21443 5.26881 5.36329 5.44742 5.55071 5.57957 5.78342 5.84114 5.87853 5.89496 6.27249 6.87220 6.91129 7.38955 8.92439 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.032283 B = 0.003481 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.114895 B = 8042.194648 C = 8286.047809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 N -0.515 5.515 3 C 0.059 3.941 4 C -0.097 4.097 5 C -0.099 4.099 6 C 0.025 3.975 7 C -0.546 4.546 8 H 0.057 0.943 9 C 0.000 4.000 10 N -0.932 5.932 11 Si 0.963 3.037 12 H -0.273 1.273 13 H -0.281 1.281 14 H -0.264 1.264 15 C 0.085 3.915 16 C 0.501 3.499 17 O -0.540 6.540 18 O -0.495 6.495 19 C -0.137 4.137 20 C 0.037 3.963 21 O -0.385 6.385 22 C 0.030 3.970 23 H 0.040 0.960 24 H 0.080 0.920 25 H 0.098 0.902 26 H 0.043 0.957 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.046 0.954 32 H -0.010 1.010 33 H -0.007 1.007 34 H 0.264 0.736 35 H 0.424 0.576 36 H 0.085 0.915 37 H 0.124 0.876 38 H 0.087 0.913 39 H 0.115 0.885 40 H 0.084 0.916 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.143 -18.499 12.502 22.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 N -0.241 5.241 3 C -0.068 4.068 4 C -0.135 4.135 5 C -0.137 4.137 6 C -0.012 4.012 7 C -0.584 4.584 8 H 0.076 0.924 9 C -0.198 4.198 10 N -0.573 5.573 11 Si 0.788 3.212 12 H -0.198 1.198 13 H -0.206 1.206 14 H -0.188 1.188 15 C -0.007 4.007 16 C 0.343 3.657 17 O -0.430 6.430 18 O -0.307 6.307 19 C -0.174 4.174 20 C -0.039 4.039 21 O -0.304 6.304 22 C -0.049 4.049 23 H 0.059 0.941 24 H 0.098 0.902 25 H 0.117 0.883 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.009 0.991 33 H 0.011 0.989 34 H 0.072 0.928 35 H 0.285 0.715 36 H 0.103 0.897 37 H 0.142 0.858 38 H 0.105 0.895 39 H 0.133 0.867 40 H 0.103 0.897 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.236 -18.693 12.403 22.545 hybrid contribution 0.866 1.498 0.116 1.735 sum -1.371 -17.195 12.518 21.313 Atomic orbital electron populations 1.22782 0.84943 1.04074 1.02296 1.62229 1.09923 1.13651 1.38259 1.22158 0.99462 0.87446 0.97756 1.21428 1.00962 0.94495 0.96601 1.21416 0.99524 0.94814 0.97916 1.18994 0.94918 0.94176 0.93120 1.21742 1.35044 0.99429 1.02136 0.92435 1.25970 0.95485 1.03175 0.95178 1.70090 1.42084 1.38286 1.06811 0.85479 0.78301 0.78992 0.78469 1.19821 1.20625 1.18838 1.22363 0.87695 0.98680 0.91940 1.23040 0.91292 0.70649 0.80721 1.90743 1.68232 1.47382 1.36622 1.84635 1.28868 1.83753 1.33397 1.23141 1.01674 0.91635 1.00987 1.23785 0.97271 0.94073 0.88741 1.89176 1.80942 1.26569 1.33672 1.24019 1.01598 0.90475 0.88783 0.94118 0.90160 0.88322 0.93847 0.91957 0.92245 0.91730 0.93175 0.93538 0.99124 0.98851 0.92767 0.71512 0.89674 0.85759 0.89474 0.86738 0.89736 0.88989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 8.58 127.69 1.10 1.19 16 2 N -0.52 -11.20 4.44 -871.09 -3.87 -15.08 16 3 C 0.06 1.56 4.35 86.30 0.38 1.94 16 4 C -0.10 -3.14 5.14 30.60 0.16 -2.98 16 5 C -0.10 -4.00 5.15 30.60 0.16 -3.85 16 6 C 0.03 1.33 4.97 29.85 0.15 1.47 16 7 C -0.55 -31.42 9.11 25.60 0.23 -31.19 16 8 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 9 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 10 N -0.93 -57.01 13.29 21.45 0.28 -56.73 16 11 Si 0.96 44.51 29.54 68.60 2.03 46.54 16 12 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 13 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 14 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 15 C 0.09 1.77 0.69 3.80 0.00 1.77 16 16 C 0.50 12.22 5.57 71.23 0.40 12.62 16 17 O -0.54 -16.18 16.60 21.95 0.36 -15.82 16 18 O -0.49 -10.35 12.76 -51.46 -0.66 -11.01 16 19 C -0.14 -2.02 5.79 31.61 0.18 -1.84 16 20 C 0.04 0.51 7.63 72.49 0.55 1.07 16 21 O -0.39 -8.65 11.65 -148.98 -1.74 -10.39 16 22 C 0.03 0.65 5.34 72.48 0.39 1.04 16 23 H 0.04 0.64 6.21 -2.38 -0.01 0.63 16 24 H 0.08 1.51 6.57 -2.39 -0.02 1.50 16 25 H 0.10 1.15 5.86 -2.39 -0.01 1.14 16 26 H 0.04 1.10 7.49 -2.39 -0.02 1.08 16 27 H 0.06 1.75 6.49 -2.38 -0.02 1.74 16 28 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.06 2.02 6.60 -2.39 -0.02 2.00 16 30 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 32 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 33 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 34 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 35 H 0.42 5.32 9.10 -74.06 -0.67 4.65 16 36 H 0.08 1.26 7.73 -2.38 -0.02 1.24 16 37 H 0.12 1.39 6.11 -2.39 -0.01 1.37 16 38 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.08 2.13 7.32 -2.39 -0.02 2.12 16 41 H 0.09 1.72 5.73 -2.39 -0.01 1.71 16 Total: -1.00 -72.64 325.65 0.92 -71.72 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 0.36 Total: 9.07 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: 4.15 Total: -18.31 kcal Atomic # 7 Polarization: -68.22 SS G_CDS: -3.59 Total: -71.81 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -2.03 Total: -37.21 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -72.64 0.92 -71.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395388077.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.612 kcal (2) G-P(sol) polarization free energy of solvation -72.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds