Wall clock time and date at job start Mon Mar 30 2020 05:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47098 * 2 1 4 4 C 1.52998 * 109.46852 * 180.02562 * 3 2 1 5 5 O 1.42904 * 109.46967 * 179.97438 * 4 3 2 6 6 C 1.42905 * 113.99898 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47047 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.46759 * 55.00215 * 7 6 5 9 9 O 1.42900 * 109.47412 * 295.00895 * 7 6 5 10 10 C 1.52992 * 109.47304 * 175.00356 * 7 6 5 11 11 N 1.46902 * 109.47425 * 185.00326 * 10 7 6 12 12 C 1.48528 * 110.99801 * 287.39715 * 11 10 7 13 13 C 1.54937 * 103.22430 * 200.27877 * 12 11 10 14 14 C 1.54592 * 102.92511 * 37.41391 * 13 12 11 15 15 H 1.09002 * 110.39425 * 96.99901 * 14 13 12 16 16 C 1.50695 * 110.31227 * 219.12886 * 14 13 12 17 17 H 1.07999 * 120.00538 * 115.71069 * 16 14 13 18 18 C 1.37881 * 119.99661 * 295.71417 * 16 14 13 19 19 N 1.31520 * 120.00186 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 120.00030 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.47297 * 89.99863 * 20 18 16 22 22 H 1.48503 * 109.47261 * 330.00044 * 20 18 16 23 23 H 1.48500 * 109.47454 * 210.00037 * 20 18 16 24 24 C 1.47903 * 110.99941 * 170.00158 * 11 10 7 25 25 H 1.08999 * 109.47374 * 59.99632 * 1 2 3 26 26 H 1.09000 * 109.47100 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46165 * 299.99672 * 1 2 3 28 28 H 1.09003 * 109.46165 * 240.00328 * 2 1 3 29 29 H 1.08999 * 109.47374 * 120.00368 * 2 1 3 30 30 H 1.08998 * 109.47472 * 60.00334 * 3 2 1 31 31 H 1.08999 * 109.47309 * 300.00408 * 3 2 1 32 32 H 1.08999 * 109.47391 * 60.00426 * 4 3 2 33 33 H 1.08999 * 109.47058 * 300.00024 * 4 3 2 34 34 H 1.09003 * 109.46859 * 60.00924 * 6 5 4 35 35 H 1.08995 * 109.47393 * 300.00593 * 6 5 4 36 36 H 0.96706 * 113.99469 * 299.99609 * 9 7 6 37 37 H 1.09000 * 109.47343 * 64.99742 * 10 7 6 38 38 H 1.09010 * 109.47128 * 305.00517 * 10 7 6 39 39 H 1.08999 * 110.67200 * 318.71089 * 12 11 10 40 40 H 1.08997 * 110.67160 * 81.67607 * 12 11 10 41 41 H 1.09003 * 110.72666 * 279.05141 * 13 12 11 42 42 H 1.09009 * 110.72428 * 155.77540 * 13 12 11 43 43 H 0.97001 * 119.99697 * 359.97438 * 19 18 16 44 44 H 1.08996 * 109.91819 * 26.48841 * 24 11 10 45 45 H 1.09008 * 109.91522 * 265.19754 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 8 4.0464 2.7897 -0.0012 6 6 5.4710 2.9025 -0.0013 7 6 5.8655 4.3807 -0.0026 8 1 5.3897 4.8845 0.8388 9 8 5.4381 4.9868 -1.2241 10 6 7.3854 4.5031 0.1230 11 7 7.7545 5.9200 0.2422 12 6 7.5902 6.6238 -1.0554 13 6 8.4851 7.8782 -0.8940 14 6 9.6949 7.3396 -0.0963 15 1 10.5159 7.0953 -0.7704 16 6 10.1416 8.3538 0.9248 17 1 10.0716 8.1265 1.9782 18 6 10.6397 9.5721 0.5141 19 7 10.7254 9.8489 -0.7688 20 14 11.1928 10.8297 1.7798 21 1 12.6315 10.6246 2.0854 22 1 10.3948 10.6663 3.0215 23 1 10.9919 12.1980 1.2388 24 6 9.1812 6.0675 0.6031 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8901 28 1 1.8932 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.9330 0.9288 -0.8909 33 1 3.9337 0.9284 0.8891 34 1 5.8737 2.4187 -0.8912 35 1 5.8738 2.4193 0.8888 36 1 5.8229 4.5881 -2.0166 37 1 7.8585 4.0776 -0.7620 38 1 7.7213 3.9643 1.0091 39 1 7.9439 6.0021 -1.8778 40 1 6.5493 6.9080 -1.2099 41 1 7.9654 8.6530 -0.3303 42 1 8.8012 8.2543 -1.8671 43 1 10.4385 9.1957 -1.4261 44 1 9.7434 5.2004 0.2566 45 1 9.2821 6.1713 1.6835 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397692985.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:16 Heat of formation + Delta-G solvation = -118.147973 kcal Electronic energy + Delta-G solvation = -21007.670525 eV Core-core repulsion = 17831.220608 eV Total energy + Delta-G solvation = -3176.449917 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.11294 -38.08001 -36.53306 -35.10760 -33.39853 -31.34180 -29.86028 -28.43557 -28.18994 -24.98874 -23.74339 -23.40373 -21.81294 -21.24207 -20.31296 -19.59884 -17.02154 -16.91065 -16.74996 -16.22565 -15.80841 -15.11106 -14.87336 -14.59966 -14.30095 -13.71266 -13.54765 -13.39938 -13.05306 -12.88328 -12.59809 -12.29676 -12.03348 -11.73607 -11.58739 -11.47456 -11.27582 -11.19152 -10.99608 -10.90716 -10.76561 -10.63588 -10.43553 -10.06676 -9.91583 -9.81853 -9.59606 -9.49514 -8.41053 -8.29742 -7.80795 -6.28141 -3.98986 3.29347 3.46806 3.51375 3.66893 4.38521 4.46581 4.55151 4.58313 4.68695 4.77107 4.91220 4.97474 5.01421 5.13059 5.18168 5.22711 5.27870 5.35767 5.44356 5.44973 5.46096 5.54138 5.67106 5.74097 5.75775 5.88079 5.95191 5.99499 6.07928 6.19992 6.21231 6.56657 6.72734 6.91255 6.99569 7.09048 7.28785 7.37227 7.67047 7.74336 7.82255 8.29530 8.49706 8.94607 9.71834 11.10145 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.052956 B = 0.002624 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.611549 B =10668.443941 C =10749.570603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.119 4.119 4 C 0.060 3.940 5 O -0.377 6.377 6 C 0.033 3.967 7 C 0.117 3.883 8 H 0.113 0.887 9 O -0.544 6.544 10 C 0.019 3.981 11 N -0.509 5.509 12 C 0.038 3.962 13 C -0.112 4.112 14 C 0.024 3.976 15 H 0.019 0.981 16 C -0.586 4.586 17 H 0.050 0.950 18 C 0.017 3.983 19 N -0.915 5.915 20 Si 1.070 2.930 21 H -0.290 1.290 22 H -0.289 1.289 23 H -0.285 1.285 24 C 0.051 3.949 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.045 0.955 33 H 0.046 0.954 34 H 0.048 0.952 35 H 0.057 0.943 36 H 0.365 0.635 37 H 0.032 0.968 38 H 0.077 0.923 39 H 0.024 0.976 40 H 0.083 0.917 41 H 0.067 0.933 42 H 0.051 0.949 43 H 0.271 0.729 44 H 0.018 0.982 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.503 -19.481 -0.194 24.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.157 4.157 4 C -0.017 4.017 5 O -0.296 6.296 6 C -0.044 4.044 7 C 0.058 3.942 8 H 0.131 0.869 9 O -0.348 6.348 10 C -0.111 4.111 11 N -0.233 5.233 12 C -0.089 4.089 13 C -0.151 4.151 14 C 0.005 3.995 15 H 0.037 0.963 16 C -0.624 4.624 17 H 0.069 0.931 18 C -0.187 4.187 19 N -0.551 5.551 20 Si 0.899 3.101 21 H -0.216 1.216 22 H -0.215 1.215 23 H -0.211 1.211 24 C -0.076 4.076 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.211 0.789 37 H 0.050 0.950 38 H 0.095 0.905 39 H 0.042 0.958 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.069 0.931 43 H 0.082 0.918 44 H 0.036 0.964 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.663 -17.205 0.803 22.620 hybrid contribution 0.517 -2.741 -1.126 3.008 sum -14.146 -19.946 -0.323 24.455 Atomic orbital electron populations 1.21757 0.95370 1.01678 1.02136 1.21448 0.96312 0.96106 1.02109 1.21545 0.93460 0.97113 1.03578 1.22526 0.95224 0.84108 0.99829 1.87966 1.20513 1.25765 1.95330 1.23259 0.81957 0.98664 1.00547 1.21918 0.93391 0.90003 0.88924 0.86911 1.86696 1.72222 1.60921 1.14984 1.22825 0.95068 0.92411 1.00774 1.64680 1.21229 1.08580 1.28781 1.23375 1.00939 0.95872 0.88723 1.22719 0.97081 0.95856 0.99451 1.19643 0.92792 0.92091 0.94932 0.96342 1.22009 1.45687 1.01674 0.93044 0.93148 1.25790 0.94721 0.98475 0.99733 1.70767 1.45223 1.38325 1.00826 0.83524 0.76157 0.75929 0.74489 1.21645 1.21482 1.21095 1.22987 0.85757 0.97668 1.01202 0.92550 0.92650 0.92549 0.91924 0.91898 0.91038 0.91027 0.93660 0.93587 0.93355 0.92513 0.78854 0.94970 0.90465 0.95815 0.89828 0.91399 0.93078 0.91794 0.96377 0.90879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.12 -0.78 5.93 -26.73 -0.16 -0.94 16 3 C -0.12 -0.98 5.58 -26.73 -0.15 -1.13 16 4 C 0.06 0.55 5.94 37.16 0.22 0.77 16 5 O -0.38 -4.68 10.31 -40.08 -0.41 -5.09 16 6 C 0.03 0.37 5.57 37.16 0.21 0.57 16 7 C 0.12 1.59 3.46 -26.73 -0.09 1.50 16 8 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 9 O -0.54 -7.88 10.67 -40.08 -0.43 -8.31 16 10 C 0.02 0.28 4.52 -3.83 -0.02 0.26 16 11 N -0.51 -9.82 5.24 -230.46 -1.21 -11.03 16 12 C 0.04 0.75 5.33 -1.90 -0.01 0.74 16 13 C -0.11 -2.67 5.57 -24.87 -0.14 -2.80 16 14 C 0.02 0.62 2.54 -90.42 -0.23 0.39 16 15 H 0.02 0.50 7.95 -51.93 -0.41 0.09 16 16 C -0.59 -16.59 8.38 -34.44 -0.29 -16.88 16 17 H 0.05 1.43 7.34 -52.49 -0.39 1.04 16 18 C 0.02 0.48 5.34 -17.82 -0.10 0.38 16 19 N -0.91 -27.66 13.45 55.43 0.75 -26.91 16 20 Si 1.07 25.59 29.90 -169.99 -5.08 20.51 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 C 0.05 1.10 6.31 -2.75 -0.02 1.08 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.37 4.08 9.05 45.56 0.41 4.49 16 37 H 0.03 0.45 7.83 -51.93 -0.41 0.04 16 38 H 0.08 1.05 8.08 -51.92 -0.42 0.63 16 39 H 0.02 0.43 7.81 -51.93 -0.41 0.02 16 40 H 0.08 1.62 6.79 -51.93 -0.35 1.26 16 41 H 0.07 1.77 7.86 -51.93 -0.41 1.36 16 42 H 0.05 1.22 7.10 -51.92 -0.37 0.85 16 43 H 0.27 8.08 5.65 -40.82 -0.23 7.85 16 44 H 0.02 0.36 7.77 -51.93 -0.40 -0.05 16 45 H 0.07 1.63 7.39 -51.92 -0.38 1.25 16 LS Contribution 353.61 15.07 5.33 5.33 Total: -1.00 -31.67 353.61 -9.09 -40.76 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -7.63 Total: 1.31 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -0.40 Total: -16.57 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: -0.46 Total: -37.94 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -0.84 Total: -13.40 kcal Atomic # 14 Polarization: 25.59 SS G_CDS: -5.08 Total: 20.51 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.67 -9.09 -40.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397692985.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.386 kcal (2) G-P(sol) polarization free energy of solvation -31.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds