Wall clock time and date at job start Mon Mar 30 2020 05:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47098 * 2 1 4 4 C 1.52998 * 109.46852 * 180.02562 * 3 2 1 5 5 O 1.42904 * 109.46967 * 179.97438 * 4 3 2 6 6 C 1.42905 * 113.99898 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47047 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.46759 * 55.00215 * 7 6 5 9 9 O 1.42900 * 109.47412 * 295.00895 * 7 6 5 10 10 C 1.52992 * 109.47304 * 175.00356 * 7 6 5 11 11 N 1.46902 * 109.47425 * 185.00326 * 10 7 6 12 12 C 1.48528 * 110.99801 * 287.39715 * 11 10 7 13 13 C 1.54937 * 103.22430 * 200.27877 * 12 11 10 14 14 C 1.54592 * 102.92511 * 37.41391 * 13 12 11 15 15 H 1.09002 * 110.39425 * 96.99901 * 14 13 12 16 16 C 1.50695 * 110.31227 * 219.12886 * 14 13 12 17 17 H 1.07999 * 120.00538 * 115.71069 * 16 14 13 18 18 C 1.37881 * 119.99661 * 295.71417 * 16 14 13 19 19 N 1.31520 * 120.00186 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 120.00030 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.47297 * 89.99863 * 20 18 16 22 22 H 1.48503 * 109.47261 * 330.00044 * 20 18 16 23 23 H 1.48500 * 109.47454 * 210.00037 * 20 18 16 24 24 C 1.47903 * 110.99941 * 170.00158 * 11 10 7 25 25 H 1.08999 * 109.47374 * 59.99632 * 1 2 3 26 26 H 1.09000 * 109.47100 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46165 * 299.99672 * 1 2 3 28 28 H 1.09003 * 109.46165 * 240.00328 * 2 1 3 29 29 H 1.08999 * 109.47374 * 120.00368 * 2 1 3 30 30 H 1.08998 * 109.47472 * 60.00334 * 3 2 1 31 31 H 1.08999 * 109.47309 * 300.00408 * 3 2 1 32 32 H 1.08999 * 109.47391 * 60.00426 * 4 3 2 33 33 H 1.08999 * 109.47058 * 300.00024 * 4 3 2 34 34 H 1.09003 * 109.46859 * 60.00924 * 6 5 4 35 35 H 1.08995 * 109.47393 * 300.00593 * 6 5 4 36 36 H 0.96706 * 113.99469 * 299.99609 * 9 7 6 37 37 H 1.09000 * 109.47343 * 64.99742 * 10 7 6 38 38 H 1.09010 * 109.47128 * 305.00517 * 10 7 6 39 39 H 1.08999 * 110.67200 * 318.71089 * 12 11 10 40 40 H 1.08997 * 110.67160 * 81.67607 * 12 11 10 41 41 H 1.09003 * 110.72666 * 279.05141 * 13 12 11 42 42 H 1.09009 * 110.72428 * 155.77540 * 13 12 11 43 43 H 0.97001 * 119.99697 * 359.97438 * 19 18 16 44 44 H 1.08996 * 109.91819 * 26.48841 * 24 11 10 45 45 H 1.09008 * 109.91522 * 265.19754 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 8 4.0464 2.7897 -0.0012 6 6 5.4710 2.9025 -0.0013 7 6 5.8655 4.3807 -0.0026 8 1 5.3897 4.8845 0.8388 9 8 5.4381 4.9868 -1.2241 10 6 7.3854 4.5031 0.1230 11 7 7.7545 5.9200 0.2422 12 6 7.5902 6.6238 -1.0554 13 6 8.4851 7.8782 -0.8940 14 6 9.6949 7.3396 -0.0963 15 1 10.5159 7.0953 -0.7704 16 6 10.1416 8.3538 0.9248 17 1 10.0716 8.1265 1.9782 18 6 10.6397 9.5721 0.5141 19 7 10.7254 9.8489 -0.7688 20 14 11.1928 10.8297 1.7798 21 1 12.6315 10.6246 2.0854 22 1 10.3948 10.6663 3.0215 23 1 10.9919 12.1980 1.2388 24 6 9.1812 6.0675 0.6031 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8901 28 1 1.8932 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.9330 0.9288 -0.8909 33 1 3.9337 0.9284 0.8891 34 1 5.8737 2.4187 -0.8912 35 1 5.8738 2.4193 0.8888 36 1 5.8229 4.5881 -2.0166 37 1 7.8585 4.0776 -0.7620 38 1 7.7213 3.9643 1.0091 39 1 7.9439 6.0021 -1.8778 40 1 6.5493 6.9080 -1.2099 41 1 7.9654 8.6530 -0.3303 42 1 8.8012 8.2543 -1.8671 43 1 10.4385 9.1957 -1.4261 44 1 9.7434 5.2004 0.2566 45 1 9.2821 6.1713 1.6835 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397692985.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:15 Heat of formation + Delta-G solvation = -140.488851 kcal Electronic energy + Delta-G solvation = -21008.639298 eV Core-core repulsion = 17831.220608 eV Total energy + Delta-G solvation = -3177.418690 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.38351 -39.22945 -37.70039 -35.75657 -35.29445 -32.80040 -30.89853 -30.00235 -29.48448 -26.48842 -25.44618 -24.12343 -22.83908 -21.95583 -21.85074 -21.52433 -18.97749 -18.04637 -17.67306 -17.08359 -16.78926 -16.57628 -16.15441 -15.68268 -15.48515 -15.27705 -14.76149 -14.42193 -14.33101 -14.05429 -13.94758 -13.55760 -13.22107 -12.96573 -12.92670 -12.66223 -12.56343 -12.36848 -12.12182 -11.98456 -11.96880 -11.92405 -11.73566 -11.69189 -11.53958 -11.50926 -10.81951 -10.58441 -10.53161 -10.45196 -9.31461 -8.57168 -6.28678 1.52924 1.62061 1.79565 2.44122 2.58759 3.15655 3.23279 3.48349 3.83586 3.96480 3.97080 4.01794 4.09314 4.17552 4.20603 4.26277 4.35763 4.38622 4.40557 4.43691 4.45076 4.49603 4.63410 4.69137 4.80699 4.88696 4.90005 4.93329 5.00147 5.03059 5.09478 5.23114 5.26245 5.33323 5.37456 5.43031 5.47558 6.01469 6.12435 6.17164 6.24204 6.29062 6.69043 6.82913 7.49902 8.81797 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.052956 B = 0.002624 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.611549 B =10668.443941 C =10749.570603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.118 4.118 4 C 0.056 3.944 5 O -0.405 6.405 6 C 0.040 3.960 7 C 0.123 3.877 8 H 0.090 0.910 9 O -0.564 6.564 10 C 0.021 3.979 11 N -0.523 5.523 12 C 0.057 3.943 13 C -0.107 4.107 14 C 0.013 3.987 15 H -0.004 1.004 16 C -0.599 4.599 17 H 0.044 0.956 18 C -0.034 4.034 19 N -0.939 5.939 20 Si 1.115 2.885 21 H -0.273 1.273 22 H -0.274 1.274 23 H -0.285 1.285 24 C 0.062 3.938 25 H 0.053 0.947 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.380 0.620 37 H 0.051 0.949 38 H 0.093 0.907 39 H 0.045 0.955 40 H 0.088 0.912 41 H 0.035 0.965 42 H 0.039 0.961 43 H 0.261 0.739 44 H 0.038 0.962 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.952 -21.475 0.197 26.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.156 4.156 4 C -0.020 4.020 5 O -0.325 6.325 6 C -0.038 4.038 7 C 0.064 3.936 8 H 0.108 0.892 9 O -0.370 6.370 10 C -0.108 4.108 11 N -0.247 5.247 12 C -0.071 4.071 13 C -0.146 4.146 14 C -0.006 4.006 15 H 0.015 0.985 16 C -0.637 4.637 17 H 0.063 0.937 18 C -0.232 4.232 19 N -0.577 5.577 20 Si 0.938 3.062 21 H -0.199 1.199 22 H -0.200 1.200 23 H -0.211 1.211 24 C -0.065 4.065 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.228 0.772 37 H 0.069 0.931 38 H 0.111 0.889 39 H 0.063 0.937 40 H 0.106 0.894 41 H 0.054 0.946 42 H 0.058 0.942 43 H 0.071 0.929 44 H 0.056 0.944 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.120 -19.239 1.186 24.499 hybrid contribution 0.620 -2.165 -1.269 2.585 sum -14.500 -21.405 -0.083 25.854 Atomic orbital electron populations 1.21772 0.95115 1.02265 1.01924 1.21429 0.96518 0.94832 1.02775 1.21550 0.93181 0.98216 1.02628 1.22695 0.95516 0.82900 1.00897 1.87925 1.21208 1.27751 1.95581 1.23158 0.81692 0.96674 1.02232 1.21756 0.92223 0.91630 0.88015 0.89244 1.86654 1.72671 1.61794 1.15908 1.22910 0.95984 0.89509 1.02393 1.64597 1.19525 1.11942 1.28685 1.23187 1.00084 0.94070 0.89731 1.22507 0.97117 0.96992 0.97982 1.19668 0.92764 0.93650 0.94548 0.98549 1.22372 1.45374 1.02566 0.93434 0.93748 1.27199 0.94560 1.00784 1.00680 1.70876 1.46895 1.38394 1.01513 0.82942 0.76867 0.73606 0.72794 1.19863 1.19953 1.21081 1.22722 0.87404 0.96355 1.00034 0.92790 0.91657 0.92798 0.91220 0.91217 0.91992 0.92005 0.92483 0.92479 0.91389 0.90988 0.77159 0.93118 0.88888 0.93696 0.89359 0.94587 0.94194 0.92856 0.94359 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.91 71.98 0.71 -0.87 16 2 C -0.12 -1.29 5.93 30.60 0.18 -1.11 16 3 C -0.12 -1.80 5.58 30.59 0.17 -1.63 16 4 C 0.06 0.91 5.94 71.98 0.43 1.34 16 5 O -0.40 -9.28 10.31 -144.34 -1.49 -10.77 16 6 C 0.04 0.76 5.57 71.98 0.40 1.16 16 7 C 0.12 3.09 3.46 30.59 0.11 3.20 16 8 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 9 O -0.56 -15.22 10.67 -144.34 -1.54 -16.76 16 10 C 0.02 0.55 4.52 86.30 0.39 0.94 16 11 N -0.52 -19.43 5.24 -883.03 -4.63 -24.06 16 12 C 0.06 2.16 5.33 86.65 0.46 2.62 16 13 C -0.11 -5.19 5.57 31.80 0.18 -5.01 16 14 C 0.01 0.65 2.54 -10.66 -0.03 0.63 16 15 H 0.00 -0.20 7.95 -2.39 -0.02 -0.22 16 16 C -0.60 -34.50 8.38 25.60 0.21 -34.29 16 17 H 0.04 2.55 7.34 -2.91 -0.02 2.52 16 18 C -0.03 -2.00 5.34 84.65 0.45 -1.55 16 19 N -0.94 -57.99 13.45 21.45 0.29 -57.71 16 20 Si 1.12 51.61 29.90 68.60 2.05 53.66 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 23 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 24 C 0.06 2.63 6.31 86.45 0.55 3.18 16 25 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.38 7.48 9.05 -74.05 -0.67 6.81 16 37 H 0.05 1.20 7.83 -2.39 -0.02 1.18 16 38 H 0.09 2.21 8.08 -2.38 -0.02 2.19 16 39 H 0.04 1.53 7.81 -2.39 -0.02 1.51 16 40 H 0.09 3.31 6.79 -2.39 -0.02 3.30 16 41 H 0.04 1.93 7.86 -2.39 -0.02 1.91 16 42 H 0.04 1.97 7.10 -2.38 -0.02 1.95 16 43 H 0.26 16.11 5.65 -92.71 -0.52 15.58 16 44 H 0.04 1.44 7.77 -2.39 -0.02 1.42 16 45 H 0.06 2.72 7.39 -2.38 -0.02 2.70 16 Total: -1.00 -68.98 353.61 -0.60 -69.57 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 0.51 Total: 17.45 kcal Atomic # 6 Polarization: -35.60 SS G_CDS: 4.21 Total: -31.39 kcal Atomic # 7 Polarization: -77.42 SS G_CDS: -4.34 Total: -81.76 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -3.03 Total: -27.53 kcal Atomic # 14 Polarization: 51.61 SS G_CDS: 2.05 Total: 53.66 kcal Total: -68.98 -0.60 -69.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397692985.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.915 kcal (2) G-P(sol) polarization free energy of solvation -68.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds