Wall clock time and date at job start Mon Mar 30 2020 04:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45198 * 109.47197 * 2 1 4 4 C 1.34224 * 116.99850 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00461 * 0.02562 * 4 3 2 6 6 C 1.50703 * 120.00038 * 179.72087 * 4 3 2 7 7 H 1.08993 * 109.47204 * 305.28144 * 6 4 3 8 8 O 1.42889 * 109.47501 * 185.27262 * 6 4 3 9 9 C 1.53005 * 109.46875 * 65.27561 * 6 4 3 10 10 N 1.46893 * 109.47276 * 180.47086 * 9 6 4 11 11 C 1.46853 * 111.00129 * 200.05709 * 10 9 6 12 12 C 1.53039 * 109.52373 * 174.15886 * 11 10 9 13 13 C 1.53118 * 109.27843 * 59.17727 * 12 11 10 14 14 C 1.53118 * 109.15935 * 302.34599 * 13 12 11 15 15 H 1.08999 * 109.50334 * 297.71273 * 14 13 12 16 16 C 1.50703 * 109.49920 * 177.59512 * 14 13 12 17 17 H 1.08000 * 120.00099 * 240.19733 * 16 14 13 18 18 C 1.37882 * 119.99967 * 60.19725 * 16 14 13 19 19 N 1.31514 * 119.99991 * 359.97438 * 18 16 14 20 20 Si 1.86803 * 119.99833 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47276 * 90.00133 * 20 18 16 22 22 H 1.48501 * 109.46993 * 210.00096 * 20 18 16 23 23 H 1.48502 * 109.47115 * 329.99656 * 20 18 16 24 24 C 1.46847 * 111.00439 * 75.84515 * 10 9 6 25 25 H 1.08993 * 109.47697 * 300.00334 * 1 2 3 26 26 H 1.09002 * 109.46682 * 60.00112 * 1 2 3 27 27 H 1.09001 * 109.47415 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47002 * 239.99579 * 2 1 3 29 29 H 1.09002 * 109.46682 * 119.99888 * 2 1 3 30 30 H 0.96700 * 114.00765 * 300.00661 * 8 6 4 31 31 H 1.09009 * 109.47136 * 300.47364 * 9 6 4 32 32 H 1.09001 * 109.46911 * 60.46889 * 9 6 4 33 33 H 1.09004 * 109.45985 * 294.17234 * 11 10 9 34 34 H 1.08996 * 109.46136 * 54.14163 * 11 10 9 35 35 H 1.08996 * 109.50343 * 299.23796 * 12 11 10 36 36 H 1.09003 * 109.50080 * 179.11695 * 12 11 10 37 37 H 1.09004 * 109.52128 * 182.43679 * 13 12 11 38 38 H 1.09006 * 109.57231 * 62.28018 * 13 12 11 39 39 H 0.96998 * 119.99776 * 179.97438 * 19 18 16 40 40 H 1.09002 * 109.45906 * 305.86090 * 24 10 9 41 41 H 1.09001 * 109.45804 * 65.83316 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9373 -0.0058 7 1 3.5121 3.4957 -0.8479 8 8 5.3426 2.8641 -0.1277 9 6 3.5568 3.6457 1.3006 10 7 4.1087 5.0069 1.2898 11 6 4.2067 5.5460 2.6523 12 6 4.9172 6.9010 2.6164 13 6 4.1282 7.8619 1.7227 14 6 3.9991 7.2549 0.3230 15 1 4.9903 7.1336 -0.1140 16 6 3.1732 8.1674 -0.5468 17 1 2.2523 7.8098 -0.9832 18 6 3.5932 9.4588 -0.7853 19 7 4.7143 9.8945 -0.2535 20 14 2.5698 10.5896 -1.8640 21 1 1.5937 11.3269 -1.0223 22 1 3.4612 11.5580 -2.5517 23 1 1.8412 9.7829 -2.8757 24 6 3.3152 5.8898 0.4253 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 5.7745 2.3799 0.5893 31 1 2.4721 3.6941 1.3977 32 1 3.9725 3.0917 2.1423 33 1 3.2061 5.6714 3.0660 34 1 4.7736 4.8551 3.2762 35 1 5.9228 6.7741 2.2155 36 1 4.9758 7.3080 3.6258 37 1 4.6536 8.8149 1.6596 38 1 3.1355 8.0205 2.1441 39 1 5.0100 10.8029 -0.4216 40 1 3.2345 5.4485 -0.5681 41 1 2.3188 6.0137 0.8497 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397726223.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:32 Heat of formation + Delta-G solvation = -144.833913 kcal Electronic energy + Delta-G solvation = -21643.781689 eV Core-core repulsion = 18330.341488 eV Total energy + Delta-G solvation = -3313.440201 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.74799 -38.50571 -37.21619 -36.03236 -33.66996 -32.20274 -31.72295 -29.88711 -28.97812 -25.02549 -24.79954 -23.25020 -21.81318 -21.35002 -20.92443 -18.63948 -18.21529 -17.31932 -16.78199 -16.28242 -15.56099 -15.32270 -14.94100 -14.51481 -14.18680 -13.95128 -13.58645 -13.11275 -13.07088 -12.87369 -12.53332 -12.29302 -12.20357 -11.95501 -11.82125 -11.65473 -11.44309 -10.94555 -10.91378 -10.75144 -10.67288 -10.64399 -10.11032 -9.99674 -9.81365 -9.45211 -9.04901 -8.69200 -8.28606 -7.72761 -5.95534 -4.01678 2.00424 2.45677 3.32234 3.39299 3.42106 4.04821 4.45115 4.52529 4.66337 4.71603 4.77536 4.87259 4.99696 5.04012 5.34677 5.38914 5.50954 5.60534 5.62194 5.71508 5.73400 5.82228 6.03430 6.21194 6.24037 6.37111 6.48088 6.69767 6.74454 6.94974 7.21552 7.36197 7.45024 7.58063 7.70425 7.74136 7.78702 8.10485 8.19025 8.49100 9.02329 9.62587 11.10543 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.020753 B = 0.004435 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.888101 B = 6312.187313 C = 6958.034605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.059 3.941 3 O -0.354 6.354 4 C 0.436 3.564 5 O -0.506 6.506 6 C 0.128 3.872 7 H 0.139 0.861 8 O -0.511 6.511 9 C 0.030 3.970 10 N -0.527 5.527 11 C 0.065 3.935 12 C -0.117 4.117 13 C -0.111 4.111 14 C 0.055 3.945 15 H 0.037 0.963 16 C -0.515 4.515 17 H 0.053 0.947 18 C 0.063 3.937 19 N -0.888 5.888 20 Si 0.890 3.110 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.065 3.935 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.378 0.622 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.024 0.976 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.047 0.953 37 H 0.091 0.909 38 H 0.029 0.971 39 H 0.259 0.741 40 H 0.060 0.940 41 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.283 -16.016 4.435 17.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 O -0.271 6.271 4 C 0.278 3.722 5 O -0.394 6.394 6 C 0.066 3.934 7 H 0.157 0.843 8 O -0.315 6.315 9 C -0.099 4.099 10 N -0.252 5.252 11 C -0.063 4.063 12 C -0.155 4.155 13 C -0.149 4.149 14 C 0.036 3.964 15 H 0.055 0.945 16 C -0.554 4.554 17 H 0.072 0.928 18 C -0.138 4.138 19 N -0.527 5.527 20 Si 0.718 3.282 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.062 4.062 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.226 0.774 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.042 0.958 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.109 0.891 38 H 0.048 0.952 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -4.612 -15.848 3.712 16.918 hybrid contribution -1.320 0.115 0.262 1.351 sum -5.933 -15.733 3.974 17.278 Atomic orbital electron populations 1.21810 0.92522 1.02888 1.03787 1.23037 0.95512 0.80390 1.02489 1.86566 1.24577 1.32310 1.83638 1.25186 0.80842 0.94136 0.72054 1.90655 1.60466 1.42990 1.45289 1.21592 0.83004 0.86852 1.01976 0.84328 1.86737 1.15168 1.77632 1.51993 1.22593 0.99005 0.92802 0.95513 1.61869 1.52308 1.00069 1.10920 1.22048 0.98447 0.97173 0.88595 1.21676 1.00317 0.94266 0.99231 1.21663 0.97611 1.00055 0.95599 1.18661 0.96603 0.88144 0.92973 0.94515 1.21141 1.07607 0.96903 1.29727 0.92844 1.24927 0.94983 0.98026 0.95854 1.69891 1.21376 1.17093 1.44291 0.86636 0.80115 0.80715 0.80756 1.20828 1.21261 1.19967 1.22409 0.93895 0.95239 0.94610 0.91367 0.91291 0.90312 0.91247 0.91324 0.77375 0.92887 0.90897 0.95784 0.92422 0.91897 0.93464 0.89076 0.95177 0.93067 0.92193 0.96041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.29 37.16 0.38 -0.71 16 2 C 0.06 0.57 6.19 37.16 0.23 0.80 16 3 O -0.35 -4.38 10.22 -39.24 -0.40 -4.78 16 4 C 0.44 5.95 7.27 36.01 0.26 6.21 16 5 O -0.51 -7.87 16.07 -25.46 -0.41 -8.28 16 6 C 0.13 1.80 3.55 -27.88 -0.10 1.70 16 7 H 0.14 2.02 6.83 -51.93 -0.35 1.66 16 8 O -0.51 -7.77 12.87 -55.14 -0.71 -8.48 16 9 C 0.03 0.42 4.64 -3.83 -0.02 0.41 16 10 N -0.53 -9.26 4.46 -234.67 -1.05 -10.31 16 11 C 0.07 1.09 5.43 -3.83 -0.02 1.07 16 12 C -0.12 -2.23 6.09 -26.65 -0.16 -2.39 16 13 C -0.11 -2.59 5.03 -26.61 -0.13 -2.72 16 14 C 0.05 1.36 2.26 -91.69 -0.21 1.15 16 15 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 16 C -0.52 -13.95 8.56 -34.44 -0.29 -14.25 16 17 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 18 C 0.06 1.74 5.31 -17.82 -0.09 1.65 16 19 N -0.89 -25.22 11.36 55.43 0.63 -24.59 16 20 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 24 C 0.07 1.34 4.51 -3.84 -0.02 1.32 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 29 H 0.07 0.63 8.13 -51.93 -0.42 0.20 16 30 H 0.38 4.58 8.79 45.56 0.40 4.98 16 31 H 0.05 0.72 8.00 -51.92 -0.42 0.31 16 32 H 0.07 0.90 7.79 -51.93 -0.40 0.49 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.83 7.93 -51.93 -0.41 0.42 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.09 2.38 6.16 -51.93 -0.32 2.06 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.06 1.21 6.72 -51.93 -0.35 0.86 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 332.78 15.07 5.01 5.01 Total: -1.00 -30.44 332.78 -8.16 -38.60 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -6.05 Total: 2.47 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -0.17 Total: -5.77 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: -0.42 Total: -34.90 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -1.52 Total: -21.54 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.44 -8.16 -38.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397726223.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.230 kcal (2) G-P(sol) polarization free energy of solvation -30.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds