Wall clock time and date at job start Mon Mar 30 2020 04:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45198 * 109.47197 * 2 1 4 4 C 1.34224 * 116.99850 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00461 * 0.02562 * 4 3 2 6 6 C 1.50703 * 120.00038 * 179.72087 * 4 3 2 7 7 H 1.08993 * 109.47204 * 305.28144 * 6 4 3 8 8 O 1.42889 * 109.47501 * 185.27262 * 6 4 3 9 9 C 1.53005 * 109.46875 * 65.27561 * 6 4 3 10 10 N 1.46893 * 109.47276 * 180.47086 * 9 6 4 11 11 C 1.46853 * 111.00129 * 200.05709 * 10 9 6 12 12 C 1.53039 * 109.52373 * 174.15886 * 11 10 9 13 13 C 1.53118 * 109.27843 * 59.17727 * 12 11 10 14 14 C 1.53118 * 109.15935 * 302.34599 * 13 12 11 15 15 H 1.08999 * 109.50334 * 297.71273 * 14 13 12 16 16 C 1.50703 * 109.49920 * 177.59512 * 14 13 12 17 17 H 1.08000 * 120.00099 * 240.19733 * 16 14 13 18 18 C 1.37882 * 119.99967 * 60.19725 * 16 14 13 19 19 N 1.31514 * 119.99991 * 359.97438 * 18 16 14 20 20 Si 1.86803 * 119.99833 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47276 * 90.00133 * 20 18 16 22 22 H 1.48501 * 109.46993 * 210.00096 * 20 18 16 23 23 H 1.48502 * 109.47115 * 329.99656 * 20 18 16 24 24 C 1.46847 * 111.00439 * 75.84515 * 10 9 6 25 25 H 1.08993 * 109.47697 * 300.00334 * 1 2 3 26 26 H 1.09002 * 109.46682 * 60.00112 * 1 2 3 27 27 H 1.09001 * 109.47415 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47002 * 239.99579 * 2 1 3 29 29 H 1.09002 * 109.46682 * 119.99888 * 2 1 3 30 30 H 0.96700 * 114.00765 * 300.00661 * 8 6 4 31 31 H 1.09009 * 109.47136 * 300.47364 * 9 6 4 32 32 H 1.09001 * 109.46911 * 60.46889 * 9 6 4 33 33 H 1.09004 * 109.45985 * 294.17234 * 11 10 9 34 34 H 1.08996 * 109.46136 * 54.14163 * 11 10 9 35 35 H 1.08996 * 109.50343 * 299.23796 * 12 11 10 36 36 H 1.09003 * 109.50080 * 179.11695 * 12 11 10 37 37 H 1.09004 * 109.52128 * 182.43679 * 13 12 11 38 38 H 1.09006 * 109.57231 * 62.28018 * 13 12 11 39 39 H 0.96998 * 119.99776 * 179.97438 * 19 18 16 40 40 H 1.09002 * 109.45906 * 305.86090 * 24 10 9 41 41 H 1.09001 * 109.45804 * 65.83316 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9373 -0.0058 7 1 3.5121 3.4957 -0.8479 8 8 5.3426 2.8641 -0.1277 9 6 3.5568 3.6457 1.3006 10 7 4.1087 5.0069 1.2898 11 6 4.2067 5.5460 2.6523 12 6 4.9172 6.9010 2.6164 13 6 4.1282 7.8619 1.7227 14 6 3.9991 7.2549 0.3230 15 1 4.9903 7.1336 -0.1140 16 6 3.1732 8.1674 -0.5468 17 1 2.2523 7.8098 -0.9832 18 6 3.5932 9.4588 -0.7853 19 7 4.7143 9.8945 -0.2535 20 14 2.5698 10.5896 -1.8640 21 1 1.5937 11.3269 -1.0223 22 1 3.4612 11.5580 -2.5517 23 1 1.8412 9.7829 -2.8757 24 6 3.3152 5.8898 0.4253 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 5.7745 2.3799 0.5893 31 1 2.4721 3.6941 1.3977 32 1 3.9725 3.0917 2.1423 33 1 3.2061 5.6714 3.0660 34 1 4.7736 4.8551 3.2762 35 1 5.9228 6.7741 2.2155 36 1 4.9758 7.3080 3.6258 37 1 4.6536 8.8149 1.6596 38 1 3.1355 8.0205 2.1441 39 1 5.0100 10.8029 -0.4216 40 1 3.2345 5.4485 -0.5681 41 1 2.3188 6.0137 0.8497 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397726223.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:31 Heat of formation + Delta-G solvation = -165.414032 kcal Electronic energy + Delta-G solvation = -21644.674110 eV Core-core repulsion = 18330.341488 eV Total energy + Delta-G solvation = -3314.332622 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.80294 -39.92007 -38.34740 -37.20968 -35.43453 -33.63007 -32.69441 -31.66500 -30.21528 -26.94303 -26.08503 -24.15253 -23.20155 -22.94590 -22.02919 -20.33418 -19.29336 -18.54770 -18.18924 -17.70117 -16.83734 -16.61391 -16.31460 -16.15098 -15.47783 -15.02371 -14.78924 -14.72815 -14.44096 -14.13196 -13.93405 -13.65485 -13.23127 -13.16725 -12.96245 -12.86461 -12.80955 -12.56563 -12.50702 -12.41124 -12.02998 -11.78473 -11.64097 -11.56604 -11.33936 -11.15181 -10.81145 -10.59948 -10.33911 -9.11495 -8.04817 -6.18628 0.93673 1.43063 1.44128 1.50016 1.54012 2.45155 2.88323 3.22564 3.48146 3.59602 3.77281 3.93144 3.99221 4.05416 4.21971 4.31862 4.32516 4.44229 4.56651 4.63758 4.67588 4.77607 4.80781 4.91252 4.93201 5.02907 5.10279 5.14085 5.22308 5.36739 5.44476 5.55551 5.67192 5.98566 6.15553 6.23799 6.29130 6.46632 6.48102 6.71206 6.94747 7.49247 8.99865 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.020753 B = 0.004435 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.888101 B = 6312.187313 C = 6958.034605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.051 3.949 3 O -0.358 6.358 4 C 0.446 3.554 5 O -0.527 6.527 6 C 0.130 3.870 7 H 0.130 0.870 8 O -0.531 6.531 9 C 0.036 3.964 10 N -0.539 5.539 11 C 0.068 3.932 12 C -0.111 4.111 13 C -0.105 4.105 14 C 0.052 3.948 15 H -0.005 1.005 16 C -0.535 4.535 17 H 0.053 0.947 18 C 0.014 3.986 19 N -0.916 5.916 20 Si 0.952 3.048 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.268 1.268 24 C 0.079 3.921 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.102 0.898 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.390 0.610 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.032 0.968 34 H 0.092 0.908 35 H 0.049 0.951 36 H 0.070 0.930 37 H 0.055 0.945 38 H 0.024 0.976 39 H 0.259 0.741 40 H 0.058 0.942 41 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.622 -17.457 5.258 19.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.022 4.022 3 O -0.274 6.274 4 C 0.289 3.711 5 O -0.416 6.416 6 C 0.068 3.932 7 H 0.147 0.853 8 O -0.337 6.337 9 C -0.092 4.092 10 N -0.263 5.263 11 C -0.060 4.060 12 C -0.149 4.149 13 C -0.143 4.143 14 C 0.033 3.967 15 H 0.013 0.987 16 C -0.573 4.573 17 H 0.071 0.929 18 C -0.185 4.185 19 N -0.556 5.556 20 Si 0.778 3.222 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.193 1.193 24 C -0.048 4.048 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.121 0.879 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.240 0.760 31 H 0.081 0.919 32 H 0.117 0.883 33 H 0.050 0.950 34 H 0.110 0.890 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.043 0.957 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -5.968 -17.308 4.547 18.864 hybrid contribution -0.900 0.520 0.001 1.039 sum -6.868 -16.788 4.548 18.700 Atomic orbital electron populations 1.21838 0.90496 1.04438 1.03697 1.23354 0.97096 0.79004 1.02790 1.86559 1.23622 1.34126 1.83141 1.24920 0.81184 0.93478 0.71496 1.90648 1.61051 1.43518 1.46431 1.21498 0.82621 0.87217 1.01819 0.85290 1.86704 1.15887 1.78083 1.53016 1.22609 0.99618 0.90650 0.96344 1.61742 1.52262 1.01167 1.11147 1.22067 0.99068 0.96300 0.88530 1.21582 0.99028 0.95002 0.99255 1.21468 0.97429 0.99535 0.95884 1.18582 0.94417 0.90561 0.93149 0.98711 1.21545 1.07871 0.97706 1.30220 0.92887 1.25710 0.96056 0.99575 0.97151 1.70043 1.22795 1.17333 1.45381 0.85644 0.78643 0.78728 0.79156 1.20110 1.21136 1.19258 1.22054 0.93597 0.93640 0.95530 0.91227 0.91565 0.87945 0.91318 0.90733 0.75956 0.91881 0.88297 0.94961 0.88962 0.93265 0.91122 0.92634 0.95695 0.93172 0.92396 0.95969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 10.29 71.98 0.74 -1.01 16 2 C 0.05 0.88 6.19 71.98 0.45 1.32 16 3 O -0.36 -8.20 10.22 -51.35 -0.52 -8.73 16 4 C 0.45 11.48 7.27 71.24 0.52 12.00 16 5 O -0.53 -15.65 16.07 28.39 0.46 -15.19 16 6 C 0.13 3.49 3.55 29.85 0.11 3.60 16 7 H 0.13 3.69 6.83 -2.39 -0.02 3.68 16 8 O -0.53 -15.60 12.87 -129.95 -1.67 -17.27 16 9 C 0.04 0.93 4.64 86.31 0.40 1.33 16 10 N -0.54 -18.04 4.46 -896.35 -4.00 -22.04 16 11 C 0.07 2.08 5.43 86.33 0.47 2.55 16 12 C -0.11 -4.12 6.09 30.65 0.19 -3.93 16 13 C -0.10 -4.97 5.03 30.67 0.15 -4.81 16 14 C 0.05 2.62 2.26 -11.49 -0.03 2.59 16 15 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 16 C -0.53 -29.58 8.56 25.60 0.22 -29.36 16 17 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 18 C 0.01 0.76 5.31 84.66 0.45 1.21 16 19 N -0.92 -53.58 11.36 21.45 0.24 -53.34 16 20 Si 0.95 43.79 29.54 68.60 2.03 45.82 16 21 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 22 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 24 C 0.08 3.23 4.51 86.32 0.39 3.62 16 25 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.07 1.20 8.13 -2.39 -0.02 1.18 16 29 H 0.07 1.21 8.13 -2.39 -0.02 1.19 16 30 H 0.39 8.90 8.79 -74.06 -0.65 8.24 16 31 H 0.06 1.53 8.00 -2.38 -0.02 1.51 16 32 H 0.10 2.05 7.79 -2.39 -0.02 2.03 16 33 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 34 H 0.09 2.27 7.93 -2.39 -0.02 2.25 16 35 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.06 3.01 6.16 -2.39 -0.01 3.00 16 38 H 0.02 1.16 8.14 -2.38 -0.02 1.14 16 39 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 40 H 0.06 2.34 6.72 -2.39 -0.02 2.33 16 41 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -66.62 332.78 0.94 -65.68 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.36 Total: 15.97 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: 4.05 Total: -10.89 kcal Atomic # 7 Polarization: -71.63 SS G_CDS: -3.75 Total: -75.38 kcal Atomic # 8 Polarization: -39.45 SS G_CDS: -1.74 Total: -41.19 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -66.62 0.94 -65.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397726223.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.736 kcal (2) G-P(sol) polarization free energy of solvation -66.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds